Antrostomus carolinensis (chuck-will's-widow): 104523514
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Entry
104523514 CDS
T08541
Symbol
DHX38
Name
(RefSeq) pre-mRNA-splicing factor ATP-dependent RNA helicase PRP16
KO
K12815
pre-mRNA-splicing factor ATP-dependent RNA helicase DHX38/PRP16 [EC:
5.6.2.6
]
Organism
acar
Antrostomus carolinensis (chuck-will's-widow)
Pathway
acar03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
acar00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
104523514 (DHX38)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
acar03041
]
104523514 (DHX38)
Enzymes [BR:
acar01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
104523514 (DHX38)
Spliceosome [BR:
acar03041
]
Complex C
Other components
Step II factors
104523514 (DHX38)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
OB_NTP_bind
Helicase_C
HA2_C
DEAD
HA2_N
AAA_22
AAA_19
nSTAND3
Flavi_DEAD
T2SSE
PhoH
Microtub_bd
SRP54
AAA_30
DUF6449
AAA_16
AAA_7
Sigma54_activ_2
MRP-S31
Motif
Other DBs
NCBI-GeneID:
104523514
NCBI-ProteinID:
XP_028940354
LinkDB
All DBs
Position
Unknown
AA seq
845 aa
AA seq
DB search
MLTSGVVHRIEVDEDFEEDNSAKVHLLVHNLVPPFLDGRIVFTKQPEPVIPVKDATSDLA
IIARKGSQLVRKHREQKERKRAQHKHWELAGTKLGDIMGIKKEEEKDEMVTEDGKVDYKT
EQKFAEHMKEKSEASSEFAKKKSILEQRQYLPIFAVQQELLSILRDNSIVIVVGETGSGK
TTQLTQYLHEDGYTDYGMIGCTQPRRVAAMSVAKRVSEEMGVRLGEEVGYAIRFEDCTSE
NTVIKYMTDGILLRESLREADLDNYSAIIMDEAHERSLNTDVLFGLLREVVARRSDLKLV
VTSATMDADKFASFFGNVPIFHIPGRTFPVDILFSKTPQEDYVEAAVKQALQVHLSGAPG
DILVFMPGQEDIEVTSEQIVEHLEELEKAPALAVLPIYSQLPSDLQAKIFQKAPDGVRKC
IVATNIAETSLTVDGIMFVIDSGYCKLKVFNPRIGMDALQIYPISQANANQRAGRAGRTG
PGHCFRLYTQSAYKNELLTTTVPEIQRTNLANVVLLLKSLGVQDLLQFHFMDPPPEDNML
NSMYQLWILGALDNTGGLTSTGRLMVEFPLDPALSKMLIVSCDMGCSSEILLIVSMLSVP
AIFYRPKGREEESDQVREKFAVPESDHLTYLNVYLQWKNNNYSTLWCNQHFIHAKAMRKV
REVRAQLKDIMVQQRMSLASCGTDWDVVRKCICAAYFHQAAKLKVSGYVNIRTGMPCHLH
PTSSLFGMGYTPDYIVYHELVMTTKEYMQCVTAVDGEWLAELGPMFYSIKHAGKSRQENR
RRAKEEVSAMEEEMALAEEQLRARREEQERRNPLGSARSTKIYTPGRKEQGEPLTPRRTP
ARFGL
NT seq
2538 nt
NT seq
+upstream
nt +downstream
nt
atgctgaccagtggtgtggttcatcggattgaagtggacgaagattttgaggaggataac
tctgctaaagtgcatctgttggtgcacaacctggtgccccctttcctggatggaaggatt
gtcttcaccaagcagccagaaccagtcatccctgtgaaggatgccacctcagatttggcc
atcatagcccggaaaggcagccaattggtgcgcaagcacagggagcaaaaggagcgtaag
agggctcagcataaacactgggagctggcaggcacaaaactgggagacattatggggatc
aagaaagaggaggagaaggatgagatggtgacagaagatggcaaagtggattacaaaact
gagcagaagtttgctgaacacatgaaagaaaaaagtgaagccagcagtgagtttgccaag
aagaaatcgatcctggagcagagacaatatctgcccatctttgctgtgcagcaggagctg
ctctccatcctcagagacaacagcattgtgattgtggtgggggagacggggagtgggaag
acgactcagttgacacagtacctccatgaggatggctacacagactatggcatgattggc
tgcacccagccccgccgagtggcggccatgtcggttgccaagcgggtcagcgaagagatg
ggggtgcgtctgggagaggaggtgggctatgccatccgctttgaggactgcacgtccgag
aacacagtgatcaaatacatgacagatgggattcttcttcgtgagtcactgcgagaggct
gacctggacaactacagtgctatcatcatggatgaggcacatgagcgctcactcaatact
gatgtgctctttggcctgcttcgggaggtggtggcccgacgctcagatctgaagcttgtt
gtcacttcggccaccatggatgcagataagtttgcctccttctttgggaacgttcctatt
ttccacattcctgggcgcactttccctgttgatattcttttcagcaagaccccacaagag
gattatgtggaggctgcagtgaaacaagccctgcaggtccatttgtccggtgctcccgga
gacatccttgtcttcatgcctggccaggaagacatagaggtgacctcggagcaaattgtg
gagcaccttgaggagctggagaaggcgcctgctcttgctgtgctgcctatctattctcag
ctaccatcagacttgcaggccaagatcttccagaaggctccagatggggtcaggaaatgc
attgttgccaccaacattgcggagacttcgctgacagtggatggcatcatgtttgtgatt
gactctggctactgcaagttgaaggttttcaacccccgtataggcatggatgcactgcag
atctaccccatcagtcaagccaatgccaatcagagggcaggccgagctggccgaacaggc
ccaggccactgcttcaggctctacacccagagcgcctacaagaatgagctgctgacaacc
acggtgcccgagatccagcgcaccaatcttgccaatgtagtgcttttgctcaagtccctg
ggtgtgcaggacctgctgcagttccacttcatggatccaccccctgaggacaacatgctg
aactccatgtaccagctgtggattctgggggccctggataacacaggtggtctgacctca
acaggacgtctcatggtggagttcccactggatcctgcactctccaaaatgctgattgtc
tcctgtgacatgggttgcagctctgagatcttgctcattgtctccatgttgtctgtgcct
gccatcttttatcggcctaagggccgagaggaggagagtgaccaagtgcgggagaaattt
gctgttccagagagtgatcacttaacttacctgaacgtttatctgcagtggaagaacaac
aactattctacattgtggtgcaaccagcacttcatccatgccaaagccatgcggaaggtg
cgggaggtgcgtgcccagctcaaggacatcatggtgcagcagcggatgagcctagcatcc
tgtggtactgactgggatgttgtcaggaagtgcatctgtgctgcctatttccatcaagct
gcaaagctaaaggtgagtggttatgtgaacatccgcacaggcatgccctgccacctgcac
cccacgagctctctgtttggcatgggctacacaccagactacattgtgtatcatgagttg
gtcatgaccaccaaggaatacatgcagtgtgtcactgctgtggatggagagtggctggca
gagctgggccccatgttctacagtatcaaacatgctggcaagtcacgccaggagaaccgc
cgccgtgctaaggaggaagtgtctgccatggaggaggagatggctttggctgaggagcag
ctgcgtgcccgtcgggaggagcaggagcgccgtaacccactgggcagcgcaagatctact
aaaatctacacccctgggcggaaggagcagggggagcccctgacaccacgacgcacccca
gcccgctttggcctctag
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