Antrostomus carolinensis (chuck-will's-widow): 104525962
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Entry
104525962 CDS
T08541
Symbol
CNOT4
Name
(RefSeq) CCR4-NOT transcription complex subunit 4 isoform X1
KO
K10643
CCR4-NOT transcription complex subunit 4 [EC:
2.3.2.27
]
Organism
acar
Antrostomus carolinensis (chuck-will's-widow)
Pathway
acar03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
acar00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
104525962 (CNOT4)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
acar03000
]
104525962 (CNOT4)
03019 Messenger RNA biogenesis [BR:
acar03019
]
104525962 (CNOT4)
04121 Ubiquitin system [BR:
acar04121
]
104525962 (CNOT4)
Enzymes [BR:
acar01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
104525962 (CNOT4)
Transcription factors [BR:
acar03000
]
Eukaryotic type
Zinc finger
Cys3His zinc factors
104525962 (CNOT4)
Messenger RNA biogenesis [BR:
acar03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
104525962 (CNOT4)
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
104525962 (CNOT4)
Ubiquitin system [BR:
acar04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Other single Ring-finger type E3
104525962 (CNOT4)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
zf-RING_4
RRM_1
zf-C3HC4_3
zf-UDP
zf-C3HC4_2
zf-RING_2
Rtf2
Nup35_RRM_2
DZR_2
zf-CCCH_2
Torus
zf-C3HC4
Motif
Other DBs
NCBI-GeneID:
104525962
NCBI-ProteinID:
XP_010167570
LinkDB
All DBs
Position
Unknown
AA seq
713 aa
AA seq
DB search
MSRSPDAKEDPVECPLCMEPLEIDDINFFPCTCGYQICRFCWHRIRTDENGLCPACRKPY
PEDPAVYKPLSQEELQRIKNEKKQKQNERKQKISENRKHLASVRVVQKNLVFVVGLSQRL
ADPEVLKRPEYFGKFGKIHKVVINNSTSYAGSQGPSASAYVTYIRSEDALRAIQCVNNVV
VDGRTLKASLGTTKYCSYFLKNMQCPKPDCMYLHELGDEAASFTKEEMQAGKHQEYEQKL
LQELYKLNPNFLQLSTGTVDKNKNKVTALQRYDVPIDKPSDSLSIGNGDSSQQITNSDTP
SPPPGLTKPNPVIPISSSNHSARSPFEGAVTESQSLFSDNFRHPNPIPSGLPPFPSSPQT
SNDWPTAPEPQSLFTSETIPVSSSTDWQAAFGFGSSKQQEDDLGFDPFDITRKALADLIE
KELSVQDQPSLSPTSLQNPTPHTTAAKGPGSGFLHPAAPTNANSLSSTFPVMPQRFPQFQ
QHRAVYNSFSFPGQAARYPWMAFPRNSIMHLNHTANPTSNSNFLDLNLPPQHSTGLGGIP
ISDNSSSVESLNMKEWQDGLRALLPNININFGGLPNASSPSNANHSVPTSNTATTDSLNW
ESPGSWMDPAIITGIPASTGNSLDALQDDNPPHWLKSLQALTEVDGPSAAPSQTHHSNPF
GTQIPLHRASWNPYSPPSNPTSFHSPPPGFQTAFRPPSKTPTDLLQSSALDRH
NT seq
2142 nt
NT seq
+upstream
nt +downstream
nt
atgtctcgcagccctgatgctaaggaagaccctgtggaatgccccctttgcatggagcct
ctggaaatcgatgacatcaacttcttcccttgcacctgtggctaccaaatatgtcgtttc
tgttggcatcgtatccgcactgatgagaatggactttgtcctgcttgcagaaagccatat
ccagaagatccagcagtgtacaaaccactgtcccaggaagagctgcagaggataaaaaat
gaaaagaaacagaaacaaaatgagaggaaacagaagatatcagagaatcgcaaacatttg
gccagtgtacgggttgtacagaagaaccttgtctttgtggtagggctatctcagcgccta
gcagatccagaggttttgaaacgaccagaatattttgggaagtttggtaaaatacataaa
gttgtcattaataacagcacatcatatgcaggctcacagggtccaagtgccagtgcatat
gtaacctacatccggtcagaagatgctctcagagccatacagtgcgtcaataatgtggtg
gtagacggcagaacacttaaggcatcattaggtacaacaaaatattgcagttattttcta
aaaaatatgcaatgtccaaaaccagactgcatgtatctacatgagctgggagatgaagca
gccagtttcacaaaagaggaaatgcaggcgggtaagcaccaggaatacgaacagaaacta
ctgcaagaattatacaaactaaaccccaactttctccagttatctacgggtacagttgac
aagaacaagaataaagtgacagcattgcagaggtatgatgtccctatcgacaaaccttca
gattccctcagtataggaaatggtgacagctcccagcagataacaaacagtgacacacct
tcaccaccacctggtttaacaaaacccaatccagtcatacccatcagttcatctaatcac
agtgcacggtccccttttgaaggggctgtaacagaatcacagtcgctcttctctgacaac
tttcggcaccctaaccccatccctagtgggcttcctccattccccagctctccacagact
tcaaatgactggcccacagcaccagaaccacagagcctcttcacatcagagactatacca
gtatcctcctccacagactggcaagcggcttttgggtttggttcctccaaacagcaagag
gacgacttagggtttgacccctttgacatcacccgcaaagccttagcagacctgattgag
aaggaactgtcagtccaagaccaaccttccctctcacccacctctcttcagaaccctacc
ccacacactacagctgccaaagggccaggttctggattcctgcatcctgctgcacccaca
aatgccaactctctcagtagcacctttccagtcatgccacagaggttcccacagtttcaa
cagcatcgagcagtttacaactccttcagttttccaggccaagcagctcgctatccttgg
atggccttcccacgcaatagcatcatgcacttgaaccacacagcaaatcccacctcaaat
agtaatttcttggacttgaatctcccaccacaacacagcacaggtctgggagggatccct
atatcagacaacagcagttctgtagagagtttaaatatgaaggaatggcaggacgggcta
agggcacttctaccgaacattaacatcaactttggtggactgcccaatgcttcttccccc
tccaacgccaaccacagtgtaccaacgtccaacactgccaccaccgacagcctgaattgg
gagagccctggcagctggatggaccccgcaatcatcacaggtatcccagcctccacagga
aacagtttagacgcccttcaagatgacaatcctccacattggctaaaatctcttcaggcc
ctcacagaggtggacggccccagtgcagcaccatcacagacacaccacagtaaccccttt
ggcacacagatccctctgcacagagccagttggaatccctactctcctccttcaaacccc
accagcttccattccccacctccaggctttcagacagccttcagaccccccagtaaaacc
cccacagatctactacagagctcagcactggatcgtcattag
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