Arthrobacter caoxuetaonis: NF551_07900
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Entry
NF551_07900 CDS
T08978
Symbol
hrpB
Name
(GenBank) ATP-dependent helicase HrpB
KO
K03579
ATP-dependent RNA helicase HrpB [EC:
5.6.2.6
]
Organism
acao
Arthrobacter caoxuetaonis
Brite
KEGG Orthology (KO) [BR:
acao00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
acao03019
]
NF551_07900 (hrpB)
Enzymes [BR:
acao01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
NF551_07900 (hrpB)
Messenger RNA biogenesis [BR:
acao03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
NF551_07900 (hrpB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HrpB_C
Helicase_C
DEAD
AAA_11
AAA_16
AAA_30
HA2_N
AAA_19
AAA_22
CON_HrpB
Helicase_RecD
ResIII
AAA_25
nSTAND3
Cas3-like_C_2
UvrD-helicase
DUF3638
Motif
Other DBs
NCBI-ProteinID:
USQ58717
LinkDB
All DBs
Position
1724428..1727067
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AA seq
879 aa
AA seq
DB search
MSVPGPSAAGYQSGPFDLDRIGAGLVFARSLSELAAALRETGNAVVQAPPGTGKTTLVPP
LAANLAARTEGPRRVVVTQPRRVAARTAARRLAALDGGAAGGAVGYTVRGESLAGPDTVV
EFVTPGILLRRLLADPSLQDTAAVVLDEVHERGLESDLLVGMLAEVRELREGLMLIAMSA
TLETSRFAELIAAESSVSPAPVIDCPSVLHPLDVRWQPTRAARLDERGVTRGFLDELAGI
AADAHARALAADPETDALVFVPGAREVSHVASRLMHLAGNAADVVELHGQVRPAEQDRAV
SGRLPHGRPRIIVATSLAESSLTVPGVRLVVDSGLAREPRRDAVRGMSGLVTVSCSRASA
QQRAGRAARQGPGTVVRAYPEAAYAAAPAQATPEAAAADLTTAALLLACWGTPGGRGLRL
PDPLPPAAVADAEKVLRGIGAIDSQGLATPAGRKLARIPADPQLARALLDGTRVIGDRAA
AEITAMVAGDYRPAGSDLGRLLSGLRAGTEPGASAWSIEVRRMERLARTHALDSGTGSDS
RTGHQPEPWESVGYMVALAFPARVARRVAGSAGDQYLLASGTRAGLPPQSSLAGREWLAI
ADVTRAQGRAAAGTGAVIRAAAPLEAGTAEAAASHLLSESVTAVFTNGKVAARRQRRLGS
IELESTPVRPTPAEGRTAVAQALQREGLGILGFSPSADALRRRLGLLHRLVGAPWPDVSE
PALLERVQEWLGPELEDLSQGARASGVDLLDPLRRLLPWPEAARLEELAPERLLVPSGSK
VQITYPEVDDDGGRPVVAVKLQECFGWAESPRLAGGRARILFHLLSPAGRPLAVTDDLAS
FWAGPYSQVRAEMRGRYPRHPWPEDPWSAVATARTKARM
NT seq
2640 nt
NT seq
+upstream
nt +downstream
nt
gtgagtgttcctggaccgtctgccgccggctatcagagcgggccttttgacctggaccgc
atcggtgccgggctggtcttcgcgcgttcgctttccgagctggccgctgcgctgcgggag
accgggaacgccgtcgtccaggcgcccccgggtaccggtaaaaccaccctggtgcctccg
ctggctgccaacctggcggcacggactgagggcccccgccgggtagtggtgacccagccg
cggcgggttgcggccaggacggcagcccggcggctggcggcgctcgacggcggggccgca
ggcggtgccgtcggctacaccgtcaggggcgaaagcctcgccggcccggacaccgtggtg
gaattcgtgaccccgggcatcctgcttcgccggctcctggctgatccttcgctccaagac
accgctgccgtcgtcctggatgaggtccatgagcgcggcctggagtccgatctgctggtg
ggcatgctggccgaagtacgggaactccgtgaaggcctgatgctcatcgccatgtcagcg
acgctggaaacctctcgcttcgccgagctcatagccgctgaaagctcagtttccccggcg
ccggtgatcgactgtccctcggtccttcatcccctggacgtccgctggcagcccaccagg
gccgcccgcctggacgagcgcggagtgacgcgcggattcctggacgaacttgccggaata
gcggcagacgcccatgcccgtgcgctggcagcggacccggaaactgacgcactggtcttt
gttcccggtgcccgcgaagtctcgcacgtggcctcccggctgatgcacctggccggaaac
gctgccgatgtggtggaactgcatggacaggtacgcccggcagagcaggaccgcgcagtt
tccggacgcctgccgcacgggcggccgcggattatcgtggcaacctcactggccgagtcc
tccctgactgtgccgggagtacggctggtggtggactccgggctggcccgtgagccgcgg
cgcgatgcagtccggggaatgtccggcctggtcaccgtcagctgttcccgggcctcggcg
cagcagcgtgccggccgtgcagcgcgccagggccccggaacagtggtccgcgcctatccg
gaggccgcgtacgccgccgctccggcgcaggccacgccggaagccgccgccgcggacctt
acgacggctgcccttctcctggcctgctggggaactcccggcgggcgcggattgaggctt
cccgacccgctgccgccggctgccgtcgcagacgcggagaaggtgctgcgcggcatcgga
gcaatcgacagtcaaggactggcgacgcccgccggccggaagctggcgcgcattcctgca
gacccgcagcttgcccgcgccctgctggacggaacgcgcgtgattggtgaccgggccgcg
gcggaaatcaccgccatggttgccggcgactaccggccggcgggctctgaccttgggcgg
ctcctctccggcctgcgggcaggaaccgaacccggagccagtgcctggtccattgaagtg
cggcgcatggaacgcctggcgcggacacacgccctggattcagggaccggcagcgacagc
cggaccgggcatcagcctgaaccttgggaatccgtgggctacatggtggcgctggcgttc
ccggcgcgggtggcccgccgggtggcggggagcgcgggggaccagtacctgctggcgtca
ggaacgcgtgcgggcctgcctccgcagagttcgctggctggccgtgaatggctggcgatc
gccgacgtcacgcgtgcccaggggagggccgctgccggcaccggcgccgtcatccgggcc
gctgctccgctggaggcgggcacggcggaggccgcggcgtcgcatttgctcagcgaatcc
gtgaccgctgtctttacgaacgggaaggttgccgcacgacggcagcggcggctgggcagc
atcgagctggagtccacgccggtccggccgacacccgcggagggccgcaccgccgtcgcc
caggcactgcagcgcgaagggctggggatcctgggattctcgccttcagctgatgccctg
cggcgccggctggggctgctgcaccggctggtgggtgcgccctggcccgatgtttccgaa
cctgccctgctcgagcgcgtccaggaatggctgggcccggaactggaggatctgtcccag
ggggcacgcgcctccggggtggacctgctggatccgctccggcgcctgctgccgtggccc
gaggccgcacggctggaggaactcgccccggagcgcctcctggttcccagcggctccaaa
gtgcagatcacctatccggaagtggacgacgacggcggcaggccggtggtggcggtgaag
cttcaggaatgcttcggctgggcagagtctccgcgcttggccggcggcagggcgaggatc
ctctttcacctgctgtccccggcaggccggccgctggccgtcaccgatgacctggcgtcc
ttctgggccgggccgtacagccaggtgcgtgccgaaatgcgcggacgctacccccggcat
ccgtggcctgaggacccctggtccgccgtggcgacggcccggacgaaggcccggatgtag
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