Antrostomus carolinensis (chuck-will's-widow): 104522263
Help
Entry
104522263 CDS
T08541
Symbol
SETX
Name
(RefSeq) probable helicase senataxin
KO
K10706
ATP-dependent RNA/DNA helicase, senataxin [EC:
5.6.2.5
5.6.2.3
]
Organism
acar
Antrostomus carolinensis (chuck-will's-widow)
Brite
KEGG Orthology (KO) [BR:
acar00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
acar03021
]
104522263 (SETX)
Enzymes [BR:
acar01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
104522263 (SETX)
5.6.2.5 RNA 5'-3' helicase
104522263 (SETX)
Transcription machinery [BR:
acar03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
104522263 (SETX)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
AAA_11
AAA_12
AAA_19
AAA_30
Viral_helicase1
UvrD-helicase
AAA_22
AAA_16
RNA_helicase
Motif
Other DBs
NCBI-GeneID:
104522263
NCBI-ProteinID:
XP_028939987
LinkDB
All DBs
Position
Unknown
AA seq
2833 aa
AA seq
DB search
MSTCRWCTPSGSDTTEFLKNYASKRLSLEDLEGSNDDLCYCLECVVEYHKAREKLPRLHE
VLWELETSRLVAHIEKSMQEEAGEDDELFIVDENRDTQLIGYVGPDFENNLRVPLLEILK
YPYLLLHERVSELCVEVLCRMEQSHNSFQVFEKYPGIYLFLVHSNEVIRRWAILTARNLG
KVDRDDYYDLQEVLTCLFKVIELGLFESPDIYSSSMIEKGKLILLPSHLYETANYKNYWL
GICMLLTVLEEQAMDSLLLGPDKQNDFMQSILHTMEKEAADDSTDPFWPALHCFMVILDQ
LGSKVWGQLIDPVQAFQTIINSVSYNNEIKNIRSSYKRTKSEPESDYNDDMVTCSQIVYN
YNTEKPQKDTGWKAAICPDYCPNLYEDMQTLANVLQSDIGRDMRVHHSTFLWFIPFVQSL
MDLKDLGVAYIVEVIHYLCSEIKDILSERIQQCDKISEFFLLILVSIIELHRNKKCLHLL
WISSQEWVEAVVRCAKLPAIAFTRCTEKAAGHCVRGSSAVSLQASNSVQHACVQLIRSLL
REGYQIGQHALCKQYLDKLNLLLRGNLSLGWQLNVQETQELQMCLKQVIRSVKDRALNAP
LPAGNNANSATLPTISIKQEKPACDDCDMNVQGRGHFCSPFAVILKEDEDCQENPFPGRK
NAWEEECGDASKSSRSWISTEGLLVNIKKEDNALTTQEYVCPQNSLATKVCGKVQEDRNN
DLVAGKCNMDNRCFRSSTQYSDFRRGGELENKFEAGAITPAHMAAEARIGSPEHVDSSGV
KESNMSPTSFSKFKVDAHRLTNLKNKIQKTERLSKVLQPTKPCDLKNYSLATSASKAEVG
QPKFCTGYLCTSKDCHKHQGVNTVCENEISIDTPRSHESTQEKSVDSAFPSRLVPIKQES
KETPLDCSGCSKNEAGMQENEDDDGILLSGISDTLLKKESTEERSSSLLKSVVKNETDMQ
TSDQEQPNLNDLVKYDCKGQISKTLCMDKTSANGHVPSSSENKRVTSNPASWIRPLSVKR
ESSDRLFKFSEYFKRESSVGKKEENFVKMVSEDNALTDSQVDRELSKLSLAAYAKSVNFP
FDSNQEGSVHHNVCDIKRKVKGAVRSSSDGQSTKSLCDADSLKNEVIIISDSSDEEKDVA
DKEETKKPNENVCPEKQPSTSSCISDSHIKIESKTPSSPLSLEDCESQYFEFETEFDVFS
VWQDTQAYSTEATQAYSTEATQEYKQDHASTSVDGSNSDGFLNDHTNEWGYDVDYLSDDT
MEEEANLMEKQMENTSHQKEADNTKEITNSTLQESNSKGNAKDQLEDFADKGAVAKDSTL
DSKLTEPRASTSNISLASKLALKKNNASPQKNIAKSKVARAVQRSPKKPPVLKTAQNKKL
LQSTSKNFQPGRSMPAVVPPKKVRQCPAPASTVEKLGLKKAPRKAFELSQRSLESVAQLR
SHGKAAGRVAVAQKQKIKLIAPQTLSVKHNKKLLSCQELQYIRQTRPKKNVRGKNLTGSS
ESRNKKVSKVDAKSMKQKPKSAELPSVEGSAEKQREKKWEETVCPFASERKFESLCVEEE
MTCLSETPSSSDSNRKSEDNGVMLPPLPLVSSLSSTALVGHNKDEPSGKGCIVQPECEKT
TSKEGGCKPNKNGEDDDDDGLFLTQLDPVDMELCSQEESVQDITVASKETEDMDTAESLQ
QNESLAVVKCKYKDCMEKVEKPGEYCSKHSATSSEADDLFAKPSLLPPSKTRKPSTTKIF
SSASSSRNAAFSKDLEDGKKLLPPSKSKVNAAKPVVVRLPHAKAVPIGHQTCKTSSYSNI
PQPHFSNNVLQSQNRNHDNASNISRRPAREAHRSSFLGAQQHDHSIFVKEVLKWTYEMFA
NSNQFGPPNNLLQSIVAPVPVQFQGYNDYFNTFFPLLMLNAFETLAQEWVENQRVREKSY
YFYLQNFCADLNTADFTAHFQESDLARQLHPKEDDLIFLVVQKKKDTFREESEMENHTVN
HVGLVTRFSHASGYLTRQKEQRTVCHLSVQTRGNLSFFINKQVKCVVVGSLVTTHRTFKG
LLLLSRSPLLKPILSPSYNDFCPRDLPVASESAALDMNEYNEDQKRAIETAYAMVKQHPG
LPKICLIHGPPGTGKSKTIVGLLSRVLRENTRNEKATPRTNSKIKPNRFLVCAPSNAAVD
ELMKKIIVAFKEKCQNKQEPLGNCGDIKLVRLGAEKAINSEVRGFSLDKQVEHRMKRKPA
DCDQDIQKKKAALDRQLDMLSRQRAMHRCEKKESQMLDDEIGRLSKERQQLASQLKEVRG
HSQKVQANIILESDIICCTLSTSGGSLLESVFWRQGLHPFSCVIVDEAGQSCEVETLIPL
IHRCNKLILVGDPRQLPPTVKSIKAQEYGYDQSLMARLHRNLEEQVQRNVLRSLPVVQLT
VQYRMHPDICLFPSNYVYGRTLKTDKVTEENRCSSEWPFQPYLIFDVGDGREERENDSFS
NPQEVKLVMELIRTIKEKRKDMGLRRIGIITPYSAQKRKIQVQLDRVFKNNSPGEVDTVD
AFQGREKDCIIVTCVRANSTKGSIGFLASLQRLNVTITRARFSLFILGRLKTLMENKDWN
ELIQDAQKRGAIIKTSEKSYRKDAVKILKLKPTMQPLPKTGTKKPPLQACSSSIQRGELA
NPREASSLRELAAGAGQAVPQGSRGPQQPQGAQGADSRRGSASAPVEAAVLPDQEKPRDP
RLASLASRTETKGKEPTSKVSSRSAQSNPGSMSQQSLHVSPAARDQISRTGTSKKPQQTV
GQCDVPSASPHAARHEGDWRASVLKSSSKAHSEGGQSNSSKWNKDSRVLTRRTSEESPQN
TDSNSAKRRKTSH
NT seq
8502 nt
NT seq
+upstream
nt +downstream
nt
atgagcacatgtcgctggtgtactcctagtggttctgacaccaccgagttcctgaagaac
tatgcttctaaacggttgtccctggaagatcttgaaggatccaacgatgatctctgttac
tgtctggagtgtgtggttgaataccacaaagcgagggagaaattgccgaggttgcatgag
gtcttgtgggagttggaaacctcccgtcttgttgcccacattgagaaatccatgcaagaa
gaagctggagaagatgatgagttgtttatagtggatgagaatagagacacacagctgatt
ggttacgtgggcccagattttgagaataacttgcgagtgccccttctagaaatactgaaa
tatccatatctgctgctgcacgagagagtcagtgagctgtgtgtagaagtgctctgtaga
atggaacaaagtcacaattcctttcaggtctttgagaaatatccaggaatttatctcttt
ttggtacactcgaatgaagtaattcgtcgatgggccatcctaacagcgaggaatttaggg
aaagttgacagggatgattactatgacttacaggaagtgctgacttgcttgttcaaagtt
attgagttggggctttttgagagtccagacatttacagctcttcaatgattgaaaagggt
aaactcatccttctgccatctcatttatatgaaactgccaactacaagaactattggcta
gggatttgtatgttgctaacagtgctggaagaacaagctatggactccttgttactgggc
ccagacaaacaaaatgatttcatgcagtctatacttcacaccatggagaaagaagcagct
gatgattctactgaccccttctggccagcgctccattgtttcatggttattttggatcag
ctcggatctaaagtatggggtcaacttattgatcctgtccaagcctttcaaaccattatc
aacagtgtgagctacaacaatgaaataaaaaatatacgcagtagctataagaggacaaaa
tccgaaccagagtcagactacaatgacgacatggttacttgcagtcagattgtgtataat
tataacacagaaaagcctcaaaaggatactggatggaaggccgctatttgtccagactac
tgccccaacttgtatgaagatatgcaaacactggctaatgtgcttcagtctgatattggc
agagatatgcgtgtccatcacagcacctttctgtggttcatcccttttgttcagtcgctt
atggatctcaaggacttgggtgtagcatatatagtagaggttattcactacctctgctca
gaaatcaaagatattctcagtgaaagaatccagcagtgtgacaaaatctctgaatttttt
ctcctgatcttggtgtcaattattgaactacacagaaacaaaaagtgtctgcatttgcta
tggattagctcccaagaatgggtggaagcagtggtgagatgtgcgaagcttccagctata
gcatttacccggtgtactgaaaaagcagctggacactgtgtgagaggttcatcagcagta
tctttacaagcttctaactctgtacagcatgcctgcgtgcagttgatacgcagccttctt
agagaaggctatcaaattgggcagcatgctctttgcaagcaatacctagacaagctcaat
cttcttctgcgaggaaatctatctttaggttggcaactgaatgtccaggaaacccaggaa
ttacaaatgtgtttaaagcaagttataagaagtgtaaaggacagagcgttgaatgcccct
ctgcctgcaggaaacaatgcaaactctgcaactttacctaccatttctataaagcaagag
aagcctgcatgtgatgattgcgacatgaacgtacaaggcagaggtcacttttgttcacca
tttgctgtcatactgaaggaagatgaagattgtcaagagaaccctttccctggaagaaaa
aatgcctgggaagaggaatgtggagatgcatctaaaagttcaagatcttggatatccacg
gaaggcctcttggtgaatattaaaaaggaagataatgccttgacaactcaggaatatgtc
tgcccacagaactctttggcaacaaaagtatgtgggaaagttcaagaagataggaacaat
gatcttgtggcaggaaagtgcaatatggataatcggtgctttcgttcaagcacccagtat
tcagatttcagaagaggcggagagttggaaaacaaatttgaagcaggagccataacacca
gcgcatatggctgcggaagctcgtattggttctccagaacatgttgacagctcaggtgta
aaggaaagcaatatgtctcccacttccttttcaaagtttaaagtagatgcgcatagactc
acgaatttaaaaaacaagattcagaaaactgaaaggctctcaaaagtattgcagccaaca
aagccatgtgacttgaaaaactacagtttagcaacaagtgcttcaaaagcagaagtaggg
caacctaagttttgcactggctatctctgtacaagcaaagattgtcataaacatcaggga
gtgaatactgtctgtgaaaatgaaatctctattgatactccaaggagtcatgaaagtaca
caggagaaaagtgttgacagtgcttttccatccagactcgtccccattaaacaggaatca
aaagaaacaccattagattgttctggctgctctaaaaatgaagctggtatgcaggaaaat
gaagatgatgatggtattttgctttcagggattagtgacaccttactgaaaaaagaatcc
actgaagaaagatcaagttcattgttgaagtctgtggttaagaacgagactgatatgcaa
acttcagaccaggaacagcccaatttaaatgacttggttaaatatgactgtaaaggtcaa
atttcaaagacactctgtatggataaaacttcagcaaatggtcatgttccatctagctct
gaaaacaagagggttacatccaaccctgcttcctggatcagaccgctatcagtgaagcgt
gaatcaagtgacaggttgttcaaattttcagaatatttcaagagagaaagttcagtgggg
aagaaagaggagaattttgtgaagatggtttctgaagataatgctctgacagactcgcag
gttgatagagaactcagtaaattatctttagctgcgtatgccaaaagtgtcaattttccc
tttgattcaaaccaagaaggctcagtgcatcataatgtatgtgatattaaaaggaaagtg
aaaggtgctgtaagatcttccagtgatggccaaagtaccaagtctctctgtgatgcagat
agccttaaaaatgaagtcattataatttcagattcttctgatgaagaaaaagatgtggct
gacaaggaggaaacaaaaaaaccaaatgaaaatgtgtgtcctgaaaagcaaccttcaact
tccagctgcatttctgatagtcatatcaaaatagaatcaaagacaccaagctcccccttg
tctctggaagactgtgagtctcagtactttgagtttgaaacagaatttgatgtcttttca
gtttggcaagatactcaagcatatagtacagaagcaactcaagcgtatagtacagaagca
actcaagagtataaacaagatcatgcttcaacatcggttgatggtagtaattcagatggc
ttcctgaatgatcacacaaatgagtggggttatgatgtggattacctaagtgatgatacc
atggaagaagaagctaacttgatggaaaagcagatggaaaatacttctcatcagaaagaa
gctgataatacaaaagaaataactaattcaacattgcaggaatctaatagtaagggaaac
gcaaaagatcaactggaggattttgcagacaaaggtgctgttgctaaagactccaccctg
gactcaaaattgactgaacccagagcatctacatctaacatctcattagcttcaaagttg
gcccttaagaaaaataatgcaagcccacaaaagaatatagcaaaatctaaggtagcaaga
gctgttcaaagaagccctaaaaaacctccagttcttaaaacagcacaaaataaaaaacta
cttcaaagtacgtcaaaaaattttcaacctggcaggtcaatgcctgctgtggttcctcca
aagaaggttcgtcagtgtcctgcaccagcatcaactgtagaaaaactaggtctgaagaag
gcaccccgcaaagcgtttgaattatctcagcgctctttagagagtgtagctcaattgcgc
agccatggtaaagctgcagggagagttgcagttgcacagaaacagaagattaaactaatt
gctcctcagactttgtctgtaaaacataataaaaaattgctaagctgccaagaacttcag
tatataaggcagacaaggcccaaaaaaaatgtcagagggaaaaatcttacaggaagttct
gagagtagaaacaaaaaagttagcaaagtggatgcaaaatctatgaaacaaaagccgaaa
agtgctgaactgccatctgttgaaggatctgctgaaaagcaaagagagaaaaaatgggag
gagactgtttgtccttttgccagtgagagaaaatttgaaagcctctgtgtagaggaggaa
atgacatgtctctctgaaacgcctagttcttcagactcaaacagaaaatcagaggataac
ggtgtgatgcttcctccactacctctggtttcaagtctctcttccactgcacttgttgga
cataataaagatgaaccgtcaggaaaaggttgcattgtccagcctgagtgtgagaagaca
acttcaaaagaaggtggctgtaaaccaaataaaaacggtgaagatgatgatgatgatggt
ctatttttaactcagttagatcctgtggatatggaattatgttcccaggaggaaagtgtt
caagatattactgtagctagtaaagaaacggaggatatggatactgctgaaagccttcag
cagaatgaatccttggctgttgtgaaatgtaagtacaaagactgtatggaaaaagtggaa
aaaccaggagagtactgtagcaagcattcagccaccagctcagaagcagatgacttgttt
gctaaaccttctctcctgccaccttctaaaacaagaaaaccttccactaccaaaatcttc
agctcagcaagttcttcacggaatgcagccttcagcaaggatcttgaagatggtaaaaag
ctactaccaccttcaaaaagcaaagtgaatgcagcaaaaccagtggtggtcaggctacca
catgcaaaggctgtaccaataggacatcaaacatgcaagacttcaagttacagtaatata
cctcaaccccatttttctaataacgttctccagtcacaaaacagaaaccacgacaatgct
tcaaatatttccagaagacctgcccgagaagcacatcgttcttcctttcttggtgctcag
cagcatgatcatagtatttttgttaaggaagtcctaaagtggacttatgaaatgtttgca
aactccaaccagtttggacctccaaataatctcctgcagtctatagtagctcctgttcct
gtccaatttcagggatacaatgactattttaatacatttttccccttgctgatgctaaat
gcttttgaaaccctggcacaagagtgggtagaaaaccagagagtaagagagaagagttac
tacttctacttacagaacttctgtgctgacttgaatacagcagattttacagctcatttt
caagaaagtgatttggcaaggcagcttcacccaaaggaggatgacttaatctttttggtg
gtccaaaagaaaaaagacacctttagggaagaaagtgagatggagaaccatacagtgaat
cacgttggtcttgtgacacgattttctcatgcatctggctatttaactagacagaaggag
cagcgtactgtgtgtcatctttctgtgcaaactcgaggcaacttgtcattcttcataaat
aagcaagtgaagtgtgtggtggttggctccctggtgaccacacaccgaacgttcaaaggt
cttctactattgagcaggagtcccctgttgaaacccatcttaagtccaagttacaatgac
ttctgtcccagagatttgcctgtagcttcagaaagtgctgcattggatatgaacgaatac
aatgaagatcaaaagagagccattgagacagcttatgccatggtaaagcaacatccaggc
cttcccaagatctgcctcatccacggaccacctggaacagggaaatcaaaaactatagtt
ggacttctgtctcgtgttttgagagaaaacactaggaatgagaaagcaactccaagaaca
aattccaagatcaaaccaaaccgttttctagtttgtgcaccatcaaatgctgctgttgat
gaactcatgaagaagatcatcgttgcatttaaggaaaaatgccaaaacaaacaagagcct
ttgggaaattgtggtgatatcaaattagtacgactcggtgctgaaaaagcgatcaacagt
gaagtccggggatttagcctggataagcaagttgaacatagaatgaaacgaaagccagct
gactgtgaccaggatattcagaagaaaaaagcagctctggatcgacagctggacatgctg
tctcgtcagcgtgccatgcacagatgtgagaagaaggagagtcaaatgttagatgatgaa
attggcagactttcaaaggagagacaacagcttgcttctcaactaaaggaggttcgggga
cactctcagaaagtacaggcgaatatcatcttggagtcagacatcatctgctgcacactg
agcacaagtggagggagtctgctggaatctgtgttttggcggcaaggacttcatcctttc
agctgtgtcattgtggatgaggcagggcagtcctgtgaggttgaaacactgattccattg
atccatcgctgcaataaacttatccttgttggagatcccagacagctccctcctactgta
aaatcaataaaagctcaggaatatggctatgatcagtccttgatggcacgcctgcacaga
aacctggaagagcaagtgcagaggaatgttttacgaagcctgccagttgtgcagctgaca
gtgcagtacaggatgcaccctgacatctgcctcttcccatccaactatgtttatggcagg
actctaaagaccgacaaagtaacggaagagaacagatgttcttcagagtggccattccag
ccctaccttatttttgatgtaggagatggtcgtgaggagcgagaaaatgactctttcagt
aatcctcaggaagtgaagctggtgatggaattaattagaacaattaaagaaaaaaggaag
gatatgggtcttcgtcgcattggaataattaccccttacagcgcacagaaaaggaaaatt
caagtacagctggacagagtgtttaagaataacagcccaggagaagtggacacagtggat
gcattccagggacgagagaaagactgcatcatagtgacgtgcgtccgggcgaacagcact
aaagggtcaattgggtttctagcaagtcttcagcgtctgaacgtgacaattacccgagcc
agattcagcctctttatccttggaagactgaaaacactcatggaaaataaagactggaat
gagttgattcaggatgctcagaaaagaggtgccattatcaaaacatcagaaaaaagctac
aggaaagatgctgttaagattttgaagctcaagccaacaatgcagcccctacccaaaaca
gggacaaagaaacctcctctgcaggcttgttcttccagcatccagaggggtgagcttgca
aatccaagggaggccagcagcctgcgggaactcgctgccggtgctggccaggcagtgcca
caaggaagccgagggccccagcagccacagggagctcagggtgcagactccaggagaggc
agtgcctctgcacctgtggaggctgcagtgcttcctgatcaagagaaaccacgggaccca
aggctggcaagtcttgctagtagaactgaaacaaaagggaaggagccaacctcaaaagtc
agcagtcgatcagcccagagcaatccaggatcaatgtcacagcaaagcctccatgtgtcc
ccagctgccagggatcagatttccagaactggaacttcaaagaaaccccagcaaacggtg
gggcaatgcgacgtgccttctgcgtcgcctcatgcagctcggcatgagggtgactggaga
gcttctgtattgaaaagcagttcaaaagcccacagcgaaggaggtcaaagtaatagcagt
aagtggaacaaagactctcgtgttttaacgaggagaacatcagaggaatcaccacagaac
acagactcaaacagtgctaagcgaagaaagacctctcactga
DBGET
integrated database retrieval system
