Acanthamoeba castellanii: ACA1_295350
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Entry
ACA1_295350 CDS
T02667
Name
(RefSeq) RNA binding domain containing protein
KO
K01148
poly(A)-specific ribonuclease [EC:
3.1.13.4
]
Organism
acan
Acanthamoeba castellanii
Pathway
acan03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
acan00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
ACA1_295350
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
acan03019
]
ACA1_295350
Enzymes [BR:
acan01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.4 poly(A)-specific ribonuclease
ACA1_295350
Messenger RNA biogenesis [BR:
acan03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
ACA1_295350
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
CAF1
RNA_bind
R3H
Motif
Other DBs
NCBI-GeneID:
14926507
NCBI-ProteinID:
XP_004368205
UniProt:
L8HJR1
LinkDB
All DBs
Position
Unknown
AA seq
631 aa
AA seq
DB search
MDVVKETFSAQFETIKQAILSCDFVAIDTELTGLSASKKARINSLDSVEERYGKLRESAS
KFMTIQWGLCTFTKTSEGEYVAQPFNFYVFPKPFHPNLDYTFVSSLIYHGIPWLRRDEEE
RIRSSRPAEAAGGAPKDDVALGDKDKAFIDAIWSAPLFPRFRRISVGPPSRIDEWLKTGE
KELRLAPCNSFQRRITYQEVAKRYNNAIDASAQSDEGSHLRYIVLSRLSDEERSAKRQEK
AQQGDAELEAAVGFRRVIDVLTEAKKPVVGHNLLLDLVHTLSFLQLPPPTSDQFKSQLHS
LFPTIVDTKFVVSSSPELVSQCASTALGDTHAAFDGPRFQDRPAISFPAGFGAYAEDKSR
FHEAGFDALITGVAYLRMAYHLAEARTGSADDLLPTGPLMEEYRNKLFLLRSDIPYYNLA
GPDPTPDRAGVFYVHNFSPSLRTGDIVRHFGSFGRVFVNWVDDTSLFITLSDKAQAPHVM
AHFDGVETRPPFDVLDSAGYQAWRHSLDGAPSSVGLRSPTSPLHPYAPGSLSSPYSPRPP
AASSSSDARSATTGKRKRDAPEELEEGEIREEGLPTATATTEEEEEEEQRQAKRGRHEKE
GDNNGHHHHEEEEDEEARQNDDQPASSCLLQ
NT seq
1896 nt
NT seq
+upstream
nt +downstream
nt
atggacgtcgtaaaggagaccttctccgcgcagtttgagaccatcaaacaggccattctg
tcatgcgacttcgttgccatcgacacagaactcacgggtctctcggcctccaaaaaggcg
aggattaactctttggactccgtggaagagcgctatggcaagcttcgggagagcgcttcc
aagttcatgacaatacaatgggggttgtgcacgttcacgaagacctctgagggagaatat
gtggcccagcccttcaacttctacgtctttcccaagcctttccaccccaacctggactac
acctttgtgtcgtcgctcatctaccacggcatcccgtggctgcgcagagatgaagaggag
cggatcagaagttcccgacccgcagaggccgcgggtggcgcaccaaaagatgacgtggct
ctgggcgacaaggacaaggccttcatcgacgccatctggtccgcgcctctctttccccgc
ttccggcgcatctctgtgggtccaccgagcaggatcgacgagtggctgaagacgggagaa
aaggagctcaggctggctccttgcaacagcttccagcggcgcatcacctatcaggaagtc
gccaagaggtacaacaacgccatcgatgcgtctgcgcagagcgacgaagggtcgcacctg
cgctatatcgtcctcagtcgcttgagcgatgaggagaggagtgccaagcgccaggaaaag
gcccagcagggcgatgcggaactggaggcggcggtcggattcaggcgggtcatcgatgtg
ctgactgaagccaagaagcctgtcgtgggccacaacttgctgctcgacctggtccacacg
ctctcgttcctccagttgccaccgcccacgagcgaccagttcaagagccaactgcactcc
ctgttccccacgattgtggacaccaagttcgtggtcagcagctcgcccgagctggtgagc
cagtgcgcgtccacggcgttgggcgatacccacgcggccttcgatggtccccgctttcag
gaccgccccgccatttcctttcccgctgggttcggggcctacgctgaagataagtcgcgc
ttccacgaggcgggctttgatgccctgatcaccggtgtggcttatctgcgcatggcctac
catctggccgaggcgaggaccgggagtgcggatgatttgctgcccacgggtccgctgatg
gaggagtaccgcaacaagctgttcctcctacgctcggacattccctactacaacctggcc
ggccctgaccctacgccggaccgagccggggtgttctacgtccacaacttcagcccctcg
ctgcgcacgggcgacattgtgcgccactttggctcctttgggcgggtgttcgtcaactgg
gtcgacgacacctccctctttatcaccctctccgacaaggcccaggcgcctcacgtcatg
gctcacttcgacggcgtcgagaccaggccgccgtttgacgtgctcgacagtgcgggctat
caggcgtggcggcattccctcgatggcgccccctcgagcgtaggtctacgctcaccaacg
tccccgctccacccctacgcgccgggatccctctcgtcgccctactccccgcgccctccg
gctgcgtcgtcgtcgtcggacgctcgttccgccacgaccggcaaacgcaagcgggacgcc
cctgaggagctggaggagggcgagatacgcgaggagggcctgcccaccgccaccgccacc
accgaggaggaggaggaggaggagcaacgccaggccaagcgcggccgccacgaaaaggaa
ggcgacaacaacggccaccaccaccacgaggaggaggaggacgaggaggcccggcagaat
gacgaccagccggcgtcgtcgtgtctcctccagtag
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