Antrostomus carolinensis (chuck-will's-widow): 104522015
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Entry
104522015 CDS
T08541
Symbol
PRPF8
Name
(RefSeq) pre-mRNA-processing-splicing factor 8
KO
K12856
pre-mRNA-processing factor 8
Organism
acar
Antrostomus carolinensis (chuck-will's-widow)
Pathway
acar03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
acar00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
104522015 (PRPF8)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
acar03041
]
104522015 (PRPF8)
Spliceosome [BR:
acar03041
]
Complex B
U4/U6.U5 tri-snRNP components
U5 snRNP specific factors
104522015 (PRPF8)
Complex C
U5 SnRNP specific factors
104522015 (PRPF8)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
PROCN
PRP8_domainIV
U6-snRNA_bdg
U5_2-snRNA_bdg
PROCT
RRM_4
JAB
Motif
Other DBs
NCBI-GeneID:
104522015
NCBI-ProteinID:
XP_010162480
LinkDB
All DBs
Position
Unknown
AA seq
2046 aa
AA seq
DB search
DEDWNEFNDINKIIIRQPIRTEYKIAFPYLYNNLPHHVHLTWYHTPNVVFIKTEDPDLPA
FYFDPLINPISHRHSVKSQEPLPDDDEEFELPEFVEPFLKDTPLYTDNTANGIALLWAPR
PFNLRSGRTRRALDIPLVKNWYREHCPAGQPVKVRVSYQKLLKYYVLNALKHRPPKAQKK
RYLFRSFKATKFFQSTKLDWVEVGLQVCRQGYNMLNLLIHRKNLNYLHLDYNFNLKPVKT
LTTKERKKSRFGNAFHLCREVLRLTKLVVDSHVQYRLGNVDAFQLADGLQYIFAHVGQLT
GMYRYKYKLMRQIRMCKDLKHLIYYRFNTGPVGKGPGCGFWAPGWRVWLFFMRGITPLLE
RWLGNLLARQFEGRHSKGVAKTVTKQRVESHFDLELRAAVMHDILDMMPEGIKQNKARTI
LQHLSEAWRCWKANIPWKVPGLPTPIENMILRYVKAKADWWTNTAHYNRERIRRGATVDK
TVCKKNLGRLTRLYLKAEQERQHNYLKDGPYITAEEAVAVYTTTVHWLESRRFSPIPFPP
LSYKHDTKLLILALERLKEAYSVKSRLNQSQREELGLIEQAYDNPHEALSRIKRHLLTQR
AFKEVGIEFMDLYSHLVPVYDVEPLEKITDAYLDQYLWYEADKRRLFPPWIKPADTEPPP
LLVYKWCQGINNLQDVWETSEGECNVMLESRFEKMYEKIDLTLLNRLLRLIVDHNIADYM
TAKNNVVINYKDMNHTNSYGIIRGLQFASFIVQYYGLVMDLLVLGLHRASEMAGPPQMPN
DFLSFQDIATEVAHPIRLFCRYIDRIHIFFRFTADEARDLIQRYLTEHPDPNNENIVGYN
NKKCWPRDARMRLMKHDVNLGRAVFWDIKNRLPRSVTTVQWENSFVSVYSKDNPNLLFNM
CGFECRILPKCRTSYEEFTHKDGVWNLQNEVTKERTAQCFLRVDDESMQRFHNRVRQILM
ASGSTTFTKIVNKWNTALIGLMTYFREAVVNTQELLDLLVKCENKIQTRIKIGLNSKMPS
RFPPVVFYTPKELGGLGMLSMGHVLIPQSDLRWSKQTDVGITHFRSGMSHEEDQLIPNLY
RYIQPWESEFIDSQRVWAEYALKRQEAIAQNRRLTLEDLEDSWDRGIPRINTLFQKDRHT
LAYDKGWRVRTDFKQYQVLKQNPFWWTHQRHDGKLWNLNNYRTDMIQALGGVEGILEHTL
FKGTYFPTWEGLFWEKASGFEESMKWKKLTNAQRSGLNQIPNRRFTLWWSPTINRANVYV
GFQVQLDLTGIFMHGKIPTLKISLIQIFRAHLWQKIHESIVMDLCQVFDQELDALEIETV
QKETIHPRKSYKMNSSCADILLFASYKWNVSRPSLLADSKDVMDSTTTQKYWIDIQLRWG
DYDSHDIERYARAKFLDYTTDNMSIYPSPTGVLIAIDLAYNLHSAYGNWFPGSKPLIQQA
MAKIMKANPALYVLRERIRKGLQLYSSEPTEPYLSSQNYGELFSNQIIWFVDDTNVYRVT
IHKTFEGNLTTKPINGAIFIFNPRTGQLFLKIIHTSVWAGQKRLGQLAKWKTAEEVAALI
RSLPVEEQPKQIIVTRKGMLDPLEVHLLDFPNIVIKGSELQLPFQACLKVEKFGDLILKA
TEPQMVLFNLYDDWLKTISSYTAFSRLILILRALHVNNDRAKVILKPDKTTITEPHHIWP
TLTDEEWIKVEVQLKDLILADYGKKNNVNVASLTQSEIRDIILGMEISAPSQQRQQIAEI
EKQTKEQSQLTATQTRTVNKHGDEIITSTTSNYETQTFSSKTEWRVRAISAANLHLRTNH
IYVSSDDIKETGYTYILPKNVLKKFICISDLRAQIAGYLYGVSPPDNPQVKEIRCIVMVP
QWGTHQTVHLPGQLPQHEYLKEMEPLGWIHTQPNESPQLSPQDVTTHAKVMADNPSWDGE
KTIIITCSFTPGSCTLTAYKLTPSGYEWGRQNTDKGNNPKGYLPSHYERVQMLLSDRFLG
FFMVPAQGSWNYNFMGVRHDPNMKYELQLANPKEFYHEVHRPSHFLNFALLQEGEVYSAD
REDLYA
NT seq
6142 nt
NT seq
+upstream
nt +downstream
nt
ggatgaagactggaacgaatttaatgacatcaacaaaattatcatcagacagccgatcag
gacagagtacaaaatcgctttcccctacctgtacaataacctgcctcaccatgtccacct
gacctggtatcatactccaaacgtcgttttcattaaaacagaagatcctgatctcccagc
tttttacttcgacccgctgatcaaccctatttcacacagacactctgtcaagagtcagga
accgttgcctgatgatgatgaagagtttgagttgccagagtttgtggaacctttcctgaa
agacactccactctacacggataacacagccaatggcattgccctgctgtgggccccacg
gcccttcaacttgagatctgggaggactcggagagctcttgatatcccactggtcaagaa
ctggtatcgtgagcactgcccagcaggccagcctgtgaaagtgcgagtctcctatcagaa
gctactgaaatactatgttctgaatgcactcaagcacagaccccccaaggcccagaagaa
gaggtacctgttccgctccttcaaggctacaaagtttttccagtcgacgaagctggactg
ggtggaagttggcttgcaagtgtgtcgccagggctacaatatgctgaacttgctgatcca
cagaaagaacctgaactaccttcacttggattacaacttcaacctgaagcccgtgaagac
cctcaccactaaggaaaggaagaaatctcgttttggtaatgctttccatctgtgccgaga
ggttctgcggctgactaagctggtggtggacagccacgtccaatacagacttggaaatgt
ggatgcatttcagttggcagatggcttgcagtacatctttgcccatgtgggtcagctgac
aggaatgtaccgatacaagtacaaactgatgaggcagattcgtatgtgcaaggacctgaa
acatctaatctactacaggtttaacacgggacctgtgggcaaaggtcctggctgtggttt
ctgggctccaggctggagagtatggctgttcttcatgaggggcatcacaccgctgctgga
acgctggctggggaatctgctggccaggcagtttgaaggccgtcactcaaagggagtagc
aaagactgtcacgaagcagcgtgtggagtctcactttgacctggagctgagggcagctgt
tatgcatgacattctggacatgatgccagaaggaatcaaacagaacaaagccagaaccat
cctgcagcatctgagcgaggcctggcggtgctggaaagccaatatcccctggaaggtgcc
agggctcccgactcctattgagaacatgatcctgaggtatgtgaaggcaaaagctgactg
gtggacaaatacagctcactacaacagggagcggatccgtcggggtgccactgtggacaa
aactgtctgtaagaagaatctgggccggctgaccagactctacttaaaagctgagcagga
acggcagcataattacttgaaggatgggccttacatcactgcggaagaggctgttgctgt
gtacacaaccacagtgcactggctggaaagcaggaggttctcacccattcccttcccacc
gctgtcctacaagcatgacaccaaattgctcatcttagccctggagaggctgaaggaagc
ttacagtgtgaaatctcgcctgaatcagtcacagagagaggagttgggcttgattgaaca
ggcttatgataatcctcatgaagctctgtccagaatcaaacgacaccttttaactcagag
agccttcaaggaggtgggtatcgagttcatggatctctacagccacttagttcctgttta
tgatgttgaacccttggagaaaatcacagatgcttatctggatcagtatttgtggtacga
ggccgataagcgacgacttttccctccgtggatcaaaccggctgacactgaacctcctcc
gctgttggtgtacaagtggtgccaaggcattaataatctgcaagatgtttgggaaacaag
tgaaggtgaatgcaacgtgatgctggaatctcgatttgagaagatgtacgagaagattga
cctgacgttgctcaacaggctcttgcgtcttattgttgatcacaacattgctgactacat
gacagccaagaacaacgtggtgatcaactacaaggacatgaatcacacaaactcctacgg
gattattcgtgggctgcagttcgcttccttcattgtccagtattacgggcttgtgatgga
cctgctggtgctgggtctgcaccgtgccagtgaaatggctgggcctccccagatgccaaa
tgacttcctcagcttccaagacattgccactgaggtggcccatcccatccgcctcttctg
cagatacatcgaccgtattcacatcttcttcaggtttacagcagatgaggcgagagactt
gattcagcgttacctgacagagcatccagatcccaacaacgagaacattgtaggctacaa
caacaagaagtgctggccccgggatgctcggatgcgcctcatgaaacatgatgtgaacct
tggtcgtgctgtattctgggatatcaagaaccggctgcctcggtccgtcaccacggtgca
gtgggagaacagcttcgtgtctgtttacagcaaggacaaccccaatttgctgtttaacat
gtgtgggtttgagtgccgcatcttgcccaagtgccgcaccagctatgaggagttcaccca
caaggatggtgtctggaacctgcagaatgaggtcaccaaggagcgcacagctcagtgttt
cctgcgtgtggatgatgagtctatgcagaggtttcacaacagagtgaggcagatcctcat
ggcatctggctccacaaccttcactaagattgtcaataaatggaacacagctctgattgg
cttgatgacgtatttccgggaggctgttgtaaatactcaggagttgcttgatttgctggt
gaagtgtgagaataaaatccagactcgaatcaaaattggtctgaattccaaaatgcccag
ccgttttccaccagtggtgttttacacccctaaagagctgggggggctgggcatgctctc
catgggccacgttctcatcccacagtctgacctgaggtggtccaagcaaacagatgttgg
catcactcatttccgctcaggaatgagtcatgaggaggaccagctcatcccaaatttgta
tcgttacatccagccatgggaaagtgaattcattgactctcagagagtgtgggcagagta
tgccctcaagcgacaagaggctatagcccagaacaggcgtctgacgctggaggatctgga
ggactcgtgggacaggggaattcctcgtattaacacccttttccagaaggaccggcatac
cctggcttatgataaaggatggagagtcaggactgacttcaaacagtatcaggtcctgaa
acagaacccgttctggtggacgcatcagcgccacgatggaaaactctggaacctgaacaa
ctaccgcacggatatgatccaggcacttggtggagtggaaggaatcctggagcacactct
cttcaagggcacttacttccccacatgggagggtctcttctgggagaaggccagtggctt
tgaggagtccatgaagtggaagaagctgacaaatgcccagagatcgggtttgaaccaaat
tccaaacagaagattcaccttgtggtggtctcctaccattaatagagccaacgtgtacgt
tgggtttcaggtgcagctggatttgacaggtatctttatgcacggcaagatccccacgct
gaagatttctctcattcagattttccgagctcacttgtggcaaaagatccatgagagcat
cgtaatggatttgtgtcaggtgtttgatcaagaactggatgctctggagattgaaacagt
gcagaaagagacaatccatcccaggaagtcatacaagatgaattcttcatgtgcagatat
ccttctctttgcttcctataagtggaatgtgtcacgtccatcattgcttgcagattctaa
agatgtgatggacagcaccaccactcagaagtactggatagatatccagctgcgctgggg
agattatgattcccatgatatcgagcgctatgcgagagccaagttcctggactacactac
agacaacatgagtatctatccatctcccactggtgtgctcattgctattgatctggccta
taatttgcacagtgcttatgggaactggttccctgggagcaaacctctgatccagcaggc
tatggccaaaataatgaaagcaaaccctgcactgtatgtgttgagagaacgaatccgcaa
gggcttgcagctgtactcgtcagagcccacagaaccgtacctttcctcccagaactatgg
agagctcttctccaaccagatcatctggtttgtggatgacaccaatgtgtaccgagtgac
cattcacaagacttttgaagggaatttgaccacaaaacccatcaatggagccattttcat
cttcaatcccagaactggacagctcttcctgaagatcatccatacatctgtgtgggcagg
acagaagcgtctaggacagctggccaagtggaagactgctgaagaagtagctgccttgat
tcggtcacttcctgtggaggagcagcctaagcagatcatagtgactcggaagggcatgtt
ggacccacttgaggtgcacttgctggatttccccaatattgtgatcaaaggctcagagtt
gcagctgcccttccaggcctgtctgaaagtggagaagtttggtgatctcatcctgaaggc
tactgaaccccagatggttctcttcaatctctatgatgactggctgaaaaccatctcttc
ctacacggcattctctcgcctgattctgattctccgggcactacatgtgaataacgatag
agccaaagttattctgaaaccagacaagacaaccataacggagcctcaccacatctggcc
aaccctgacagatgaggagtggatcaaggtggaggtgcagctgaaagatctcatccttgc
tgactatgggaagaagaacaatgtgaacgttgcatccctgacacaatcagagatccgaga
cattatcctgggcatggagatctctgccccctctcagcagcgacagcagattgcagaaat
tgagaagcaaaccaaggagcagtcacaactgacggccacgcagacccgcactgttaacaa
acacggggatgaaatcatcacctctacaaccagcaactacgaaacccagaccttctcctc
caagacggagtggcgagtcagagcaatttctgctgccaacctccacctgagaacaaacca
catttatgtttcatcagacgatataaaggaaacaggctacacctacattcttcccaagaa
cgtgttgaagaaattcatctgcatctcagatctgcgggcccagattgcaggttacctgta
tggagtgagccctcctgataacccccaagtgaaggagatccggtgcattgtgatggtgcc
ccagtggggaacacaccagactgtgcatctcccagggcagctgccgcagcatgaatatct
caaggaaatggaacctctggggtggattcacacccaaccaaacgagtcccctcagctctc
gccgcaggatgtcaccacccatgccaaggtcatggctgacaacccttcctgggatggtga
gaaaaccatcatcatcacctgcagttttacgccgggctcctgcacgctgacagcctataa
actgaccccgagcggctacgagtggggcaggcagaacacggacaaagggaacaaccccaa
gggctacctgccatcccattacgagagggtgcagatgctgctgtcggatcgcttcctcgg
cttcttcatggtcccagcccaagggtcctggaactacaacttcatgggtgttcgccacga
ccccaacatgaagtacgagctgcagctcgccaaccccaaggaattttaccacgaggtcca
tcgtccttctcatttcctcaacttcgccctgctgcaggagggggaggtctactcggccga
ccgggaggatctctacgcctga
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integrated database retrieval system
