Antrostomus carolinensis (chuck-will's-widow): 104528489
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Entry
104528489 CDS
T08541
Symbol
SF3B1
Name
(RefSeq) splicing factor 3B subunit 1
KO
K12828
splicing factor 3B subunit 1
Organism
acar
Antrostomus carolinensis (chuck-will's-widow)
Pathway
acar03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
acar00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
104528489 (SF3B1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
acar03041
]
104528489 (SF3B1)
03036 Chromosome and associated proteins [BR:
acar03036
]
104528489 (SF3B1)
Spliceosome [BR:
acar03041
]
Complex A
U2 snRNP components
U2 snRNP specific factors
104528489 (SF3B1)
Complex B
104528489 (SF3B1)
Complex C
U2 SnRNP specific factors
104528489 (SF3B1)
Chromosome and associated proteins [BR:
acar03036
]
Eukaryotic type
Chromatin remodeling factors
B-WICH complex
104528489 (SF3B1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
SF3b1
PPP2R1A-like_HEAT
TOR1L1_N
HEAT_EZ
HEAT_EF3_N
HEAT_ECM29
Htt_N-HEAT_1
HEAT_2
XMAP215_CLASP_TOG
Adaptin_N
UNC45-central
DUF2298
TALPID3
Motif
Other DBs
NCBI-GeneID:
104528489
NCBI-ProteinID:
XP_010170815
LinkDB
All DBs
Position
Unknown
AA seq
1291 aa
AA seq
DB search
IEAQIREIQGKKPALDEAQGVGLDSTGYYDQEIYGGSDSRFAGYVTSIAATELEDDDDDY
PSTSLLGQKKPGYHAPVALLNDIPQSTEQYDPFAEHRPQKIADREDEYKKHRRMMIISPE
RLDPFADGGKTPDPKMNARTYMDVMREQHLTKEEREIRQQLAEKAKAGELKVVNGAASQP
PSKRKRRWDQTADQTPGATPKKLSSWDQAETPGHTPSLRWDETPGRAKGSETPGATPGSK
IWDPTPSHTPAGAATPGRDTPGHATPGHGGATSSARKNRWDETPKTERDTPGHGSGWAET
PRTDRGGDSIGETPTPGASKRKSRWDETPASQMGGSTPVLTPGKTPIGTPAMNMATPTPG
HIMSMTPEQLQAWRWEREIDERNRPLSDEELDAMFPEGYKVLPPPAGYVPIRTPARKLTA
TPTPLGGMTGFHMQTEDRTMKSVNDQPSGNLPFLKPDDIQYFDKLLVDVDESTLSPEEQK
ERKIMKLLLKIKNGTPPMRKAALRQITDKAREFGAGPLFNQILPLLMSPTLEDQERHLLV
KVIDRILYKLDDLVRPYVHKILVVIEPLLIDEDYYARVEGREIISNLAKAAGLATMISTM
RPDIDNMDEYVRNTTARAFAVVASALGIPSLLPFLKAVCKSKKSWQARHTGIKIVQQIAI
LMGCAILPHLRSLVEIIEHGLVDEQQKVRTISALAIAALAEAATPYGIESFDSVLKPLWK
GIRQHRGKGLAAFLKAIGYLIPLMDAEYANYYTREVMLILIREFQSPDEEMKKIVLKVVK
QCCGTDGVEANYIKTEILPPFFKHFWQHRMALDRRNYRQLVDTTVELANKVGAAEIISRI
VDDLKDEAEQYRKMVMETIEKIMGNLGAADIDHKLEEQLIDGILYAFQEQTTEDSVMLNG
FGTVVNALGKRVKPYLPQICGTVLWRLNNKSAKVRQQAADLISRTAVVMKTCQEEKLMGH
LGVVLYEYLGEEYPEVLGSILGALKAIVNVIGMHKMTPPIKDLLPRLTPILKNRHEKVQE
NCIDLVGRIADRGAEYVSAREWMRICFELLELLKAHKKAIRRATVNTFGYIAKAIGPHDV
LATLLNNLKVQERQNRVCTTVAIAIVAETCSPFTVLPALMNEYRVPELNVQNGVLKSLSF
LFEYIGEMGKDYIYAVTPLLEDALMDRDLVHRQTASAVVQHMSLGVYGFGCEDSLNHLLN
YVWPNVFETSPHVIQAVMGALEGLRVAIGPCRMLQYCLQGLFHPARKVRDVYWKIYNSIY
IGSQDALIAHYPRIYNDEKNTYIRYELDYIL
NT seq
3878 nt
NT seq
+upstream
nt +downstream
nt
atattgaagcacaaattcgagaaattcaaggaaaaaagcctgctcttgatgaagcacaag
gagtaggccttgattccacaggatattatgatcaagaaatttatggtggcagtgacagca
ggtttgctggatatgtcacttctattgcagcaacggaattggaagatgatgatgatgact
acccttctacaagtttgcttggccagaagaagccagggtaccatgctccagtggcattgc
ttaatgacataccacagtctactgaacagtatgatccttttgcagaacatcgtcctcaaa
agattgcagatcgggaagatgagtacaaaaagcacaggcggatgatgataatttcccctg
agcgtcttgatccttttgcagatggagggaagacaccagatcctaaaatgaatgccagaa
catacatggatgttatgcgtgaacagcatttaacaaaagaagagagggaaattaggcaac
aactagctgaaaaagctaaagctggagagcttaaagtcgtcaatggagccgcgtctcagc
caccttcaaaacgcaaacggcgttgggatcagacagctgatcagactcctggtgctacac
ccaaaaaattatccagttgggatcaagcagagactcctggacatacaccatctctgcgat
gggatgaaactccaggccgtgcaaagggtagtgaaactcctggtgccaccccaggctcaa
aaatatgggatccgactcccagtcatacaccagcaggagctgcaacgcctgggcgagaca
cgcctggtcatgcaacaccgggccatggcggtgccacttccagtgcacgtaaaaatcgat
gggatgaaacgcctaaaacagaaagagatactccgggacatggcagtggatgggctgaga
cgcctcgtacggatagaggtggtgactccattggtgagacaccaaccccaggagcaagta
aaagaaagtcacgatgggatgaaacacctgctagccagatgggtggcagcactcctgttc
tgacacctggcaaaacacccattggtacaccagctatgaacatggcaactcctacgccag
gtcatatcatgagcatgactcctgaacagctgcaggcttggcgttgggaaagggaaattg
atgagagaaacagaccactttctgatgaagaattggatgctatgtttccagaaggatata
aggttcttcccccaccagctggttacgtacctattcgcactccagctcgtaagctgacag
caactccaacgcctttgggtggtatgactgggttccacatgcagacagaagaccgtacta
tgaagagtgttaatgaccagccatcgggcaatcttccattcctaaaaccagatgatatcc
agtactttgataagctgctggttgatgttgatgaatcaactctgagtcccgaagaacaga
aggagagaaaaataatgaaattacttctgaaaataaagaatggcacacctcccatgagaa
aggctgcgttgcgacaaattactgataaagctcgagaatttggagcagggccgttgttta
atcagattctgcctctgctgatgtcaccaacacttgaagatcaggagcgtcacttgcttg
tcaaagtcattgacagaattctttacaaactggatgacctggtccgaccgtatgtacaca
agatccttgtcgtcattgaaccactgctgattgatgaagactattatgctagagtggaag
gcagagaaattatttcaaacttggctaaggctgctggtttggcaacaatgatctccacaa
tgcgacctgatattgataatatggatgaatatgttcgaaatacaacagctcgagcctttg
ctgtcgttgcttccgctttgggcattccttctctgttacccttcttgaaagctgtctgta
aaagcaaaaaatcctggcaggctcggcatactggcatcaagattgtacagcagattgcta
ttcttatgggttgtgccatcttacctcatctcaggagcttggttgaaattattgaacatg
gtctggtggatgagcagcagaaagttcgcaccatcagtgctttggctattgctgctttgg
ctgaggcagctacgccctatggtattgagtcatttgattctgttctgaagcctttatgga
agggtatacgtcaacacagaggaaagggtttggctgcctttttgaaggctattggctacc
tgattccactcatggatgctgagtatgcaaactattataccagagaagtcatgctaatcc
ttatcagagagttccagtctcctgatgaagagatgaaaaaaattgtgttgaaggtggtaa
agcagtgttgtggtacagatggtgttgaagcaaactacattaaaacagaaatcttgccac
cttttttcaaacacttctggcagcacagaatggcattggacagaagaaattacagacagt
tggttgatacaactgtggagctggcaaataaagttggagcagcagaaattatttctagaa
ttgtggatgatctgaaagatgaggctgagcagtacagaaaaatggtcatggaaacaattg
agaagataatgggaaatctgggggcagcagacattgatcataagctggaagaacaactta
ttgatggtatcttgtacgcctttcaggaacagaccacagaggattctgtgatgctgaatg
gttttggcacagtggttaatgctctaggcaagagagttaaaccctacttgccacaaatct
gtggtacagttttgtggcgtttgaacaacaaatcagctaaagttaggcagcaggctgctg
acctgatctctcgtactgcagttgtcatgaagacttgtcaagaggaaaaactgatgggac
acttgggtgttgtcttgtatgagtacctgggtgaagaatatcctgaagtactgggcagca
tacttggagcacttaaggctattgtgaatgttataggtatgcacaagatgacgccaccaa
tcaaagatctgctgccacgtcttacacctattttgaagaacagacatgagaaagtacagg
aaaattgtattgatcttgttgggcgcatagcagaccgaggtgcagaatatgtttctgcaa
gagaatggatgagaatctgctttgaactgcttgaattactaaaagctcacaagaaagcta
tccggagagccacagtgaacacttttggttatattgcgaaagctattggccctcatgatg
tattggctacactgctaaataacttgaaagtacaggaaaggcagaacagagtatgtacta
cagtggcaattgctattgtagctgaaacatgctcacctttcacagtgctgcctgcactca
tgaatgaatacagagttccagaactgaatgtccagaatggtgtgttaaaatctctttctt
tcctgtttgaatatattggagagatgggaaaagattacatttatgctgttacaccattgc
ttgaagatgctttaatggacagggatcttgtacacagacaaacagccagtgcagtggtac
agcatatgtctcttggtgtctatgggtttggctgtgaagattctctgaatcatttgttaa
attatgtatggcctaatgtgtttgaaacctctcctcacgtcattcaggcagttatggggg
ctctggagggcctcagagttgctattggtccctgcagaatgttgcagtattgtttacagg
gtttgtttcaccctgccaggaaagtcagagacgtttattggaagatctataattcaatct
acatcggctcacaggatgctctgatagcacattatccaagaatctataacgatgaaaaga
acacctatattcgttatgaacttgattacatcttataa
DBGET
integrated database retrieval system
