Antrostomus carolinensis (chuck-will's-widow): 104520004
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Entry
104520004 CDS
T08541
Symbol
TOPBP1
Name
(RefSeq) DNA topoisomerase 2-binding protein 1
KO
K10728
topoisomerase (DNA) II binding protein 1
Organism
acar
Antrostomus carolinensis (chuck-will's-widow)
Pathway
acar03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
acar00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
104520004 (TOPBP1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
acar03032
]
104520004 (TOPBP1)
03400 DNA repair and recombination proteins [BR:
acar03400
]
104520004 (TOPBP1)
DNA replication proteins [BR:
acar03032
]
Eukaryotic type
DNA Replication Initiation Factors
Other initiation factors
104520004 (TOPBP1)
DNA repair and recombination proteins [BR:
acar03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
BRCA1-B complex
104520004 (TOPBP1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
BRCT
PTCB-BRCT
TopBP1_BRCT0
BRCT_2
RTT107_BRCT_5
LIG3_BRCT
BRCT_TopB1_SLF1
ECT2_BRCT0
Motif
Other DBs
NCBI-GeneID:
104520004
NCBI-ProteinID:
XP_010162847
LinkDB
All DBs
Position
Unknown
AA seq
1521 aa
AA seq
DB search
MKGSKEPFFVKFVKSSGNSEYFFKALESIKEFQSEEHLQILEEETALNLKENDKSLYICD
PFRGVVFNHLKKLGCRIVGPQVVLYCMQSQQCVPRAEYPVYNMTMADVTVSCTSLEKDLR
EEVHKYVQMMGGRVYRDLSVSVTHLIAGEVGSKKYLVAASLKKPVLLPSWVKTLWDKSQQ
SIMRYTDVKMEDYACPVFLGCTICVTGLSSSDRKEVQRLTTEHGGQYMGQLKMNECTHLI
VQEPKGQKYECAKKWNVHCVSVQWFSDSIEKGFCQDETMYKIEAGSKLSNTPSTSTPTNH
ASKPDNNHSLSDVSHISNINLSVVNETACSSAMSSRLDPLPDELENLDMSSFHASEDLLD
GCRIYLCGFSGRKLDKMRRLINCGGGVRFNQLNEDVTHVILGENNDELKHFLDKTAHRPH
VVTPKWLLESFSKGYLHPVEQYIPQNYQLLENPILEQPGMKSILPKNNSLLKKEAVNIRK
HQKAAEDDFLSQYVNNDSAVDEVEKLTSSTFSDVTHLTVQGENQSSICNGSLGESSMLAE
GGIFFRKRFLVLGFGEEDKSCIADMIKKNAGKILPLQSRTIADYAVVPLLGCTVKLTVGD
VVTNIWLLTCVEQQLLLDPQSNPLFTPVPVMEGVTPLEDCVLSFSQFTGAERSSLVYLAG
LLGARVQEFFVRKASAKKGMFASTHLVVREPDGSKYEAAKKWNLPAVTVAWLLQSARTGK
RADESKFLVGNTEAEDKESSITQLCKTPAALKSPDSEQPTYLLEARKEKTVTPLDINRFQ
SKAFQAVISHHIGKKTTPLAQGGPPQEEPSLHLDTPSKFLSKDKLFKPSFDVKDALAALE
TPGGPDHKTRKLSTPLSEVISRNLKLALANSTRHTVALTASPQLTAAQPEAEEEPKPLAD
VVICVSKKLSKKQSELNAVAASLGADYRWCFDETVTHFIYKGGQNDNNKEYKSVKERGIH
IVSEHWLLESAQEYKRLPESLFPHTYNPKMSLDISAVQDVRLSSSSKLPSTGKPAEENEI
IPVDEDDAEDDVTTDQIKETVTTGEEQIVTSESKGVLTQALEMRENFQRQLQEIMSATSL
VKPQGQRGSLSRNSFDGSPTTPDSTRSVRNGRSRVLEALRQSRQALTDMNTEPSQSEQII
WDDPTAREERARLVSNFQWPNSPSQYTEQGQSNVNKNMDETAFKGSLAGAEIAGIAVPEA
GDGDLTEVLKNPVCRDPETPIKDHLIPTPQAPSIAFPLANPPVAPQPKEKAVTEDEKADE
EPEKHCKFQLSSLNPQERFDYCHLIEELGGIVLEKQCFDPSCTHIVVGHPLRNEKFLASM
AAGKWVLHRSYLEACRGAGCFVQEEDYEWGSSSILNVLPGININQKKLALAAMRWRKKIH
KGRQETGIAEGAFSGWKVILNVDQTKEAGFRRLLQSGGAKVFSGHSVSLFKEATHLFADF
SKLKPDDTRVNVAEAAAQGVNCLKPEYIADYLIQDPPPPMESYCLPEAESYIQNNTELET
GVSQKRKALGEMSRVKRSRIH
NT seq
4566 nt
NT seq
+upstream
nt +downstream
nt
atgaaaggtagtaaggagccgttttttgtgaagttcgtaaagtcttctgggaactcggag
tatttttttaaagctcttgagtctataaaagaatttcagtcagaagaacatctccagatc
cttgaagaagaaacagcactcaatttaaaagaaaatgataaatccctgtacatctgtgat
ccttttagaggcgttgttttcaatcacctcaaaaagcttggttgcagaattgttggacca
caggtagtcctgtactgcatgcagtcccagcaatgtgtcccaagagctgagtatcctgtg
tacaatatgaccatggccgatgtaacagtatcctgtaccagccttgaaaaagaccttagg
gaggaagttcataaatatgtgcagatgatgggtggacgtgtgtacagagacctcagtgtg
tcagtaactcatcttatagctggagaagttggcagcaagaaatacttagtagctgcttct
ctgaagaagcctgttttgcttccctcttgggttaagacgctgtgggataagtctcagcaa
agtataatgagatacactgatgttaagatggaagactacgcttgtcctgtgttccttggc
tgtacaatttgtgtgactggcttaagtagttcagacaggaaggaagtccagcgcctcact
actgaacacggtggccaatatatggggcagctcaaaatgaatgaatgcactcacctcata
gttcaagagccaaaaggtcagaagtatgaatgtgccaaaaaatggaatgtgcactgtgtg
tctgtgcagtggttttctgacagcattgagaaaggcttctgtcaggacgagacaatgtat
aaaatagaggctggatcaaaactgagtaatacacccagtacatcaacacctacgaatcat
gccagcaagcctgataataatcacagcctttcagacgtcagccacatctccaatatcaat
ttgagtgttgttaacgaaaccgcttgtagttccgctatgagcagcagactggatcccctt
cctgatgagctggaaaacttggatatgagttcttttcatgcctctgaagatttgttagat
ggatgtcgaatctatctgtgtggctttagtggcaggaagttggacaagatgagaagactt
attaattgtggtggtggtgttcgatttaatcaacttaatgaagatgttacccatgtcatt
ttgggggagaataatgatgaactgaaacactttttggacaagacagctcacaggcctcat
gtagtgacaccgaaatggttgctggagtcatttagtaaaggttatctacatccagtggag
caatatatccctcaaaactaccagctgttagagaacccaattttggagcaacctggaatg
aagtcaattctgcccaaaaataacagtctcttaaaaaaagaagctgtgaacattagaaag
caccagaaagctgctgaagatgacttcctctctcaatatgtaaataatgattctgcagta
gatgaagttgaaaaactaacatccagtaccttcagtgatgttactcacttgactgtccaa
ggggagaatcagtcttccatctgtaacggttctttgggagagtcttctatgctggctgaa
ggaggcatatttttcagaaagagatttcttgttctgggttttggtgaagaggacaagtcc
tgtattgcagatatgataaagaagaatgctgggaaaattctgccactgcaaagcagaacc
attgcagattatgctgtggtgcctttactggggtgcacggtgaagctgactgttggtgat
gttgtcacaaatatatggctgctaacatgtgtggaacagcagctccttttagatccccag
tctaatccacttttcacaccagtcccagtaatggaaggagttacccctttggaagattgc
gttctttcttttagccagttcactggtgcagagagaagctccctggtttatctggcagga
ctgctaggagcaagagtccaagaattctttgtgcggaaagccagtgcaaaaaagggaatg
tttgccagtacccatcttgtggtgagagaaccagatggttccaagtatgaagctgcaaag
aagtggaatttgccagcagtcactgtagcttggcttttgcagtctgcaaggacaggaaag
agagcagatgaaagcaagttcttggttggaaatactgaggctgaagataaggagagttcc
attactcagctttgcaagacaccagcagctcttaaatctcctgattcagagcaacctact
tatctccttgaagctaggaaagaaaaaactgtgacccctcttgatatcaacaggttccag
agtaaagctttccaagctgtaatctctcatcatattgggaagaagacaacccctcttgca
cagggggggcccccacaggaagaaccatctttacatcttgatactccatcaaaatttctt
tccaaagacaagttattcaagccttcttttgatgtaaaggatgctctggcagctttggaa
actccaggaggtcctgatcacaaaaccaggaaactgagcacacctctctctgaagtcatc
agcagaaacttgaaattggcactagcaaacagcacgaggcacacagtagctcttactgcc
agccctcagttgacagctgcacagccagaagcggaagaagagcccaagcctctagctgat
gttgttatatgtgttagtaagaaacttagtaagaagcaaagtgaactgaacgcagttgca
gcttctcttggggcagactacagatggtgctttgatgaaacagtaacacacttcatctac
aagggaggacaaaatgacaacaataaggagtacaaatccgttaaagaacggggtatacat
attgtttcagaacactggcttttagagagtgcccaagaatataaacggcttcctgaatct
ctctttcctcacacttacaatcccaaaatgagcctggatatcagtgctgtgcaagatgtc
aggctctcttcctccagtaaacttccatcaactggaaaaccagcagaggaaaatgagatt
attccagtggatgaagatgatgctgaagatgatgtaactactgaccaaataaaggaaaca
gtcactacaggggaagaacaaattgtaacaagtgaatccaaaggagttttaacccaagca
ctggaaatgagggagaacttccaaagacagctgcaggagatcatgtctgctacatcacta
gtgaaaccacaagggcaaagaggttccctttcaaggaacagttttgatggttctccaact
actcctgatagcacacgctctgtgcgaaatggccgcagtagggtcttggaagctctaagg
caatcccgtcaggcactcacagatatgaacacagagccatcgcagagcgagcagatcatc
tgggatgatcctactgcaagggaggaaagagcaagacttgtcagcaactttcagtggcct
aatagtccttcccagtacactgagcaaggtcagagtaacgtcaataagaacatggatgag
actgccttcaaaggatccttagctggtgcagagattgctggtatagctgttcctgaggct
ggggatggagatttgactgaagttctaaaaaatcctgtatgtagagatcctgaaacaccg
attaaagatcacttgatccccactccacaggcccccagcattgctttcccactggctaat
cctcctgtggcaccacagcccaaagaaaaggctgttacagaagatgaaaaggctgatgaa
gaaccagaaaaacactgtaaatttcagctgtcttctcttaatcctcaagaaagatttgat
tactgccatctgattgaggaattaggtggaatagtacttgagaaacagtgctttgatcca
agttgcacacacattgttgtgggacatcctcttcgaaatgaaaaattcttggcttcaatg
gcagctggaaagtgggtgcttcatcgttcctacctggaggcgtgtagaggagctggctgc
tttgttcaggaagaagattatgagtggggaagtagttccatacttaatgttttgcctggc
atcaatataaaccagaagaaactagcactcgcagccatgaggtggaggaaaaaaattcat
aaagggaggcaagaaactggtattgctgagggagctttcagtggctggaaagtaatcctc
aatgttgaccaaaccaaggaagcaggattcaggcgccttcttcagtcaggaggagcaaaa
gtgttttctggtcattctgtgtctctctttaaagaagcaactcatctctttgctgacttc
agtaagctgaagccggatgacaccagggtgaatgtagcggaggccgcagcccagggtgtg
aactgcttgaaaccagagtatatcgctgactacctcatccaggatccgcctcccccaatg
gagtcttactgcctgccagaagctgaatcttacattcagaataacaccgagcttgaaact
ggagtatctcagaaaagaaaagcactgggagaaatgagcagagtcaagcgatccagaata
cactga
DBGET
integrated database retrieval system
