Actinomyces capricornis: MANAM107_16540
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Entry
MANAM107_16540 CDS
T09393
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
acap
Actinomyces capricornis
Pathway
acap03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
acap00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
MANAM107_16540 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
acap03021
]
MANAM107_16540 (rpoC)
03400 DNA repair and recombination proteins [BR:
acap03400
]
MANAM107_16540 (rpoC)
Enzymes [BR:
acap01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
MANAM107_16540 (rpoC)
Transcription machinery [BR:
acap03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
MANAM107_16540 (rpoC)
DNA repair and recombination proteins [BR:
acap03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
MANAM107_16540 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Apocytochr_F_C
Motif
Other DBs
NCBI-ProteinID:
BDA64820
LinkDB
All DBs
Position
2038660..2042616
Genome browser
AA seq
1318 aa
AA seq
DB search
MLDANVFDRIQLGLATAEDIRSWSHGEVKKPETINYRTLKPEKDGLFCEKIFGPTRDWEC
ACGKYKRVRYKGIVCERCGVEVTRSKVRRERMAHIKLAAPVTHIWYFKGVPSRLGYLLNL
APKDLEKVIYFAAYMVTEVDEEGRHDDLPSLRNELEVKKKHVEEAGLADVEARQQRLESD
LAQLEAEGADNAQREKLRKTAEREMTALRRKTQRTLEHMDKVWDRFVSLKVGDLEGDEVL
YRDMVADYGIYFKGAMGAEAIQARLRNFDLEAEAATLAEIVETGTGQRKTRAIKRLKVVN
AFRLTGTAPESMVLDNIPVIPPDLRPMVQLDGGRFATSDLNDLYRRVINRNNRLKRLMDL
GAPTIIVNNEKRMLQDAVDALFDNGRRGRPVTGVGNRPLKSLSDMLKGKQGRFRQNLLGK
RVDYSGRSVIVVGPQLALHQCGLPSQMALELFKPFVMKRLVELKEAQNVKAAKRMVERAN
PKVWDVLAEVIREHPVLLNRAPTLHRLGIQAFEPQLIEGKAIQLHPLVCGAFNADFDGDQ
MAVHLPLGAEAAAEARILMLSSNNILKPSDGRPVTMPSQDMIIGTYYLTSEPDPAVEVER
DAAGEPVVPSFSSFAEAVMAYDFGKLHVNAACDIRFEEGIVAPEGWQAPEGHQEGDPITL
RTSLGRALFNTALPESFPYVNYVVDKKALGNIVNALAENYPRVDVAASLDALKAAGFYWS
TWSGITVAFADVVSPASKPEILARYEAEAAEIEDQFELGALTEEDRYASLIDIWTKATAE
VADAMRENFPERNTVYQMVVSGARGNWDQIRQLAGMRGLVADPRQRLIDRPIKSNYREGL
SVLEYFIATHGARKGLADTALRTADSGYLTRRLVDVSQDVIVREDDCGTRKGLTKRIFSW
VEAGGERFKEPNEILGTTVFGTTLARNIVDDSGEVIVEAGTDLGDAEIRAAIDAGVEEIT
VRSVLTCDSEVGTCAACYGRSLATGKRVDIGEAVGIIAAQSIGEPGTQLTMRTFHTGGAA
GAADITQGLPRVQELFEARTPKGEAAVAEAAGTLAVEDDADGKRLVIKRDDGEEDVVVPV
SRRQRLLVADGDHVEPGQALTEGPVDPKKVLRLRSVAATQRHLVEEVQEVYRSQGVDIHS
KHIEVIVRQMLRRVTVLDSGDTRLLQGDLVDVMHYRKENRRVMAEGGKTATGRTELMGIT
KASLATDSWLSAASFQETTRVLTEAAMNGKSDPLLGLKENVILGKLIPAGTGLARYADIE
VEPTEEVKAEVFSRTGFNDGAFGEAVALDDFHFGGGDMRADFSEDLRPGFTSSEDFEF
NT seq
3957 nt
NT seq
+upstream
nt +downstream
nt
gtgctcgacgccaacgtcttcgacaggatccagctcggcctcgccaccgcggaggacatc
cgctcctggtcgcacggcgaggtcaagaagcccgagaccatcaactaccgcaccctcaag
ccggagaaggacggactcttctgcgagaagatcttcggccccacccgcgactgggagtgc
gcctgcggcaagtacaagcgggtgcgctacaagggcatcgtctgcgagcgctgcggcgtg
gaggtcacccgctccaaggtgcgccgcgagcggatggcccacatcaagctggccgcgccc
gtgacccacatctggtacttcaagggcgtgccctcgcgtctgggctacctgctcaacctg
gcccccaaggacctggagaaggtcatctacttcgcggcctacatggtcaccgaggtcgat
gaggagggccgccacgacgaccttccctccctgcgcaacgagctggaggtcaagaagaag
cacgtcgaggaggccgggctggccgacgtcgaggcccgccagcagcgcctggagtccgat
ctggcccagctggaggccgagggcgcggacaacgcccagcgcgagaagctgcgcaagacc
gccgagcgggagatgacagccctgcgccgcaagacccagcgcaccctggagcacatggac
aaggtgtgggaccgcttcgtgtccctcaaggtcggtgacctggagggcgacgaggtgctc
taccgcgacatggttgccgactacggcatctacttcaagggcgccatgggcgccgaggcc
atccaggcgcgcctgcgcaacttcgacctggaggccgaggccgccaccctggccgagatc
gtggagaccggcaccggccagcgcaagacccgtgccatcaagcgcctcaaggtggtcaac
gccttccgcctgacgggcaccgccccggagtcgatggtcctggacaacatcccggtcatc
ccgccggacctgcgccccatggtccagctcgacggcggccgcttcgccacctccgacctc
aacgacctctaccgccgcgtcatcaaccgcaacaaccgcctcaagcggctgatggacctg
ggtgcgccgacgatcatcgtcaacaacgagaagcgcatgctccaggacgccgtggacgcc
ctgttcgacaacggccgccgcggccgcccggtcaccggcgtgggcaaccgcccgctgaag
tccctgtccgacatgctcaagggcaagcagggccgcttccgccagaacctgctgggcaag
cgcgtggactactcgggccgctcggtcatcgtggtgggcccccagctggccctccaccag
tgcgggctgcccagccagatggccctggagctgttcaagcccttcgtcatgaagcgcctg
gtcgagctcaaggaggcccagaacgtcaaggccgccaagaggatggtcgagcgcgccaac
cccaaggtctgggacgtgctggccgaggtcatccgcgagcaccccgtgctgctcaaccgc
gcccccaccctgcaccgcctgggcatccaggccttcgagccccagctcatcgagggcaag
gccattcagctccaccccctggtgtgcggcgccttcaacgccgacttcgacggcgaccag
atggccgtccacctgccgctgggcgcggaggccgccgcggaggcgcgcatcctcatgctc
tcctccaacaacatcctcaagccctccgacgggcgcccggtgaccatgcccagccaggac
atgatcatcggcacctactacctcaccagcgagccggacccggccgtggaggtggagcgg
gacgccgccggtgagccggtcgtgccctccttctcctccttcgccgaggccgtcatggcc
tacgacttcggcaagctgcacgtcaacgccgcctgcgacatccgcttcgaggagggcatc
gtggcgcccgagggctggcaggcccccgagggccaccaggagggcgacccgatcaccctg
cgcacctccctgggccgggccctgttcaacaccgccctgcccgagtccttcccctatgtc
aactacgtggtggacaagaaggccctgggcaacatcgtcaacgccctggcggagaactac
ccgcgtgtggacgtggccgcctccctggacgccctcaaggccgccggcttctactggtcg
acctggtcgggcatcaccgtggccttcgccgacgtcgtctccccggcctccaagccggag
atcctggcccgctacgaggccgaggccgccgagatcgaggaccagttcgagttgggcgcc
ctgaccgaggaggaccgctacgcctccctcatcgacatctggaccaaggccaccgccgag
gtcgccgacgcgatgcgggagaacttccccgagcgcaacaccgtctaccagatggtggtc
tcgggggcgcgaggcaactgggaccagatccgccagctcgccggcatgcgcggcctggtg
gccgacccccgccagcgcctcatcgaccggccgatcaagtccaactaccgcgagggcctg
agcgtcctggagtacttcatcgccacgcacggcgcccgcaagggcctggccgacacggcc
ctgcgcaccgcggactcgggctacctcacccggcgcctggtggatgtctcccaggacgtc
atcgtgcgcgaggacgactgcgggacccgcaagggcctgaccaagcggatcttctcctgg
gtggaggccggcggcgagcgattcaaggagcccaacgagatcctgggcaccaccgtcttc
ggcaccaccctggcccgcaacatcgttgatgacagcggcgaggtcatcgtcgaggccggc
accgacctgggtgatgcggagatccgcgccgccatcgacgccggggtcgaggagatcacg
gtgcgctccgtgctcacctgcgactcggaggtgggcacctgtgccgcctgctacggccgc
tccctggccaccggcaagcgcgtggacatcggtgaggccgtgggcatcatcgccgcccag
tccatcggtgagcccggcacccagctgaccatgcgcaccttccacaccggtggtgccgcg
ggcgccgccgacatcacccagggtcttccccgtgtccaggagctcttcgaggcccgcact
cccaagggcgaggccgccgtggccgaggccgccgggactctggccgtcgaggacgacgcc
gacggcaagcgcctggtcatcaagcgcgacgacggcgaggaggacgtggtggtgcccgtc
tcccggcgccagcgcctgctggtggccgacggcgaccatgtggagccgggccaggccctc
accgagggcccggtggaccccaagaaggtcctgcgcctgcgctcggtggccgccacccag
cgccatttggtggaggaggtccaggaggtctaccgctcccagggcgtggacatccactcc
aagcacatcgaggtgatcgtgcgccagatgctgcgccgcgtcaccgtgctggactccggg
gacacccgcctgctccagggcgacctggtcgacgtcatgcactaccgcaaggagaaccgc
cgcgtcatggccgagggcggcaagaccgccacgggccgcaccgagctcatgggcatcacc
aaggcctccctggccacggactcctggctgagcgccgcctccttccaggagaccacgcgc
gtgctcaccgaggccgccatgaacggcaagagcgacccgctgctgggcctgaaggagaac
gtcatcctgggcaagctcatccccgccggcacgggcctggcccgctacgccgacatcgag
gtggagcccaccgaggaggtcaaggccgaggtgttctcgcgcacgggcttcaacgacggc
gccttcggcgaggcggtggccctggacgacttccacttcggtggcggcgacatgcgcgcg
gacttctccgaggacctgcgccccggcttcaccagtagcgaggacttcgagttctga
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