KEGG   Acanthamoeba castellanii: ACA1_331480
Entry
ACA1_331480       CDS       T02667                                 
Name
(RefSeq) membraneassociated ring finger (C3HC4) 2, putative
  KO
K13175  THO complex subunit 6
Organism
acan  Acanthamoeba castellanii
Pathway
acan03013  Nucleocytoplasmic transport
Brite
KEGG Orthology (KO) [BR:acan00001]
 09120 Genetic Information Processing
  09122 Translation
   03013 Nucleocytoplasmic transport
    ACA1_331480
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:acan03019]
    ACA1_331480
   03041 Spliceosome [BR:acan03041]
    ACA1_331480
Messenger RNA biogenesis [BR:acan03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   Transport factors
    TREX complex
     ACA1_331480
Spliceosome [BR:acan03041]
 Other splicing related proteins
  Spliceosome associated proteins (SAPs)
   TREX complex
    ACA1_331480
SSDB
Motif
Pfam: WD40 WD40_Prp19 WD40_WDHD1_1st Beta-prop_TEP1_2nd WD40_CDC20-Fz EIF3I WDR55 Beta-prop_TEP1_C Beta-prop_WDR75_1st Beta-prop_WDR90_POC16_2nd Beta-prop_EML_2 Beta-prop_IFT122_1st NBCH_WD40 Beta-prop_EML WD40_MABP1-WDR62_2nd PQQ_3 Beta-prop_WDR19_1st Beta-prop_CAF1B_HIR1 WD40_MABP1-WDR62_1st Beta-prop_EIPR1 ANAPC4_WD40 WDR54 Beta-prop_IFT140_1st Beta-prop_IP5PC_F Beta-prop_RIG_2nd WD40_RFWD3 Beta-prop_DCAF12 Beta-prop_SCAP Beta-prop_Vps41 Ribosomal_L7Ae Beta-prop_DCAF4 Beta-prop_NUP159_NUP214 DUF7099 Beta-prop_NWD2_C
Other DBs
NCBI-GeneID: 14916772
NCBI-ProteinID: XP_004338118
UniProt: L8GT05
LinkDB
Position
Unknown
AA seq 210 aa
DIEGEEDNVDEALLYTFRNQEYPTETNGVAVTKEGLIYAACGDNKVHIWDTETEQEVGSL
QGHADYVHCVAVTNDGNQVISGGEDGTVRLWDSRTREPRAVLDAAARKSVSVTDFKPKLG
GNNWVSCVALDEYDTWMVCGCTHPSALPPCLALCSRHNTTRSHKQHSKVCGGGTHFLSLW
HLPSLTSSTVMPTGGTRKLLFSTTTRWVIP
NT seq 630 nt   +upstreamnt  +downstreamnt
gacatcgagggtgaggaggacaacgttgacgaggccctcctctacacattcagaaaccag
gagtatccgacagagaccaacggagtggcggtcaccaaggaggggttgatctacgctgcc
tgcggtgacaacaaagtccacatctgggacaccgagacggagcaggaagtaggaagcctg
cagggacatgccgactacgtccactgtgtcgcggtcacaaacgacgggaaccaggtgatc
tccggcggggaggacgggaccgtgaggctctgggattcccgaacacgcgagccgcgagcc
gtgctcgacgctgcggcgcgtaagagcgtgtcggtgaccgacttcaagccaaaactgggc
ggcaataactgggtgtcttgcgtcgccctcgatgagtacgacacgtggatggtatgtggc
tgcacccacccctctgctttgcctccttgcttggctctttgctcacgacacaacacgacg
cgatcacacaaacaacactcgaaggtgtgcggaggaggcacccattttctgagcctgtgg
catctgccttcgctgacctccagcacggtgatgcccaccggtggcacccgcaagctgctc
ttttcaacgacaacgaggtgggtcatccca

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