KEGG   Antrostomus carolinensis (chuck-will's-widow): 104517600
Entry
104517600         CDS       T08541                                 
Symbol
RFC4
Name
(RefSeq) replication factor C subunit 4
  KO
K10755  replication factor C subunit 2/4
Organism
acar  Antrostomus carolinensis (chuck-will's-widow)
Pathway
acar03030  DNA replication
acar03410  Base excision repair
acar03420  Nucleotide excision repair
acar03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:acar00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    104517600 (RFC4)
   03410 Base excision repair
    104517600 (RFC4)
   03420 Nucleotide excision repair
    104517600 (RFC4)
   03430 Mismatch repair
    104517600 (RFC4)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:acar03032]
    104517600 (RFC4)
   03036 Chromosome and associated proteins [BR:acar03036]
    104517600 (RFC4)
   03400 DNA repair and recombination proteins [BR:acar03400]
    104517600 (RFC4)
DNA replication proteins [BR:acar03032]
 Eukaryotic type
  DNA Replication Elongation Factors
   RFC (replication factor C)
    104517600 (RFC4)
  DNA Replication Termination Factors
   ELG1-RFC complex
    104517600 (RFC4)
Chromosome and associated proteins [BR:acar03036]
 Eukaryotic type
  Sister chromatid cohesion proteins
   CTF18-RFC complex
    104517600 (RFC4)
DNA repair and recombination proteins [BR:acar03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   MMR (mismatch excision repair)
    RFC (replication factor C)
     104517600 (RFC4)
  Check point factors
   HRAD17(Rad24)-RFC complex
    104517600 (RFC4)
SSDB
Motif
Pfam: AAA RCF1-5-like_lid DNA_pol3_delta2 AAA_lid_RFC1 AAA_assoc_2 AAA_30 AAA_16 AAA_22 AAA_11 Mg_chelatase AAA_14 SLFN-g3_helicase DUF815 AAA_24 AAA_28 TIP49_C AAA_19 RuvB_N AAA_5 Gp44_lid DNAX_ATPase_lid nSTAND_NTPase5 AAA_3 AAA_7 ResIII Viral_helicase1 bpMoxR
Other DBs
NCBI-GeneID: 104517600
NCBI-ProteinID: XP_010160822
LinkDB
Position
Unknown
AA seq 223 aa
RPKNVDEVAFQDEVVAVLKKSLEGADLPNLLFYGPPGTGKTSTILAAARELYGPELFRQR
VLELNASDERGIQVIREKVKAFAQLTASGSRSDGKVCPPFKIVILDEADSMTSAAQAALR
RTMEKESKTTRFCLICNYISRIIEPLTSRCSKFRFKPLSDKIQQQRLLDVCEKEHVKISS
EAVSYLVKVSEGDLRKAITFLQSATRLMGGKEITEKIVTEIAG
NT seq 670 nt   +upstreamnt  +downstreamnt
tcgccccaaaaatgtggatgaagttgccttccaggatgaagttgttgctgtgctgaaaaa
gtccttggaaggtgctgatcttcccaatctgttgttctatgggccacctggaactggaaa
gacttccactattttagcagctgctagagaactctatggtcctgaattattccggcagag
agtccttgagttaaatgcctctgatgagcgtggaatacaagtgattcgggaaaaagtgaa
ggcttttgctcagctgactgcatctggaagtcgttcagatggtaaagtttgtcctccttt
taaaattgtaatcctggatgaagcagactcaatgacttcagcagcccaggcagccttaag
acgcacaatggaaaaagaatctaaaacaacacgtttctgccttatttgtaactacatcag
caggataatcgaacctttaacatctcgatgctccaaattccgcttcaagcctttgtcaga
caaaatccaacagcagaggctattggatgtttgtgaaaaggagcatgtgaaaatcagtag
tgaggcagtatcttaccttgttaaagtgtcagaaggggatttgagaaaagcaattacttt
tcttcaaagtgccactcgcctaatgggtgggaaagagatcacagagaagatagtcactga
aattgctggg

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