Arthrobacter caoxuetaonis: NF551_13105
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Entry
NF551_13105 CDS
T08978
Name
(GenBank) DEAD/DEAH box helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
acao
Arthrobacter caoxuetaonis
Pathway
acao03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
acao00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
NF551_13105
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
acao03019
]
NF551_13105
03009 Ribosome biogenesis [BR:
acao03009
]
NF551_13105
Enzymes [BR:
acao01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
NF551_13105
Messenger RNA biogenesis [BR:
acao03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
NF551_13105
Ribosome biogenesis [BR:
acao03009
]
Prokaryotic type
rRNA helicases
NF551_13105
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
CMS1
HEM4
UvrA_inter
Motif
Other DBs
NCBI-ProteinID:
USQ56671
LinkDB
All DBs
Position
complement(2847650..2849578)
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AA seq
642 aa
AA seq
DB search
MRNTPLPENTQEIVEENTEAVAEEANEILFSDFNLDARILAALTDVGYKTPSPIQAATIP
VLLEGRDVVGLAQTGTGKTAAFAVPALSRMAELAEVNGPTKDTQILVLAPTRELALQVAE
AFTSYAVHMDDFTVLPVYGGSPYGPQLAGLRRGAQVVVGTPGRVIDHISKGSLDLSNLQY
LVLDEADEMLRMGFAEDVEQILSTTPDEKQVALFSATMPGAIRKIAKKYLNNPAEITVKS
KTTTGVNTRQRYVQVMGPHKLDAMSRILETEDFDGVIAFVRTKMATEDLADKLKSRGYKA
AAINGDIPQQQRERTVEALRDGKIDILVATDVAARGLDVERISHVFNYDIPHDTESYVHR
IGRTGRAGRSGDAILFMTPREKYLLRAIEKATRQPVEHMQLPGIDVVNAKRLAKFSERIT
ETRNSEDLSVFRELVTNYIAENDVPAEEVAAALVVMAQAGRPLLMEEIPQAPARQRERSE
GRNDGFGSRGPTRPLTEGNATYRIAVGRRQRVMPGSIVGAIANEGGLSSAQIGGIDIRAD
HTLVELPADLSKDQLRALSRTRIGGELIHLELDNGRRPAREGGSHDRADRGGFKKDFKKR
DGERSFGDRGSDRPYKKKFDGDRSFSKPAGAGTGARKPRFRD
NT seq
1929 nt
NT seq
+upstream
nt +downstream
nt
atgaggaatactcctttgcctgagaacacccaagaaattgtcgaagaaaacaccgaagcc
gttgctgaagaagccaacgagattctgttctccgatttcaacctggatgcacgcatcctc
gccgcactgaccgacgtcggctacaagaccccgtcgccgatccaggctgccaccatcccc
gttctgcttgaaggccgcgacgtcgtgggccttgcccagaccggcaccggcaagaccgca
gccttcgctgtccccgccctttcccgcatggctgaactggccgaggtcaacggacccacc
aaggacacccagatcctggtccttgccccgacccgcgaactggccctgcaggttgcagaa
gccttcacctcctacgccgtgcacatggacgacttcaccgtcctgcccgtctacggcggc
tccccgtacggtccccagctggccggcctgcgccgcggcgcccaggttgttgttggtacc
ccgggccgtgtcatcgaccacatctccaagggttccctggatctgtccaacctgcagtac
ctggtcctggatgaagctgacgaaatgctgcgcatgggcttcgccgaagacgtggagcag
atcctctctaccaccccggatgagaagcaggttgccctcttctccgccaccatgccgggc
gcgatccgcaagatcgccaagaagtacctgaacaacccggctgaaatcacggtcaagtcc
aagaccaccaccggtgtgaacacccgccagcgctacgtgcaggtcatgggcccgcacaag
ctcgatgccatgtcccgcatcctcgagaccgaggacttcgacggcgtcatcgccttcgtc
cgcaccaagatggccaccgaggacctcgccgacaagctgaagtcccgcggctacaaggct
gccgccatcaacggcgacatcccgcagcagcagcgtgagcgcaccgtcgaggccctgcgc
gacggcaagatcgacatcctggttgccaccgacgtcgccgcccgcggcctggacgtcgag
cgcatcagccacgtcttcaactacgacatcccgcacgacaccgagtcctacgtgcaccgc
atcggccgtaccggccgtgcaggccgcagcggtgacgcgatcctgttcatgaccccgcgt
gagaagtacctgctgcgggccattgagaaggccacccgccagcccgttgagcacatgcag
ctgcccggcattgacgttgtcaacgccaagcgcctggccaagttctccgagcgcatcacc
gagacccgcaactccgaagacctctccgtcttccgtgaactggtcaccaattacatcgct
gagaacgacgttcccgccgaggaagtcgccgcagccctggtcgttatggcccaggccggc
cgcccgctgctgatggaagagattccgcaggctccggcccgccagcgcgagcgttccgaa
ggccggaacgacggcttcggttcccgcggcccgacgcgcccgctgaccgaaggcaatgca
acgtaccgcatcgccgtcggacgccgccagcgcgtgatgcccggctcgatcgtcggcgcc
atcgccaacgaaggcggcctgtcctccgcccagatcggcggcatcgacatccgtgccgac
cacaccctggtggagctgcccgcagacctgtccaaggaccagctgcgcgcactgtcccgc
acccggatcggcggcgagctgatccacctcgagctggacaacggacgccgccccgcacgt
gaaggcggatcccacgaccgcgccgaccgcggcggcttcaagaaggatttcaagaagcgt
gacggcgagcgttccttcggtgaccgcggttcggaccgcccgtacaagaagaagttcgac
ggcgaccgcagcttcagcaagcctgccggtgccggaacgggtgcccgtaagccgcgtttc
cgcgactaa
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