Acinetobacter sp. ASP199: IHE35_08795
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Entry
IHE35_08795 CDS
T11534
Symbol
hrpA
Name
(GenBank) ATP-dependent RNA helicase HrpA
KO
K03578
ATP-dependent RNA helicase HrpA [EC:
5.6.2.6
]
Organism
acaq Acinetobacter sp. ASP199
Brite
KEGG Orthology (KO) [BR:
acaq00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
acaq03019
]
IHE35_08795 (hrpA)
Enzymes [BR:
acaq01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
IHE35_08795 (hrpA)
Messenger RNA biogenesis [BR:
acaq03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
IHE35_08795 (hrpA)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DUF3418
OB_NTP_bind
Helicase_C
HA2_C
DEAD
AAA_22
AAA_19
nSTAND3
nSTAND_NTPase5
T2SSE
WHD_HA2
PhoH
TsaE
NACHT
AAA_30
AAA_25
SLFN-g3_helicase
NB-ARC
Motif
Other DBs
NCBI-ProteinID:
UNT60632
LinkDB
All DBs
Position
complement(1865419..1869315)
Genome browser
AA seq
1298 aa
AA seq
DB search
MARDLHRLNRLRKGKDANEKQYQELFEKSHLKVLERVERIPNIKLNQELPVTQYADKLIE
AIQKHQVIIVAGETGSGKTTQLPQIAMLAGRGLTGLIGHTQPRRLAARSVSQRIAEEVGE
KLGESISFKVRFNEQGSQDSLVRLMTDGILLAELANDRFLTKYDTIIIDEAHERSLNIDF
IMGYLKQLLPRRKDLKVIITSATLDVNRFSNYFNGAPIFEVEGRSYPVELRYRPISEMTI
GGSDDDEFDDFEENLPRAVVAAVEECFQDAQEKGHPEHADILIFASTEQEIRELQETLIK
HGPRHTEVLRLYARLALAEQQKIFNPSGGGRRIIIATNVAETALTVPNIRYVIDSGFARI
SRYNYRSRVQRLPIEAISQAAANQRKGRCGRIAPGVCIRLYSEEDFLSRPEFTEPEIKRT
NLASVILQMQSLKLGSLEDFDFIEPPDHRLVNDGRKLLIELGALAEKKSNPPESPFNKGG
LEKAPLSKRGVGGDSLTKIGYQMAKMPIDPRLARMILGGAHFGVLNEVLVIVAALAVQDP
RERPADKQMQADQKHALFREADSDFLFYIKLWETLHANRENMSENKRRTFARNHFLSWLR
LREWKKTHEQLVDLAKGLNLSFNEKKASYENLHRALLTGLLSFIANKTDERNVFMAVRQQ
KARVFPASTLHKTNTAWVMAFEMVETSQVYLRTLAKIEPEWILLAARDLVKHHYFEPHWS
KKAGVVNAYDQISLFGLVIEPKRQINYEKVDQEAAHEIFLRDALTTGNLGITPPFLKHNM
LKLEEVERVEDKLRRRDLVVDEETIYQFYASKVPPEVASRRSFEDWRATVEPQDSRYLFI
DDDALWLNDRPTTQQFPDYLRNGELRLAASYRFDPSHDEDGATVRIPLQALPQVDENLWS
WGIPGWRQDLIEALLKALPKDKRRNLVPIPDTARKLIAHIDATDLQKHIFSFLAFQLRGE
QIAEKDFSLDRIEQYLLPLIKVIDEKGRVIEQGRDLEELKARCRTETHSPVKQLKGEYKT
FPESFVFEASQKVTGVVVKQYQALVPTKDFATLEQKDESGVVIQTFNDQAEAIRQHRAGV
IRLVHMQLGDLIRQLKKQISKPLALAYSPLGDKAKLEQMLVYATLQMAIKELPVNVQEFQ
KLLEDVKKSFLTHGQTALRDITDIYTQWQEIRRKLLVLDGSVFGKNIDDIEDQLDLMNLA
DFVYSKPADVWIEFPRYLKALILRLDRLPNNLQRDDSAIDQIDPWMEKLFQFKNDARLKE
LYFMVEELRISLFSQPMKTKAPVSPNRLQKVWDRLGIS
NT seq
3897 nt
NT seq
+upstream
nt +downstream
nt
atggcacgtgacctccaccgtttaaatcgtttacgtaagggtaaggatgccaatgaaaaa
caataccaagaattattcgaaaaatcgcatttaaaagttctggaacgcgttgaacgtatt
ccgaatatcaagctgaatcaggaacttccggtcacccaatatgccgataaactgattgaa
gcgattcaaaaacaccaggtgattattgtggcaggtgaaacgggttccggtaaaaccaca
cagttaccccaaatcgccatgctggcaggacgcggtctgactggcctgattggccatacc
cagccgcgtcgtctggctgcgcgtagtgtatcgcaacgtattgcagaagaagttggagaa
aagctcggcgagtcaatttcctttaaggttcgttttaatgagcagggctctcaggattct
ctggttcgtttgatgacagatggtattctgttggctgaactggccaatgaccgctttctg
accaaatatgacaccattattatcgatgaagcacatgaacgttcattgaacatcgacttt
atcatgggctatctaaagcagttacttcctcgtcgtaaagatctgaaagtcatcattacc
tcagcaacactggatgtaaaccgctttagtaactactttaatggtgccccaatctttgaa
gttgaaggccgtagctatccggttgaactgcgttatcgtcccatttctgaaatgacgatt
ggcggtagtgatgacgacgaatttgatgactttgaggaaaacctgccacgtgcagtcgta
gctgctgtagaagaatgttttcaggatgcacaagagaaaggtcatcctgaacatgccgat
atcctgatttttgccagtactgaacaggaaattcgtgagcttcaggaaaccctgatcaag
catggtccacgacatactgaagttttgcgtttgtatgcacgattggctttagctgaacag
caaaaaatctttaatccgtctggtggtggtcgaaggattattatcgcgaccaacgtggca
gaaactgcactgacagtaccgaatattcgctatgtgattgatagtggttttgctcgtatc
tcgcgttataactatcgctcacgtgtacagcgcttgccaattgaagcgatttcccaggcc
gcagcgaatcagcgtaaaggccgttgtggtcgtattgcgccgggtgtctgcattcgccta
tattcagaagaagactttttaagtcgtcctgagtttactgagccggaaatcaagcgaact
aatctggcctcagtcattctgcaaatgcagagtctgaaactgggctcattggaagacttt
gatttcatcgagccgcccgatcatcgcctagtgaatgatggacgaaagttgttaattgag
cttggtgcactggctgagaaaaaatcaaatccccctgaatccccctttaataaaggggga
ctagaaaaagcccctctttcgaaaagaggggttgggggagattccctcaccaaaatcggt
tatcaaatggcgaaaatgccaattgatccgcgtttagcccggatgattttgggtggggca
cacttcggtgttttgaatgaagtgctggtgattgttgctgcacttgcggtgcaagatccg
cgtgaacgtccagccgacaagcagatgcaggctgatcaaaaacacgcactgttccgtgaa
gcagattcagatttcctgttctatatcaaactgtgggaaaccttgcacgccaatcgcgaa
aatatgagcgaaaataagcgtcgtacctttgcccggaatcatttcctcagttggctgcgc
ttgcgtgaatggaaaaaaacccatgagcaactggtggatttggcaaagggcttaaatctg
tcctttaatgaaaagaaagccagctatgaaaatctgcaccgtgccttgctaacaggccta
ctgtctttcattgccaacaagactgatgaacgtaatgtctttatggcggtgcgtcagcag
aaagcgcgtgtattcccggcatccactttacacaagaccaataccgcttgggtgatggct
tttgaaatggtggaaacctcacaggtttatttacggacgcttgccaaaattgaaccggaa
tggattctgctcgctgcacgtgacctggtcaaacatcattactttgaaccgcattggtct
aaaaaagccggtgtggtgaatgcctatgaccagatttcactgtttggtctggttattgag
ccgaaacgtcagatcaattacgagaaagttgatcaggaagctgcacatgaaatcttcctg
cgtgatgcattgaccacaggtaatctgggaattacgccgccgttcttgaagcataacatg
ctcaaacttgaagaagtggaacgggtggaagacaagctgcgccgtcgtgatctggtggtg
gatgaagaaactatttatcagttctatgcgtccaaagtaccgccagaagtggcaagtcgc
cgtagttttgaagactggcgtgctacggttgagccccaggattcgcgatatctgtttatt
gatgatgatgcattatggttgaatgaccgtccgaccacacagcagttcccggactatttg
cgtaatggtgaattacgtctggcagccagttatcgttttgacccaagtcatgatgaagat
ggggcgaccgttcgtattccgttacaggctttgcctcaagtagatgaaaatctctggtcc
tggggaattccaggctggcgtcaggacctgatcgaagctttattgaaggcattgccaaaa
gataaacgccgtaatctggtaccgattccggatactgcacgtaagctgatagcacatatt
gatgcgacagatttgcaaaagcatatctttagcttcttggcgtttcagttgcgcggcgaa
cagattgccgagaaggacttttcgctggaccgcattgagcagtatctgttgcctttaatt
aaggtgattgatgagaaaggtcgtgtaattgagcagggccgtgatctggaagagttaaaa
gcccgctgccgtaccgaaacacatagcccagtcaaacagctgaaaggtgaatataagact
ttcccggaaagctttgtatttgaagcttcgcaaaaagtgacaggcgtggtggtaaaacaa
tatcaggcactggtacccaccaaagactttgcgacgcttgaacagaaagatgaatctggt
gtggtgattcagacctttaatgatcaggctgaagccattcgccagcaccgtgccggggtg
atccgtctggtgcatatgcagctaggtgatctgattcgccaactgaaaaaacagatttct
aaaccactggcattggcatattccccattgggtgataaagccaagctggaacaaatgtta
gtttatgccacactacagatggcaataaaagagcttcctgtcaatgtgcaagagttccaa
aagttgttagaagatgtaaaaaaatctttcctcactcatggtcaaactgctttacgggat
atcaccgatatttatacccagtggcaggaaatacgccggaaattgttggttttagacggt
tctgtctttggcaagaatattgatgacattgaggatcaactggatttaatgaatctggct
gactttgtttattccaaaccggcggatgtatggattgaatttccacgctatctcaaggca
ctgattttgcgtcttgaccgtttgccaaataatttacaaagggatgattctgccattgat
caaattgacccttggatggaaaaattgttccagtttaaaaatgacgctcgcctgaaagaa
ctgtatttcatggttgaggaattgcggatctctttattttcacaaccgatgaaaactaaa
gcaccagtttctccgaatcgcctacaaaaagtatgggatcgtcttggaatcagttaa
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