KEGG   Acanthamoeba castellanii: ACA1_396210
Entry
ACA1_396210       CDS       T02667                                 
Name
(RefSeq) U4/U6 small nuclear ribonucleoprotein Prp4, putative
  KO
K12662  U4/U6 small nuclear ribonucleoprotein PRP4
Organism
acan  Acanthamoeba castellanii
Pathway
acan03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:acan00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    ACA1_396210
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03041 Spliceosome [BR:acan03041]
    ACA1_396210
Spliceosome [BR:acan03041]
 Complex B
  U4/U6.U5 tri-snRNP components
   U4/U6 snRNP specific factors
    ACA1_396210
SSDB
Motif
Pfam: WD40_Prp19 WD40 WD40_WDHD1_1st WD40_CDC20-Fz Beta-prop_EML_2 EIF3I WDR55 Beta-prop_TEP1_2nd Beta-prop_CAF1B_HIR1 Beta-prop_WDR90_POC16_2nd WD40_MABP1-WDR62_2nd Beta-prop_WDR75_1st PRP4 WD40_MABP1-WDR62_1st Beta-prop_EML ANAPC4_WD40 Beta-prop_EIPR1 NBCH_WD40 Beta-prop_TEP1_C WDR90_beta-prop_4th Beta-prop_DCAF4 Beta-prop_SPT8 Beta-prop_IFT122_1st Beta-prop_SCAP Beta-prop_RIG_2nd Beta-prop_WDR75_2nd WD40_RFWD3 Ge1_WD40 Beta-prop_WDR19_1st WD_LRWD1 Nbas_N WDR54
Other DBs
NCBI-GeneID: 14923798
NCBI-ProteinID: XP_004351612
UniProt: L8HCB3
LinkDB
Position
Unknown
AA seq 511 aa
MELPSGDGEKGRIYFGTLEKQGQQLVQQQAKEPEGQMELETLPFSHGIAESQERHSALLE
QLELSKRARQIAVPTSDPMVRARLRELGEPITLFGEQPPERRERLREVLSRMDVTQAVPA
TAAPAPLAAPATGAAGAKKRNDKMQEQPYFTEGSADLKASRRLIADYSLRKAQQRVGRAK
RKREEGNFEEELRKAAASRECLRRFSNAASQIGDDRPLSYCAFSPDSSILATASWSGQSK
LWSVPSCDLKTTLKGHGDRVGAIVFHPRSCLGQESGALNLASCSSDRTVKLWSLDSPSPI
GSLEGHTDRVSRLAFHPSGRFIGTTGFDKTWRLWDVEKGRELMVQEGHSREVYGIAFQCD
GSLAATSGMDGYGRVWDLRTGRSVMLLKGHAKSVLGIDFALNGYQLATGSDDHTVKIWDL
RKKRCSYTIPAHSSLISHVKFQPSEEGQFLLTASFDATCRLWSTRDYAPITTLAGHEGKV
LCADISPDGRYIASSSFDRTWKLFAEDLAYF
NT seq 1536 nt   +upstreamnt  +downstreamnt
atggagctgccctctggcgatggcgagaagggcaggatttacttcggcactctcgagaag
caaggccagcagctggtgcagcagcaggccaaggagccggaggggcagatggagctcgag
acgctgcccttttcgcacggtatcgccgagtcacaagagcgccactcggccctcctcgag
cagctcgagctcagcaagcgagcgcgccagattgcagtgcccaccagcgaccccatggtc
cgtgcacgcctgcgcgagctgggcgagcccatcaccctcttcggcgagcagccgcccgag
aggagagagcggcttcgcgaggtgctgtcgcggatggacgtgacgcaggccgtgccagcc
accgccgctcccgccccactggcggcgcccgccaccggcgcagccggcgccaagaagcgc
aacgacaagatgcaagagcagccctacttcacggagggaagtgccgatctgaaggcctcg
cgccgcctgatcgccgactactcgctgcgaaaagcccagcagcgggtgggacgagccaag
aggaagagagaggagggcaatttcgaggaggagctccgcaaagcagccgccagtcgcgag
tgtctgcggaggttctccaacgcggccagtcagatcggcgacgacagacctctgtcgtac
tgcgccttctctcccgactcctcgatcctggccaccgcctcgtggagcggccagtcgaag
ctgtggagcgtgccctcgtgcgacctcaagaccacactcaaaggccacggggaccgtgtg
ggagccatcgttttccatccgcgctcgtgcctcggacaggagtccggcgcactcaacctg
gcctcgtgctcctccgaccgcaccgtcaagctgtggtcgctcgacagtccgagccccata
gggtcgctggagggacacacggaccgagtgtcgcgattagcgttccacccgagcggacgg
ttcatcggcacgacggggttcgacaagacgtggcgcctctgggacgtggagaagggccgg
gagctgatggtgcaggagggccactcgcgcgaggtctacgggatcgccttccagtgcgac
ggctcgctcgccgccaccagcggcatggacggctacggccgcgtgtgggatctgcggacg
gggcgatcagtcatgctcctcaagggccatgccaagtcggtgctgggcatcgactttgcg
ctgaacggctaccagctggccacgggctcggacgaccacacggtcaagatttgggacctg
cgaaagaagcgatgctcctacaccatcccggcccactcgtcgctgatctcgcacgtcaag
ttccagcccagcgaggagggccagttcctgctgacggcctcgttcgacgccacgtgccgc
ctgtggtccacgcgcgactacgcgcccatcactaccctcgcgggccacgagggcaaggtg
ctgtgcgccgacatctcgccggatgggcgctacatcgcttcgtcgtccttcgacaggacg
tggaagctgtttgccgaggacctcgcctacttctga

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