Antrostomus carolinensis (chuck-will's-widow): 104524993
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Entry
104524993 CDS
T08541
Symbol
VPS39
Name
(RefSeq) vam6/Vps39-like protein
KO
K20183
Vam6/Vps39-like protein vacuolar protein sorting-associated protein 39
Organism
acar
Antrostomus carolinensis (chuck-will's-widow)
Pathway
acar04140
Autophagy - animal
acar04142
Lysosome biogenesis
acar04145
Phagocytosis
acar04148
Efferocytosis
acar05132
Salmonella infection
Brite
KEGG Orthology (KO) [BR:
acar00001
]
09140 Cellular Processes
09141 Transport and catabolism
04145 Phagocytosis
104524993 (VPS39)
04142 Lysosome biogenesis
104524993 (VPS39)
04140 Autophagy - animal
104524993 (VPS39)
04148 Efferocytosis
104524993 (VPS39)
09160 Human Diseases
09171 Infectious disease: bacterial
05132 Salmonella infection
104524993 (VPS39)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
acar04131
]
104524993 (VPS39)
Membrane trafficking [BR:
acar04131
]
Endosome - Lysosome transport
Tethering complex
Hops complex
104524993 (VPS39)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Vps39_1
CNH
zf-Vps39_C
TPR_Vps41
Clathrin
VPS18_solenoid_2nd
LIF1_N
DUF4145
SAM_CEP-1_C
EcoR124_C
Motif
Other DBs
NCBI-GeneID:
104524993
NCBI-ProteinID:
XP_010166333
LinkDB
All DBs
Position
Unknown
AA seq
835 aa
AA seq
DB search
MSSESVCCNRFEVTLEKSNKNFSKKIQQIHVVSQFKILVSLLENNIYVHDLLTFQQITTV
SKAKGASLFTCDLQQSDTGEEVLRMCVAVRKKLQLYFWKDREFHELQGDFSVPDVPKSMA
WCENSICVGFKRDYYLIRVDGKGSIKELFPTGKQLEPLVAPVADGKVAVGQDDLTVVLNE
EGICTQKCALNWTDIPIAMEHQPPYIIAVLPRYVEIRTFEPRLLVQSIELQRPRFITSGG
TNIIYVASNHFVWRLIPVSIATQIQQLLQDKQFELALQLAEMKDDSDSEKRQQIHHIKNL
FAFNLFCQKRFDESMQVFAKLGTDPTHVMGLYPDLLPTDYRKQLQYPNPLPGLSGAELEK
AHLALIDYLTQKRSQLVKKLNDSDHQSSTSPLMEGTPTIKSKKKLLQIIDTTLLKCYLHT
NVALVAPLLRLENNHCHIEESEHVLKKAHKYSELIILYEKKGLHEKALQVLVDQSKKANS
PLKGHERTVQYLQHLGTENLHLVFSYSVWVLRDFPEDGLKIFTEDLPEVEALPRDKVLSF
LIENFKSLTIPYLEHIIHVWEETGADFHNCLIQLYCEKVQGLMKEYLNSFPADKTPVPAG
EEGGDLGDYRKKLLLFLEKSSWYEPSRLISDFPFDGLLEERALLLGRMGKHEQALFIYVH
ILKDTNMAENYCHKHYDRNKDGNKDVYLSLLRMYLSPPSVHCLGPIKMEVLEPQANLQAA
LQVLELHHSKLDTTKAINLLPANTQISEIRIFLEKVLEENAQKKRFNQVLKNLLHAEFLR
VQEERILHQQVKCIITEEKVCTVCKKKIGNSAFARYPNAIVVHYFCSKEVNALDT
NT seq
2508 nt
NT seq
+upstream
nt +downstream
nt
atgtcatcagaaagtgtctgttgcaatagatttgaagtgacactagagaaatccaacaag
aacttctccaaaaagattcagcagattcacgttgtttctcagtttaaaattctggtcagt
ctattagaaaataacatctatgtccatgacctgttgacatttcaacaaatcaccacggtt
tccaaggcaaaaggtgcatctctcttcacttgtgatcttcagcagtcagatacaggggaa
gaagtgctgagaatgtgcgtggcagtgcggaagaaactacaactgtatttttggaaggac
agggagtttcatgaactgcagggagacttcagtgtacctgatgtaccaaagtctatggcc
tggtgtgaaaactccatctgtgtaggcttcaagagggactattacctgatacgggtggat
ggaaaaggatccatcaaagaactgtttcccacagggaagcagctggaaccattggtggct
cctgtagcagatggaaaagttgcagttggccaagatgatctaacagttgtgctcaatgaa
gaagggatctgtactcagaaatgtgccttgaattggacagatattcctatagccatggaa
caccagcctccctacatcattgctgttctgccaaggtacgtggagatccgcacttttgaa
ccccggctgctagtacagagtatcgagctgcagagaccacgcttcatcacctctggaggc
acgaatattatatatgtggcaagtaatcactttgtttggcggctcattccagtgtccata
gccacacagatccagcagcttctgcaggacaagcagtttgagttggctttgcagttggcc
gaaatgaaagatgattcagatagtgagaagcgacaacaaatccaccacataaagaacctc
tttgccttcaacctcttctgccagaagcgctttgatgaatccatgcaagtttttgccaag
cttggtacagatcccactcatgtgatgggtttgtatcctgacctcctgcccacagattac
aggaaacagctacagtatcccaacccactgccagggctctctggggcagagctggagaag
gcacatttagctctgatagactacctaactcaaaaacgaagtcagctggtgaagaagcta
aatgattctgaccatcagtccagtacctcacctctcatggaaggaacaccaacgatcaaa
tcaaaaaagaagctgctacaaatcattgataccaccctgttaaagtgttacctccataca
aatgtagcactggtggcaccattgctacgtctggagaacaatcactgccatattgaggag
agtgagcatgtactaaagaaggcacacaagtatagtgagctgataatactgtatgagaag
aaaggtctccatgagaaagcattacaggtactggtggatcagtcaaagaaagccaactca
cctttgaagggtcatgaaaggacagtgcaatatctgcagcatttgggaacggaaaacttg
cacttggtattttcctactctgtctgggtgctgagagattttcctgaagatggactgaag
atatttacagaagacctccctgaagtggaagctttgccacgagacaaagtgctcagtttc
ttgatagaaaattttaaaagcttgactattccttatctggaacacatcattcatgtctgg
gaagaaactggtgcagactttcacaactgtctgatccagctgtactgtgagaaagtgcag
ggcttaatgaaagagtatctcaattctttccctgcagataaaactccagtgcctgctggg
gaggaaggaggagacttgggggattaccggaaaaaacttctgctttttctggagaagtct
agctggtatgaacctagtcgactaattagtgacttcccctttgatggtctcctagaagaa
cgtgctctgctcttgggtcgtatggggaagcatgagcaagctctgtttatttatgttcat
attttgaaggacaccaacatggctgaaaactactgccataaacattatgacagaaacaaa
gatgggaacaaagatgtctatctgtcattgctccggatgtatctctccccacctagtgtt
cattgcctgggaccaatcaagatggaagtgctggagcctcaagccaatctgcaggctgct
ctgcaggttttggaactacatcacagcaaactggataccaccaaggcgataaacctgctc
ccagcaaatacacagattagtgagattcgaatctttttggagaaagtccttgaagaaaat
gctcagaagaaaagatttaatcaagtactcaagaatcttctccatgcagagtttctgagg
gtccaggaggagcgaatcttgcatcagcaagtgaagtgcattattacagaggagaaggtg
tgcactgtgtgtaagaagaagataggtaacagtgcatttgctcgataccctaatgcaata
gtcgtgcattatttctgctccaaagaagtcaacgcattggacacctga
DBGET
integrated database retrieval system
