Acanthamoeba castellanii: ACA1_266080
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Entry
ACA1_266080 CDS
T02667
Name
(RefSeq) DEAD/DEAH box helicase/helicase conserved Cterminal domain containing protein
KO
K13025
ATP-dependent RNA helicase [EC:
5.6.2.7
]
Organism
acan
Acanthamoeba castellanii
Pathway
acan03013
Nucleocytoplasmic transport
acan03015
mRNA surveillance pathway
acan03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
acan00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
ACA1_266080
09122 Translation
03013 Nucleocytoplasmic transport
ACA1_266080
03015 mRNA surveillance pathway
ACA1_266080
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
acan03019
]
ACA1_266080
03041 Spliceosome [BR:
acan03041
]
ACA1_266080
03009 Ribosome biogenesis [BR:
acan03009
]
ACA1_266080
03012 Translation factors [BR:
acan03012
]
ACA1_266080
Enzymes [BR:
acan01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
ACA1_266080
Messenger RNA biogenesis [BR:
acan03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
ACA1_266080
mRNA cycle factors
Stress granule specific factors
ACA1_266080
Spliceosome [BR:
acan03041
]
Complex C
Other components
EJC/TREX
ACA1_266080
Ribosome biogenesis [BR:
acan03009
]
Eukaryotic type
90S particles
Helicases
ACA1_266080
Translation factors [BR:
acan03012
]
Eukaryotic type
Initiation factors
eIF-4
ACA1_266080
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_19
AAA_22
AAA_30
TniB
Motif
Other DBs
NCBI-GeneID:
14920161
NCBI-ProteinID:
XP_004341467
UniProt:
L8H2B8
LinkDB
All DBs
Position
Unknown
AA seq
369 aa
AA seq
DB search
MGLKEPLLRGIYGFGFEKPSAIQQRAIGQVIKGRDVIAQAQSGTGKTATFSISALQRIDT
TSKEPQALILSPTRELASQIQKVVYSLGSFMNVKCHVCIGGTNIGEDTRKLEAGAQIVSG
TPGRVFDMIRRRSLRTRSIKMLILDEADEMLSRGFKEQIYDVYRHLPPATQVVLVSATLP
HEVLEMTTKFMNDPIRILVKRDELTLEGIKQFFVAVEKEEWKFETLCDLYDTLTITQAVI
FCNTRRKVDWLTEKMRKVNFTVVAMHGAMEQSERDEIMTQFRAGDARVLITTDIWARGID
VSQVSLVINYDLPNDRELYLHRIGRSGRFGRKGVAINFVKNDDIRILRDIEQFYSTQIDE
MPMNVAELI
NT seq
1110 nt
NT seq
+upstream
nt +downstream
nt
atgggactcaaggagcctctccttcgcggcatctacggtttcggtttcgagaagccctcg
gccattcagcagcgtgcgatcggccaagtgatcaagggtcgcgatgtcatcgctcaggcc
cagtcgggcacgggtaagacggccacgttctcgatcagcgctctccagcgcatcgacacc
acctccaaggagccgcaggccctcatcctgtcgcccacccgcgagttggcctcccagatc
cagaaggtcgtctactcgctcggcagcttcatgaatgtcaagtgccacgtctgcatcggc
ggcactaacatcggcgaggacacccgcaagctcgaggctggcgcccagattgtgagcggc
acccccggtcgcgtcttcgacatgatccgcaggcgcagcttgcgcacgaggagcatcaag
atgctcatcctcgacgaagctgacgagatgctgagccgaggcttcaaggaacagatctac
gacgtctaccggcatctgcctcctgccactcaggtcgtgctggtttcggccactctgccg
cacgaggtgctggagatgacgaccaaattcatgaacgatccgatcagaattctggtcaag
cgcgatgaattgacgctcgagggcatcaagcagttcttcgtggccgtggagaaggaggaa
tggaagttcgagaccctgtgtgatctctacgacaccctcacgatcacgcaagccgtcatc
ttctgtaacacgaggaggaaggtcgattggctgacggagaagatgcgcaaggtgaacttc
accgtcgtcgccatgcacggcgcgatggaacagagcgagcgcgacgaaatcatgactcaa
ttccgagctggcgatgcgcgtgtgctcatcacgacggacatctgggcgcgaggtatcgac
gtgtcgcaggtctcgctcgtcatcaactacgatctccccaacgatcgtgagctgtacctc
cacaggatcggccgcagcggtcgtttcggacgcaagggcgtggccatcaactttgtaaag
aacgacgacatccgtatcctccgcgacatcgagcagttctactcgacgcagatcgacgag
atgcccatgaacgtggccgagctcatctaa
DBGET
integrated database retrieval system
