Antrostomus carolinensis (chuck-will's-widow): 104524542
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Entry
104524542 CDS
T08541
Symbol
CPSF2
Name
(RefSeq) cleavage and polyadenylation specificity factor subunit 2 isoform X1
KO
K14402
cleavage and polyadenylation specificity factor subunit 2
Organism
acar
Antrostomus carolinensis (chuck-will's-widow)
Pathway
acar03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
acar00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
104524542 (CPSF2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
acar03019
]
104524542 (CPSF2)
Messenger RNA biogenesis [BR:
acar03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage and polyadenylation specificity factor (CPSF) complex
104524542 (CPSF2)
U7-dependent histone pre-mRNA processing factors
104524542 (CPSF2)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Lactamase_B_6
CPSF100_C
Beta-Casp
RMMBL
Lactamase_B
Lactamase_B_2
Beta_lactamase3
Motif
Other DBs
NCBI-GeneID:
104524542
NCBI-ProteinID:
XP_010165764
UniProt:
A0A094KEE6
LinkDB
All DBs
Position
Unknown
AA seq
782 aa
AA seq
DB search
MTSIIKLTTLSGVQEESALCYLLQVDEFRFLLDCGWDENFSMDIIDSLRKHVHQVDAVLL
SHPDPLHLGALPYAVGKMGLNCAIYATIPVYKMGQMFMYDLYQSRHNTEDFTLFTLDDVD
AAFDKIQQLKFSQIVNLKGKGHGLSITPLPAGHMIGGTIWKIVKDGEEEIVYAVDFNHKR
EIHLNGCSLEMLSRPSLLITDSFNATYVQPRRKQRDEQLLTNVLETLRGDGNVLIAVDTA
GRVLELAQLLDQIWRTKDAGLGVYSLALLNNVSYNVVEFSKSQVEWMSDKLMRCFEDKRN
NPFQFRHLSLCHSLSDLARVPSPKVVLASQPDLECGFSRDLFIQWCQDSKNSVILTYRTT
PGTLARFLIDNPSEKVIDIELRKRVKLEGKELEEYLEKEKLKKEAAKKLEQSKEADIDSS
DESDAEEDIDQPTVHKTKHDLMMKGEGSRKGSFFKQAKKSYPMFPAPEERIKWDEYGEII
KPEDFLVPELQATEEEKSKLESGLTNGEEPVDQDLSDVPTKCISATESMEIKARVTYIDY
EGRSDGDSIKKIINQMKPRQLIIVHGPPEASQDLAECCRAFGGKDIKVYMPKLHETVDAT
SETHIYQVRLKDSLVSSLQFCKAKDAELAWIDGVLDMRVSKVDTGVILEEGELREDEDVE
MQVDVPSSDSSVIAQQKAMKSLFGDDDKEMCEESEIIPTLEPLPPHEVLGHQSVFMNEPR
LSDFKQVLLREGIQAEFVGGVLVCNNLVAVRRTETGRIGLEGCLCQDFYRIRDLLYEQYA
IV
NT seq
2349 nt
NT seq
+upstream
nt +downstream
nt
atgacatcgattatcaagctgactacgctttcaggggtgcaggaggaatctgccctttgc
tatctgttgcaagtagatgaatttcgttttcttttggactgtggctgggatgagaacttt
tctatggatattattgattctctgaggaaacacgtacaccaggttgatgctgttcttctt
tctcatcctgaccctctacaccttggtgctctgccatatgcagttggaaaaatggggttg
aattgtgccatttatgcaactattcctgtatataaaatgggacagatgtttatgtatgat
ctctaccagtcccgccataatacggaagatttcacactgtttacgttggatgatgtagat
gcagcctttgataagatacaacagctgaagttttctcagattgtgaacttgaaaggcaaa
ggacatggtttgtcaatcacacctttgccagctggccacatgataggaggcacgatttgg
aagattgtcaaggatggagaggaagaaattgtttatgcagttgatttcaaccacaagagg
gagatccatctgaatggatgttccttggaaatgctgagcaggccttcattgcttattaca
gattcatttaatgctacttatgtacaacccaggaggaagcagagggatgaacagctactg
actaatgttttggagactttacgaggtgatggaaacgtattaatagctgtggatacagca
ggcagagttctggaacttgctcagcttcttgatcagatctggagaacgaaagatgcagga
ttaggagtctactctctagcacttctgaataatgtcagctacaacgtcgtggagttctct
aaatcacaggttgaatggatgagtgacaagttgatgaggtgttttgaagacaagagaaac
aatccttttcagttccgccatctctccttatgtcatagtctgtctgatctggctcgggtg
cctagtccaaaagttgttcttgctagtcaacctgacttggagtgtgggttttctagagat
cttttcattcagtggtgccaggattccaaaaactctgtaattttaacttaccgcactaca
cctggaacgttggcacgattcctcatagataatccttctgaaaaagttatagatattgag
ttgagaaaacgtgtcaagttggaaggaaaagaacttgaagaatacctagaaaaggagaaa
ctaaagaaagaagcagctaagaagttagagcagtctaaagaggcagatatcgattccagt
gatgagagtgatgctgaagaggatattgatcagccaactgtacataagaccaaacatgat
ttgatgatgaaaggtgaaggtagccggaaaggaagcttcttcaaacaggcaaagaaatct
tatccaatgtttccagctcctgaagaaagaattaaatgggatgaatacggcgagattatc
aaacctgaggatttcctagttccagaacttcaggcaacagaagaagagaaaagcaaatta
gagtctggtttgacaaatggagaagagcctgtggaccaggatttatcagatgttcctacc
aaatgtatttctgcaacagaatccatggaaataaaagccagagttacatacattgactat
gaaggacgctcagatggggactcaattaaaaaaattattaaccaaatgaaaccaagacaa
ctgatcattgtccatgggccacctgaggccagtcaggaccttgcagaatgttgcagagct
tttggaggaaaagatattaaagtttacatgccaaaactgcatgaaactgtagatgcaacc
agcgaaactcacatttaccaggtcaggttaaaagattctcttgtcagctcccttcagttc
tgtaaagccaaggatgctgagttggcttggatagatggtgttctggacatgcgggtttcg
aaagtggatactggagttattttggaagagggagagctgagggaagatgaagacgtagag
atgcaagtggatgtgccttcttcagactccagtgtcattgcacaacagaaggccatgaag
agcctcttcggtgacgatgacaaggagatgtgtgaggagagtgagatcattcctactttg
gaacctctgccacctcatgaggtccttggacatcagtctgtgtttatgaacgagccacga
ctgtctgacttcaagcaggttctcttgcgagaaggtatacaagctgagtttgtaggagga
gtacttgtgtgcaacaatctggtggctgttcgcaggaccgaaacagggcgcattggattg
gaaggctgtctctgtcaggacttctataggataagagacctgttatatgagcaatacgct
attgtctga
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