Antrostomus carolinensis (chuck-will's-widow): 104518394
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Entry
104518394 CDS
T08541
Symbol
MSH6
Name
(RefSeq) DNA mismatch repair protein Msh6 isoform X1
KO
K08737
DNA mismatch repair protein MSH6
Organism
acar
Antrostomus carolinensis (chuck-will's-widow)
Pathway
acar03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
acar00001
]
09120 Genetic Information Processing
09124 Replication and repair
03430 Mismatch repair
104518394 (MSH6)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
acar03400
]
104518394 (MSH6)
DNA repair and recombination proteins [BR:
acar03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
Mismatch and loop recognition factors
104518394 (MSH6)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
MutS_V
MutS_III
MutS_I
MutS_IV
MutS_II
PWWP
Motif
Other DBs
NCBI-GeneID:
104518394
NCBI-ProteinID:
XP_010172796
LinkDB
All DBs
Position
Unknown
AA seq
1263 aa
AA seq
DB search
MEGYPWWPCLIYNHPTERTIVRGKGKSTRVHVQFFDDNPTRGWVSIKYLRPYKGSSDGET
RKGGMFYSTKPEIKRAMVLADDAMSKDKTKRLELAVCSEPSDTEEEEEEEMEQMSESASG
NSDNGNSEEDVKSNKRVSSRESAIKAKRRRVLDSDSDHDGSDVEFKPDAKEAASSEEASS
GVDENESTDTETDPESVAESPVKVPSKRKRRERSKPAKRSSLENKCSETPKRAVTVSVEA
KSKLTSFAAPESFESQANAGSGSISGFAVWEHEKLDFLQEGKRKDAHRKRQGDPDYDPCT
LYVPEDYLNKCTPGMRRWWQLKSQNFDAVICYKVGKFYELYHMDAVTGVNELGLIFMKGT
WAHSGFPETAFGRFSDVLVQKGYKIARVEQTETPEMMETRCKTMAHPTKFDKVVRREICR
IITKGTQTYSVLDCDPSENHNKYLLCVKEKEDSSGQRAYGVCFVDTSVGKFYVGQFSDDR
HCSRFRTLVAHYTPVQVLYEKGNLSVDTQKILKGSLVSCIQEGLTSGSQFWNASKTLKVL
LEEGYFKEKQNSEDGCSLPPVIKSLTSESDSLGLTPGENSELALSALGGCVFYLKKCLID
QELLSLANFEEYVPVDIDTAKTTNSSSFFAKTDQRMVLDGVTLMNLEVLQNGTNGTTEGT
LLERIDSCCTPFGKRLLKQWLCAPLCNPKSINDRLDAVEDLLAAPDKMSEVSEHLKKLPD
LERLLSKIHSIGSPLKSQNHPDSRAIFYEELKYSKKKIADFLSALEGFKVMNEIVDVMEE
VASNFKSRVLKQLVTRKAKNPDGRFPDLSAELKRWDTAFDHNQARKTGVITPKAGFDPDY
DQALQDIKAVEEDLHQYLDKQRKLLGFKSMLYWGAGKNRYQMEIPESAISRNLPEEYELK
STRKGYKRYWTKEIEKMLAAMVNAEERRDAALKDCMRRLFYNFDKNSKAWQTAVECIAVL
DVLMSLANYSQDGDGPLCRPVILLPVDSASPFLELKNSRHPCITKTFFGDDFIPNDIVIG
SKDEDGGSEASCVLVTGPNMGGKSTLMRQAGLLVIMAQLGCYVPAEVCRLTPTDRVFTRL
GASDRIMSGESTFFVELSETASILQHATQHSLVLVDELGRGTATFDGTAIASAVVKELAE
KIGCRTLFSTHYHSLVEDYSHSAAVRLGHMACMVENESEDPSQETITFLYKFIEGACPKS
YGFNAARLANIPEEVIQKGHRKAKEFEKITIALRIFRYLCRVVDGATQDANAVQKLTTMI
SHL
NT seq
3792 nt
NT seq
+upstream
nt +downstream
nt
atggaaggttatccttggtggccttgtctcatatacaaccatccgactgaaagaacgata
gtccgaggaaaagggaaatccactcgtgtccatgtacagttttttgatgacaaccctaca
aggggctgggtcagtattaaatatctgagaccatataaaggttcatcagatggagagaca
cggaagggaggtatgttttatagtacaaagcctgaaattaaaagagcaatggtgttagcc
gacgatgcaatgagtaaagataaaactaagcggcttgaactggcagtatgcagtgaaccg
tcagacactgaggaggaagaagaggaagaaatggagcagatgagtgagagtgcatcaggc
aacagcgacaatggcaatagtgaggaggatgtgaagagtaataagcgagtatcaagcaga
gaaagtgccataaaagccaaaagaagaagagtgttggattctgacagtgatcacgatggc
tctgacgtagagttcaagcccgatgcgaaagaagcggcgagcagtgaggaagcaagtagt
ggggtggatgaaaatgaatctactgacacggagacagacccagagagtgttgcagaaagt
ccagtaaaagtcccttctaaacggaagagaagggagagaagcaagcctgctaaaaggagt
agcttggaaaacaaatgttctgaaacgcccaagagagcagtgactgtttctgtagaagcc
aagtctaagctgacatcgtttgcggcacctgaaagttttgaatcccaagcaaacgctggc
agcgggagcatcagtggcttcgcagtatgggaacacgaaaagcttgatttcctgcaggaa
gggaagaggaaggatgcacacaggaaacggcaaggtgaccctgactacgacccatgtact
ctgtatgtacccgaggactatctcaacaagtgtacgccggggatgcggaggtggtggcag
ctgaaaagtcaaaactttgatgctgtgatttgctacaaagttggaaaattctacgagttg
tatcacatggatgcagtcactggcgtgaatgagttgggcctgatctttatgaaaggtacg
tgggcccattcaggttttccagaaactgcatttggcagattctctgatgttctagtgcag
aagggctacaagatagctcgtgttgagcaaacggaaactcccgaaatgatggaaacgcgc
tgcaagaccatggcccacccaacaaaattcgataaggttgtgcgccgagaaatatgcagg
atcatcactaaaggcactcagacttacagtgttctggattgtgatccctctgagaaccat
aacaaataccttctgtgcgttaaggaaaaagaagactcctcgggacaacgtgcttacggg
gtctgctttgttgacacgtcagtggggaagttttatgtaggacagttctcagacgaccgg
cactgttcgaggtttaggactttagtagcgcattacactcctgtgcaggtactgtatgag
aagggcaacctgtctgtggatacacagaagatactgaaaggctcgcttgtttcttgcatt
caggaagggctgacctctggttcccagttctggaatgcatctaaaacactaaaagtcctt
cttgaagaaggatatttcaaggagaaacagaactctgaagatgggtgttctctgccccct
gtaatcaaatctctgacttcagagagtgactcgctgggattaactcctggtgaaaacagt
gaattagctttgtcagctcttgggggatgtgtcttctatctcaaaaaatgtctgattgat
caggagctgttatcgctggcaaactttgaggagtatgtcccagtggatattgataccgca
aaaactacaaattcaagtagtttctttgccaaaactgaccagaggatggtgctggatgga
gtcaccctgatgaacttggaagtcctgcagaatggaaccaatggaaccacagaaggtact
ttgctggaaaggattgattcttgttgtacgccgtttgggaagcgactcctgaaacagtgg
ctctgcgccccgctttgtaatcctaaatccatcaacgatcgtttggatgctgttgaggac
cttctggcagcaccagataaaatgtctgaagttagtgagcacctaaagaaacttcccgac
ctcgaaaggctgctcagcaaaattcacagtattgggtcaccacttaaaagtcagaaccat
cctgacagcagggccatcttctatgaagaactcaaatacagcaaaaaaaaaattgctgac
tttttgtctgcactggaggggtttaaagtaatgaatgaaattgtcgatgtcatggaagaa
gttgccagtaacttcaaatctagagtccttaagcagctcgtcacccgcaaagccaaaaat
ccagatggccgcttcccagacttgagtgcggagcttaaaaggtgggatactgcttttgat
cataaccaggctcgaaagacaggagtgattaccccaaaagcgggctttgaccccgattat
gatcaagcactacaggatattaaagctgttgaggaagatcttcaccagtacctggataag
caacgcaaactgcttggattcaaatccatgctgtactggggggcaggcaaaaaccgatac
caaatggaaataccagaaagtgcaatatcacgtaatctgcctgaagaatacgagttaaag
tcaaccaggaagggatataagcgctactggaccaaggagatcgagaagatgctggctgcc
atggttaatgctgaggagcgcagagacgcagcgctgaaggactgcatgaggcgcttgttc
tacaacttcgacaaaaacagcaaagcctggcagacagctgtggaatgcattgctgtgctg
gatgtcttgatgtcccttgctaactacagtcaagatggtgatggaccactgtgccgacct
gtaattctactgcctgtggatagtgcttctcccttcctggaacttaaaaattcacgccat
ccatgcattacaaaaactttctttggggacgattttattcctaatgacatcgtgataggc
agcaaagatgaggatggcggtagtgaagcttcctgtgtgttagtaactggcccgaatatg
ggtggcaaatctacgctcatgagacaggccggtctcctggttataatggctcaactggga
tgctacgtacccgctgaagtctgcaggcttacgcccactgacagagtatttacgaggctt
ggcgcctcagacagaattatgtcaggtgaaagtaccttctttgttgaactgagtgagact
gccagcattctccagcatgcaacacagcattcccttgttcttgtggatgaactgggcaga
ggcacagctacttttgatggaacagctatagcgagtgcggttgtgaaggaacttgcggag
aagatcgggtgccggactctgttctccacccactaccactcgctggtggaggattactcc
cacagcgcggctgtgcgcctgggccacatggcatgtatggttgaaaatgagagtgaagat
ccaagccaggaaacaattacattcctgtataagttcattgaaggagcatgtccaaagagc
tatggcttcaatgcagcaagacttgctaatattccagaggaagttattcagaaggggcac
agaaaagcaaaagagtttgaaaaaataaccattgcactgagaatatttaggtatctgtgc
agggtggtggatggtgcaacacaggatgcaaatgctgttcagaaacttaccactatgatc
agccatctgtaa
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integrated database retrieval system
