Acanthamoeba castellanii: ACA1_298790
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Entry
ACA1_298790 CDS
T02667
Name
(RefSeq) 3'5' exonuclease domain containing protein
KO
K12591
exosome complex exonuclease RRP6 [EC:3.1.13.-]
Organism
acan
Acanthamoeba castellanii
Pathway
acan03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
acan00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
ACA1_298790
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
acan03019
]
ACA1_298790
Messenger RNA biogenesis [BR:
acan03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Exosome cofactors
ACA1_298790
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DNA_pol_A_exo1
PMC2NT
HRDC
Motif
Other DBs
NCBI-GeneID:
14919428
NCBI-ProteinID:
XP_004340678
UniProt:
L8H2P3
LinkDB
All DBs
Position
Unknown
AA seq
929 aa
AA seq
DB search
MAAPVQEGEVVAGFLEHGSVEAFGRGLVGRLASAAAVANELPEGDDFNFLSTASFAGPDS
FRPTMRKMQNRLLRLAQELINHELPRNPPRVDDPTDPEDVTDRFEAVVDSTDLLLEKVDN
FADEARGQSNRPKVVVSTTTTQEKGRDFHLFHGSNVLRPQLQFKDPVDNTHTPWMPVPYR
NGQRPTPAPPSALPKDLETHMSTQLGITLPEESFSMYPHPFYEQLANLEYLPSQLGSCIE
QPFQPLENIPFTFTPDIINQVATVKDLKDVAQKLDAQTEFAVDLEHHSYRTFQGFTCLMQ
ISTRTEDFIVDTLALREHMHLLSSSFHDANIVKVFHGSDSDIMWLQRDFGLYVINMFDTG
QACRVLEYPSFSLAYLLRHHCGVLADKKYQLADWRIRPLPEEMLKYAREDTHYLLFIYDK
LRNELIGRANMSNNLILAVLNRSRELCLLQYEKPLWTPTSHLSLYNRFNYVFNEQQMRVF
AAVYKWRDTVAREEDESYRYVLPNHMLFHIAELVPTSVPALLACCNPVPPLVRINAEILV
DVITAARAEPSLSEGGVTPRWETSYRPLMAPTHQRMGPSAHQTAADQQQPPIAQAQPAAV
SAQSAAVAATPDRRDTTSPTLSKDELYSTAGWTSPRSSRAAVCSPVNKNYRTMIPRAGSS
LYSTLADASDSDDSDEDKKTAMLIASSISTQGLLPWHEVMAPEAESAAAAGGAKAAATTA
ADPAMADVPRSMQEIYEISNKNRKRNKEKRKLKETSKETAAEPFSPVKFSTSDESFDGAE
NDTMQGGRKKQKPNDLNDEEFMKSIGWASEEDARQAREAASAPAPFDYAAAPAPFSQAQP
QPPSQEASDHTFAPRGSRNAASSSSGGRNQQQRPAQASQQAPFDPHANLNSISGPRGGGR
GRFQRKDRSKTQTFGAARGGENRGQWPRR
NT seq
2790 nt
NT seq
+upstream
nt +downstream
nt
atggcggcgccggttcaagagggcgaagtggtagcgggattcctcgagcacggctcggtg
gaggcgttcgggcgcggtcttgtcggccgtctggccagcgccgcggctgtcgccaatgag
ctgcccgagggggatgatttcaacttcctatcgaccgcgtcatttgcaggacccgattcg
ttccgccccacgatgcgcaagatgcagaatcggcttctcaggctggcccaggaattaatc
aaccacgagctgccccgcaatcccccgcgcgtggacgatcccaccgatcccgaagatgtc
acggatcgattcgaggccgttgtcgattctacagatcttctcctcgagaaagtggacaac
ttcgccgacgaggcccgcggccagagcaatcgccccaaggtcgtcgtcagcaccaccacc
acacaagagaagggaagggactttcatctgtttcacggcagcaacgtgctgcggccgcag
cttcagttcaaggaccccgtggacaacacccacacgccgtggatgcccgtcccctatcgc
aacggccagcggcccacccccgcccctccttcggcgctgccaaaggacctcgagactcac
atgtcgacgcagctcggcatcactctccccgaggagtcgttctcaatgtacccgcacccg
ttctacgagcagctggccaacctcgagtacctgccctcgcagctgggctcctgcatcgag
cagcccttccagcccctcgaaaacatccccttcacctttacgccggacatcatcaatcag
gtggcgacggtgaaggacctgaaggacgtggcccagaagctcgacgcccagaccgagttc
gcggtggacttggagcaccactcctatcgcaccttccagggcttcacgtgcctcatgcag
atctccacccgcacagaggacttcattgtggacacgttggcgctgcgggagcacatgcac
ctcctgagcagctccttccacgacgccaacatcgtcaaggtgttccacggcagcgacagc
gatatcatgtggctccagcgcgactttggcctctacgtcatcaacatgttcgacaccggc
caggcttgccgcgtgctcgagtacccgtcgttctcgctggcctacctgctgcgccaccac
tgcggggtgctggccgacaagaagtaccagctcgccgactggcgcatccgcccgctgccc
gaggagatgctcaagtacgcgcgcgaggacacccactacctcctcttcatctacgacaag
ctgcggaacgagctgatcgggcgtgcgaacatgtcgaacaatctgatcctggcggtgctc
aaccgcagcagggagctgtgcctgctgcagtacgagaagcccctgtggacgcccaccagc
cacctctccctctacaaccgattcaactacgtcttcaacgaacagcagatgcgcgtcttc
gccgccgtctacaaatggcgcgacaccgtcgctcgtgaagaggacgagtcgtatcggtat
gtgctgcccaatcacatgctgttccacatcgccgagctggtgccgacgtcggtcccggcc
ctgctggcgtgctgcaacccggtgcccccgctcgtccgcatcaacgccgagatcctggtc
gacgtcatcaccgccgcccgcgccgagccctccctcagcgaaggaggtgtgacgccgcga
tgggagacgtcgtaccggccgctcatggcgcccacgcaccagcggatgggtccctcggcg
caccagacggccgccgaccagcagcagcccccgattgcgcaggcccagcctgcggccgtg
tcagcgcagtcggcggccgtcgccgccacgcccgaccggcgcgacactacgagccccacg
ctctccaaagacgagctctactccaccgccggctggacgtcgccccggagctcccgtgcg
gccgtgtgctcgcccgtcaacaagaactatcgcacgatgatcccgcgggcggggagcagc
ctctacagcacgctcgccgacgcgtcggactcggacgactcggacgaggacaagaagacc
gccatgctcatcgcctcctccatctccacccagggcctcctcccctggcatgaggtgatg
gcgccggaggcggagagcgcggcggcggccggcggggcaaaggctgcggcgacgacggcg
gcggatccggcgatggcggacgtgccgcggtcgatgcaggagatctacgagatttcgaac
aaaaaccgaaagcgcaacaaggagaagcggaagctcaaggagacctccaaggagaccgcc
gccgagcccttctcgcccgtcaagttctccacctccgacgaatccttcgacggcgccgaa
aacgacaccatgcaaggtggtcggaagaagcagaagccgaacgatctgaacgacgaggag
ttcatgaagtcgatcgggtgggcctcggaggaggacgcccggcaggcgcgggaggcggcc
agcgcgccggccccattcgactacgcggccgccccggccccgttcagccaggcccagccg
cagccgccgtcgcaggaggcctccgaccacacctttgccccgcgcggctcccgcaacgcc
gcatcgtcgtcgtcgggcggacgcaaccagcagcagcgcccggcgcaggcctcgcagcag
gcgcccttcgatccccacgccaacctcaacagcatcagcggaccacgaggcggggggcgc
ggacggttccagcgcaaggaccgaagcaagacgcagacctttggcgctgcccgaggcggc
gagaaccgaggccagtggccccgaagatag
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