Acanthamoeba castellanii: ACA1_349660
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Entry
ACA1_349660 CDS
T02667
Name
(RefSeq) BAT1 protein
KO
K12812
ATP-dependent RNA helicase UAP56/SUB2 [EC:
5.6.2.7
]
Organism
acan
Acanthamoeba castellanii
Pathway
acan03013
Nucleocytoplasmic transport
acan03015
mRNA surveillance pathway
acan03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
acan00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
ACA1_349660
09122 Translation
03013 Nucleocytoplasmic transport
ACA1_349660
03015 mRNA surveillance pathway
ACA1_349660
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
acan03019
]
ACA1_349660
03041 Spliceosome [BR:
acan03041
]
ACA1_349660
Enzymes [BR:
acan01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
ACA1_349660
Messenger RNA biogenesis [BR:
acan03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
ACA1_349660
Spliceosome [BR:
acan03041
]
Complex C
Other components
EJC/TREX
ACA1_349660
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
ACA1_349660
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
P-loop_SecA
CMS1
AAA_30
DAAF9_N
Cas3-like_C_2
Motif
Other DBs
NCBI-GeneID:
14913680
NCBI-ProteinID:
XP_004335168
UniProt:
L8GJC9
LinkDB
All DBs
Position
Unknown
AA seq
464 aa
AA seq
DB search
MAEPFDVNELADYSDGELEQEEQETLEAGAKSDEAKTSADTHSTVHTASFKDFLLKPELL
RAITDCGFEHPSQVQFEVIPQAILGTDVICQANSGMGKTAVFVLSVLQQISAEDGTSCLI
LAHTRELAYQISHEFGRFTKYMPNIKASVFFGGLPIVQDRATLKKDPPHIVIGTPGRILA
LANEKALDLKKIKFFVLDECDSLLEPIDMRADVQKIFRLTPHNKQVMMFSATLNDEIRAV
CKKFMHNPLEIYISAGSKLTLHGLNQYYVQLEEREKTRKLVDLLDTLEFNQCVVFVSSVK
RAAELNKILVEQNFPSIAIYRGMQQKERIEKFAQFKSLRARIVVATNLLGRGIDVERINV
VINYDMPGEADTYLHRVGRAGRFGTKGLAISFVSTKEDGEVLNKVQSLFVVNIPDLKPGV
EIPKSSYSMALPHPAIITSPLDVRALSRMNSLFTLLVSSCAVQA
NT seq
1395 nt
NT seq
+upstream
nt +downstream
nt
atggccgagccttttgacgtcaacgagcttgctgattactctgatggagagctggagcaa
gaggaacaggagacgttggaggcgggagccaagtcggacgaggccaagacgtcggcggat
acccacagcacggttcacactgcttcgttcaaggatttcctcctgaagcccgaactcttg
cgcgccatcaccgactgcggtttcgagcacccctcgcaggtgcagttcgaggtcatcccg
caggcgatcctcggcacggacgtcatctgccaggccaactcgggcatgggtaagaccgcc
gtgttcgtgctctcggtcctgcagcagatctcggccgaagacggcaccagctgcctcatt
ctggcgcatacgcgcgagctggcgtaccagatctcgcacgagttcggccgtttcaccaag
tacatgccgaacatcaaggcgtccgtgttcttcggtggtctgcccatcgttcaggacagg
gctacgctcaagaaggatcccccgcacattgtgatcggtactcctggtcgtatcctcgct
ctggccaacgagaaggctctcgatctcaagaagatcaagttcttcgtcctcgatgagtgc
gactcgctcctcgagcccatcgacatgcgcgctgatgttcagaagatcttccgtctgact
ccccacaacaagcaagtcatgatgttctcggccacgctcaacgacgagatccgcgccgtc
tgcaagaagttcatgcacaacccgctcgaaatctacatcagcgccggcagcaagttgacc
ctccacggcctcaaccagtactacgtccagctcgaggagcgagagaagacccgcaagctc
gtcgaccttctggacactctcgagttcaaccagtgcgtcgtcttcgtgagctctgtcaag
cgggccgccgagctgaacaagatcctcgtcgagcagaacttcccctcgatcgccatctac
cgtggcatgcagcagaaggagagaattgagaagttcgcccagttcaagagtctgcgtgcc
cgtatcgtggtcgccaccaaccttctgggtcgcggtatcgacgtggagcgcatcaacgtc
gtgatcaactacgacatgcccggtgaggccgacacctacctccacagggtgggccgtgct
ggtcgtttcggtaccaagggtctggcgatctcgttcgtgtccaccaaggaggacggcgag
gtgctcaacaaggtgcagagcctcttcgttgtgaacatccccgacctcaagcccggcgtg
gagatccccaagtcctcctacagtatggcccttccccatcccgccatcatcacttcacca
ctcgacgtgcgagctctcagccgtatgaacagtttgtttactctgcttgtttcttcttgc
gcagtgcaagcctaa
DBGET
integrated database retrieval system
