Antrostomus carolinensis (chuck-will's-widow): 104523472
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Entry
104523472 CDS
T08541
Symbol
MSH2
Name
(RefSeq) DNA mismatch repair protein Msh2
KO
K08735
DNA mismatch repair protein MSH2
Organism
acar
Antrostomus carolinensis (chuck-will's-widow)
Pathway
acar03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
acar00001
]
09120 Genetic Information Processing
09124 Replication and repair
03430 Mismatch repair
104523472 (MSH2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
acar03400
]
104523472 (MSH2)
DNA repair and recombination proteins [BR:
acar03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
Mismatch and loop recognition factors
104523472 (MSH2)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
MutS_V
MutS_IV
MutS_III
AAA_27
DHC_N1
Motif
Other DBs
NCBI-GeneID:
104523472
NCBI-ProteinID:
XP_010164364
LinkDB
All DBs
Position
Unknown
AA seq
533 aa
AA seq
DB search
MKKIWSLQNVFGHQSLLALLRKVCEESQALETSGKVWSKEGTASLEEDQVSKHLNKLDTH
ICGTQGVHPEVLRLNLVESFVVDPELRQCLQEDLLRRFPDLNRLAKKFQRQAANLQDCYR
MYQAINQLPNVVQALEKHEGAHQMLLLAVFITPLNDIYSDFSKFLEMIETTLDMDKVENH
EFLVKASFDPNLTELREKMNELEEKMQSFLKSAAKELGLEAGKSIKLETNSQFGHHFRIT
CKEEKVLRNNSKYGIVDTQKNGVKFTNSKLSSVNDEYIKNREEYEEAQDAIVKEIINIAS
GYAEPIQTMNDVIAQLDAIVSLAHVSNGAPVPYVRPVILEKGQGRIVLRGARHPCIEVQD
EVAFIPNDVTFEKGKQMFHIITGPNMGGKSTYIRQTGVIVLMAQIGCFVPCDSAEITIVD
CILARVGAGDSQLKGVSTFMAEMLETASILRTASENSLIIIDELGRGTSTYDGFGLAWAI
SEYIASKICAFCMFATHFHELTALADQVPTVNNLHVTALTSDDTLTMLYRVKE
NT seq
1600 nt
NT seq
+upstream
nt +downstream
nt
atgaaaaaaatctggtctttacaaaatgtgtttggtcaccagtcgctgctggcacttctg
agaaaagtttgtgaagaatcccaagcgcttgaaacaagtggcaaagtctggagtaaagaa
ggcacagcctcgttagaggaggatcaggttagcaaacatttaaacaaattggacacacac
atctgtgggacccaaggagtacacccagaagtgctgaggttgaatttggttgaatctttt
gtggtggatccagagctacgtcagtgccttcaagaagatctcttacgtcgcttcccagat
cttaaccggctggcaaagaaatttcagagacaagcagcaaacttacaggactgttaccga
atgtatcaggctattaatcaactgcctaatgttgtacaagcactagaaaaacacgaagga
gctcaccagatgttgttgttggcagtatttataacacctcttaatgatatctactctgac
ttctcaaagtttctggagatgatagaaacaacattggacatggataaggtggagaatcat
gaatttcttgtcaaggcttcttttgatcctaatttaacagaattaagagagaagatgaat
gaactggaagaaaaaatgcagtcctttttaaagagtgcagccaaagaactaggtttggaa
gctggcaaaagtatcaaactggaaacaaattcacagtttggacatcactttcgaataact
tgcaaggaggaaaaagtgctccgtaacaattcaaaatatggaatagttgatacacagaag
aacggtgtgaagtttactaacagcaaactgagctccgtcaatgatgaatatataaagaac
agagaagagtatgaagaggctcaggatgcaattgttaaggaaatcattaacattgcttca
ggttatgcagaaccaatacagacgatgaatgatgtgatagctcaattagatgcaattgtc
agtttggctcatgtgtcaaatggagcaccagtgccgtatgtacgtcctgtcattctggag
aagggacagggaaggattgtgctgagaggcgccaggcatccttgcatcgaagtgcaagat
gaggtggccttcatccccaatgacgttacgtttgagaagggcaagcagatgttccacatt
attactggcccgaacatgggaggaaaatcaacatacatccgacagacaggtgtaattgtt
cttatggcccaaatagggtgttttgtgccgtgtgactccgcagaaatcaccattgtggat
tgtatcctggctcgcgtgggagctggagacagtcagctgaaaggcgtgtctactttcatg
gctgaaatgttagaaactgcttcaatccttaggacagcatctgaaaactccctgataatc
attgatgagctgggaagaggaacgtctacctacgatggctttggcttagcatgggctatt
tcagaatacattgctagcaaaatctgtgctttctgtatgtttgctacacattttcatgaa
ctgacagctcttgctgaccaagtgccaacagtaaataacctacatgtcacggctctgact
agtgatgacacactgacgatgctttatcgcgtcaaggaag
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