Acanthamoeba castellanii: ACA1_379230
Help
Entry
ACA1_379230 CDS
T02667
Name
(RefSeq) RNA recognition motif domain containing protein
KO
K12881
THO complex subunit 4
Organism
acan
Acanthamoeba castellanii
Pathway
acan03013
Nucleocytoplasmic transport
acan03015
mRNA surveillance pathway
acan03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
acan00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
ACA1_379230
09122 Translation
03013 Nucleocytoplasmic transport
ACA1_379230
03015 mRNA surveillance pathway
ACA1_379230
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
acan03019
]
ACA1_379230
03041 Spliceosome [BR:
acan03041
]
ACA1_379230
Messenger RNA biogenesis [BR:
acan03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
ACA1_379230
TREX complex
ACA1_379230
Spliceosome [BR:
acan03041
]
Complex C
Other components
EJC/TREX
ACA1_379230
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
ACA1_379230
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RRM_1
RRM_occluded
Motif
Other DBs
NCBI-GeneID:
14916415
NCBI-ProteinID:
XP_004337755
UniProt:
L8GS43
LinkDB
All DBs
Position
Unknown
AA seq
257 aa
AA seq
DB search
MSKLELSLDEVIMSDKKKKQFREKAKQTVRGGSGKGGRATGGGRTGGGGGGGGRQQGGGQ
QQQERRQGGGVQRGQRRTRGQRATPYDKGNPENMWSHDLYNEDEERRRGGGVDRDLGNTG
FLKRSLGGGGGGGDKTTVEITNLSYDVSSDDLKRLLGGDGDLLKVHIAFDRSGRSEGTAK
AVFESREAANRAIRDFDGAELEGQVLSLAIVANEASRGRRGGGGGAKKVGDGNFQLSTAG
GRKVITRVRASDDRAFL
NT seq
774 nt
NT seq
+upstream
nt +downstream
nt
atgtcgaaacttgagctgagtctggacgaggtcatcatgtcggataagaagaagaagcaa
ttcagggaaaaggcgaagcagaccgtccgtggcggctcgggcaagggtggtcgggcaact
ggtggaggccgaactggtggtggtgggggcggtggtggtcggcagcaaggtggaggccag
cagcagcaggagagacgccagggcggtggcgtccagcgcggccagcgccgaactcgagga
cagagggccaccccttacgacaagggtaacccagagaacatgtggtcgcacgatctctac
aacgaggacgaggagcgcagacgcggcggcggcgtggacagggacctcggcaacaccggc
ttcctgaagcgctcgctgggcggcggcggcggcggcggcgacaagaccactgtcgagatc
accaacctcagttacgacgtgtccagcgacgacctcaagcgtctgctgggcggcgatggc
gacctgctcaaggtccacatcgcgttcgacaggtctggcaggtcggagggtaccgcgaag
gccgtgttcgagtcgcgcgaggccgccaacagggccatcagggactttgacggcgccgag
ctcgaggggcaggtcctgtcgctcgccatcgtcgccaacgaggcctcgcgcggcaggcga
ggcggcggcggcggtgccaagaaggtgggcgacggcaacttccagctctcgacggccggt
ggccgcaaggtcatcaccagggtacgcgcatctgatgacagggccttcttgtaa
DBGET
integrated database retrieval system
