Antrostomus carolinensis (chuck-will's-widow): 104527839
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Entry
104527839 CDS
T08541
Name
(RefSeq) pre-mRNA 3' end processing protein WDR33
KO
K15542
polyadenylation factor subunit 2
Organism
acar
Antrostomus carolinensis (chuck-will's-widow)
Pathway
acar03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
acar00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
104527839
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
acar03019
]
104527839
Messenger RNA biogenesis [BR:
acar03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage and polyadenylation specificity factor (CPSF) complex
104527839
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Beta-prop_THOC3
Beta-prop_WDR5
WD40
Beta-prop_WDR3_1st
WD40_CDC20-Fz
WD40_Prp19
Beta-prop_WDR3_2nd
WD40_WDHD1_1st
Beta-prop_EML
Beta-prop_CAF1B_HIR1
Beta-prop_EML_2
EIF3I
WDR55
WD40_Gbeta
Beta-prop_TEP1_2nd
Beta-prop_Aladin
Beta-prop_IFT140_1st
Beta-prop_WDR36-Utp21_1st
Beta-prop_EIPR1
Collagen
Beta-prop_WDR90_POC16_2nd
Beta-prop_WDR36-Utp21_2nd
ANAPC4_WD40
WD40_MABP1-WDR62_2nd
Beta-prop_SCAP
Beta-prop_IFT122_1st
Beta-prop_WDR75_1st
Beta-prop_RIG_2nd
WD40_RFWD3
Beta-prop_DCAF4
eIF2A
Motif
Other DBs
NCBI-GeneID:
104527839
NCBI-ProteinID:
XP_010169960
LinkDB
All DBs
Position
Unknown
AA seq
1081 aa
AA seq
DB search
HGADVKCVDWHPTKGLVVSGSKDSQQPIKFWDPKTGQSLATLHAHKNTVMEVKLNLNGNW
LLTASRDHLCKLFDIRNLKEELQVFRGHKKEATAVAWHPVHEGLFASGGSDGSLLFWHVG
VEKEVGGMEMAHEGMIWSLAWHPLGHILCSGSNDHTSKFWTRNRPGDKMRDRYNLNLLPG
MSEDGVEYAPGDDLEPNSLAVIPGMGIPEQLKIAMEQEQMGKDESNDIEMTIPGLDWGME
EVMQKDQKKVPQKKVPYAKPIPAQFQQAWMQNKVPLPPPPEPLNDRKEDIKLEEKKKTQA
EIEQEMAALQYTNPQLLEQLKIERLAQKQAEQVQPPPPGGSLHGPQPFPGQGPMSQMPQG
FQQPLPPQQMPMNMPQMGPPGPQGQFRPPGPQGQMGPQGPLHQGAAGPQGFMGPQGPPGP
QGPPQGMPRPQDLHGHQGMQRHPGPHGPMGPPGPQGNAGPQGHLGPQGLPGSQTHLGPQG
PPGPQGHLGPQGPPGGQGMQGPPGPRGMQGPLPHGMQGAPGSQGMQGPISQGPLMGLNPR
GMQGPPGPRDNQGPNPQGMMMGHPQEMRGPHMQSGLLGHGPQEMRGLQGPPPQGTMLGPP
QELRGPPGPQGQQGPPQGSLVGPQGNMQGPQGQPNPSRGPHPSQGPLPFQQQKTPLLGDG
PRPPFNQDGQNPGPPPLIPGLGQQGGQGRLGPHNQGPGLNKGDSRGPPNHHMGPLSDRRH
DQNSGGPDHGPERGLFRGGQEWGDGRDSRGMPDRRGPHPDFHDDFDRPDDFRDDFHPDKR
FGHRLREFEGRGGPPLQDEKWRRGGPGPPFPPDHREFEGGGSNRGPPGAWEGRRPSDDRY
PRDPEDARFRGRRDESFRRGGPSRHEGRGPRGRDGFPGPEDFGPDDAFDSPDENSRGRDH
GGRGRGRGALRGGRKGLLPTPDEFPRFEGGRKPESWDGNREPGPRPDHPPHDGHSPANRE
RSSSLQGMDMASLPPRKRPWHDGPGTSDHREMDPPGGPPEERGKGRGNSGPSQRAPKSGR
SSSLDGDHHDGFHRDEAFGGGPAGGNNPSRGGRSGSNWGRGNNMNSGQSRRGASRGGGRG
R
NT seq
3248 nt
NT seq
+upstream
nt +downstream
nt
gacatggagcggatgtgaaatgtgttgactggcatccaacaaaggggttagttgtatcag
gaagtaaagatagccaacagcccatcaagttctgggatccaaagactggccagagccttg
ccacactacatgctcataaaaacacagtgatggaggtgaagctgaatctgaatggcaact
ggctgctaacggcttctcgtgaccatctctgtaagctctttgacattcgtaatctgaaag
aagaacttcaggtcttcagaggtcataagaaggaggccacagctgtggcctggcatcctg
ttcatgaagggctgttcgccagtggaggatctgatggctctttgttgttctggcacgttg
gggttgagaaggaggttggtggaatggaaatggcccatgaaggaatgatctggagtctgg
cgtggcatccccttggacacattctctgttcaggctcaaatgatcacaccagcaagtttt
ggactagaaatcgtcctggagataaaatgcgagatcgttacaacttgaatctgctccctg
ggatgtcagaggatggtgtggaatatgctccgggagatgatctggaacccaatagtcttg
cagttattcctgggatgggaatacctgagcaattgaaaatagccatggagcaagagcaga
tggggaaagatgagtccaatgatattgaaatgacaatcccaggactggactggggaatgg
aggaagtaatgcaaaaggaccaaaagaaggtgccacagaaaaaagtgccctatgcaaaac
caataccagcacagtttcagcaggcctggatgcagaataaagttcctttgcctcctccac
ctgagccattgaatgatagaaaggaagatattaagctggaggagaaaaagaagacacagg
cagagattgaacaggaaatggcagcacttcagtacacaaacccacaactcttagagcaat
tgaagattgagagacttgcacaaaagcaagctgagcaagtgcagccaccacctccaggag
gctctcttcacggaccccagccttttccagggcaaggcccaatgtcacagatgcctcaag
ggtttcagcagccccttccacctcaacagatgccaatgaatatgcctcagatgggacctc
ctggtccacaaggacagttcagacctccgggaccccaaggacaaatgggacctcagggcc
cattacaccaaggagctgcaggtccacaagggttcatgggaccacaaggacctccaggcc
cccaaggacctccgcaaggaatgccacggcctcaggatttacatggacatcaaggaatgc
agagacatcctggtcctcatgggccaatgggacctccaggtccacagggtaatgctggcc
cacaaggccacttaggaccacagggtctgcctgggtctcaaactcatttaggaccccagg
gtccacctggcccacaaggtcacctgggtcctcaaggtccccctggtggtcaaggaatgc
aagggccacctggtccccgaggaatgcaaggacctcttcctcatggcatgcaaggagctc
caggatctcaagggatgcagggccctatatctcaagggcctttgatgggacttaatccaa
gagggatgcagggtccaccaggacccagagataaccagggacctaatccacaagggatga
tgatgggtcatccacaagaaatgagaggtcctcatatgcaaagtggtttactaggacatg
gtccccaggagatgaggggcctccagggacccccacctcaaggtacaatgttaggaccgc
cacaagaattgcgtgggccaccaggtccgcaaggccagcagggacctccacaaggctctt
tagtggggcctcaaggaaacatgcaaggacctcagggacaaccgaatccttcaagggggc
cgcacccttcccagggccctctgcctttccagcagcagaaaacacctctgttgggtgatg
ggcctcgtcccccgtttaatcaggatggacagaacccaggtcctccaccactgataccag
gtctggggcagcagggaggacaaggtcgtcttggccctcacaaccaaggacctggtctta
ataaaggtgactcccgtggtccaccaaaccatcacatgggccctctctcagatagaaggc
acgaccagaacagtggtggtcctgatcatgggcctgagagagggttgtttcgaggtggcc
aggagtggggtgatggtagagacagcaggggcatgccagatagacgaggacctcacccag
atttccatgatgactttgatcgaccagatgacttccgtgacgacttccatccagataaga
gattcggccatcgattacgggaatttgaggggagaggaggcccaccattgcaagatgaaa
aatggagacgaggtggacctgggcctccctttcctcctgatcacagggaatttgaaggag
ggggttcaaaccgtgggcctcctggtgcttgggaaggacggagaccttcagatgatagat
atccacgggatcctgaggacgcacggttccgaggaagacgggatgagagcttcagaagag
gaggaccctcgagacatgagggccggggacccagggggagagatggctttcctggccctg
aagattttgggccagatgacgcttttgactctccagatgaaaactcaagaggaagggacc
atggtggtcgggggcgaggtcgtggtgctcttagaggaggccggaagggtttacttccca
ctccagatgaatttccacgctttgaaggagggcggaaaccagaatcctgggatggaaaca
gagaaccaggtcctcgtccagatcaccctcctcatgatgggcattctccagctaacagag
aacgttcttcttcgctccagggcatggacatggcctcattgccaccacgtaaacgtccct
ggcatgatggaccagggacctctgaccacagagaaatggatcctccaggtggaccaccag
aggagaggggcaaaggacgaggaaattcaggaccctcacagagagcaccaaaatctggga
ggtctagttctttagatggagaccatcacgatggattccacagggatgaagcttttggtg
gaggccctgcaggaggcaataacccttctcgaggaggaaggagcggaagtaattggggaa
gaggaaataacatgaactctggtcaatcaagaagaggagcatctaggggtggtggaagag
gccgatag
DBGET
integrated database retrieval system
