Antrostomus carolinensis (chuck-will's-widow): 104525414
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Entry
104525414 CDS
T08541
Name
(RefSeq) ATP-dependent RNA helicase DDX3X isoform X2
KO
K11594
ATP-dependent RNA helicase DDX3X [EC:
5.6.2.7
]
Organism
acar
Antrostomus carolinensis (chuck-will's-widow)
Pathway
acar04622
RIG-I-like receptor signaling pathway
Brite
KEGG Orthology (KO) [BR:
acar00001
]
09150 Organismal Systems
09151 Immune system
04622 RIG-I-like receptor signaling pathway
104525414
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
acar03019
]
104525414
03041 Spliceosome [BR:
acar03041
]
104525414
03036 Chromosome and associated proteins [BR:
acar03036
]
104525414
Enzymes [BR:
acar01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
104525414
Messenger RNA biogenesis [BR:
acar03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
104525414
mRNA cycle factors
Common to processing body (P body) and stress granule
104525414
Spliceosome [BR:
acar03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
RNA helicase-like proteins
104525414
Chromosome and associated proteins [BR:
acar03036
]
Eukaryotic type
Gene silencing
RISC (RNA-induced silencing complex)
104525414
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Utp25_C
Cas3-like_C_2
Motif
Other DBs
NCBI-GeneID:
104525414
NCBI-ProteinID:
XP_010166869
LinkDB
All DBs
Position
Unknown
AA seq
473 aa
AA seq
DB search
MGEIIMGNIELTRYTRPTPVQKHAIPIIKEKRDLMACAQTGSGKTAAFLLPILSQIYADG
PGDALRAMKENGRYGRRKQYPISLVLAPTRELAVQIYEEARKFAYRSRVRPCVVYGGADI
GQQIRDLERGCHLLVATPGRLVDMMERGKIGLDFCKYLVLDEADRMLDMGFEPQIRRIVE
QDTMPPKGVRHTMMFSATFPKEIQMLARDFLDEYIFLAVGRVGSTSENITQKVVWVEESD
KRSFLLDLLNATGKDSLTLVFVETKKGADALEDFLYHEGYACTSIHGDRSQRDREEALHQ
FRSGKSPILVATAVAARGLDISNVKHVINFDLPSDIEEYVHRIGRTGRVGNLGLATSFFN
ERNINITKDLLDLLVEAKQEVPSWLENMAYEQHHKGGGSRGRSKSRFSGGFGARDYRTSS
GSGSSSFSSSRSTSSRSGGSGSRGFGGGGYGGFYNSDGYGGNYNSQGVDWWGN
NT seq
1422 nt
NT seq
+upstream
nt +downstream
nt
atgggagaaattattatgggaaacattgagctcacacgctacactcgtcctaccccagtc
cagaaacatgcaatacctattattaaagaaaagagagacctgatggcctgtgctcagaca
gggtctgggaaaacagctgcgtttcttctaccaatattgagccagatctatgcagatggc
cctggtgatgccttgagagctatgaaggagaatggaaggtacggacgccgtaagcaatac
ccaatctcactggtcttggctcccactagagaactggctgtgcagatctatgaggaagcc
agaaagtttgcataccgttccagagttcgtccctgtgttgtatacggtggtgcagacatt
ggtcagcagatacgtgacttggaacgtggatgtcacttgcttgtagcaactccaggacga
ctggttgatatgatggagaggggaaagattggattggatttctgcaagtacctggtgctt
gatgaagctgacagaatgcttgatatggggtttgaacctcaaattcgtcgaattgttgaa
caagatactatgccaccaaagggggttcgtcataccatgatgttcagtgctactttcccc
aaggaaatccagatgcttgctcgtgacttccttgatgaatatatctttctggctgttggc
agagtaggttctacatctgagaatatcacacagaaagtagtatgggtggaagagtcagac
aaacgatcatttctgcttgacctgctaaatgccacaggcaaggattccttgactctggtg
tttgtggaaactaaaaagggtgcagatgccctcgaggacttcttgtaccatgaaggatat
gcctgtacgagtatacatggagatcgctctcagagagacagagaggaagcactgcaccag
ttccgttcgggcaagagcccaattcttgttgccacagctgtagcagcaagaggactggat
atctcaaatgtaaagcacgtcataaacttcgacttgccaagtgacattgaagagtatgta
catcggattggtcgtacaggccgagtaggaaaccttggtcttgccacctcattcttcaat
gagaggaacataaacatcaccaaggacttgcttgatcttctcgttgaggctaagcaagaa
gtaccatcttggctggaaaatatggcttatgaacagcatcacaaaggaggtggcagccgt
gggcgatctaagagtaggttcagtggaggatttggtgccagagactatcgaacaagcagc
ggttctggcagcagtagctttagtagcagtcgatcaaccagcagccgcagtggaggaagt
ggcagcagaggatttggaggtggtggttatggaggcttctacaacagtgatggatatgga
ggaaactataactcccagggggttgactggtggggcaactga
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