Antrostomus carolinensis (chuck-will's-widow): 104529135
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Entry
104529135 CDS
T08541
Symbol
COL4A6
Name
(RefSeq) collagen alpha-6(IV) chain
KO
K06237
collagen type IV alpha
Organism
acar
Antrostomus carolinensis (chuck-will's-widow)
Pathway
acar04510
Focal adhesion
acar04512
ECM-receptor interaction
acar04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
acar00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
104529135 (COL4A6)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
104529135 (COL4A6)
09142 Cell motility
04820 Cytoskeleton in muscle cells
104529135 (COL4A6)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
acar04147
]
104529135 (COL4A6)
00536 Glycosaminoglycan binding proteins [BR:
acar00536
]
104529135 (COL4A6)
Exosome [BR:
acar04147
]
Exosomal proteins
Exosomal proteins of other cancer cells
104529135 (COL4A6)
Glycosaminoglycan binding proteins [BR:
acar00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
104529135 (COL4A6)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Collagen
C4
Motif
Other DBs
NCBI-GeneID:
104529135
NCBI-ProteinID:
XP_010171641
LinkDB
All DBs
Position
Unknown
AA seq
1672 aa
AA seq
DB search
MKIMLMIFQPLLIVRGGGKKPFSGPCGGRDCTAGCKCFPEKGARGRPGPIGLQGPIGAPG
FTGPEGLPGAKGERGAVGPPGPTGQKGDKGPMGVPGFQGINGIPGHPGQPGPRGLPGLDG
CNGTTGSPGVSGSDGFPGLPGLPGRPGPKGVKGEPVFAQGSLKGMKGENGLPGLDGISGP
KGFPGPVGSAGPIGLPGLQGPMGPPGPPGPKGNMGLGFQGEKGEKGDVGLPGPPGPPPST
GILEFMGFPKGKQGEKGFGGVGEKGEKGVPGLPGGRGLLGLDGSDGIPGRKGHPGIPGYP
GLDGFEGMKGELGDIGPPGPPIVIDREGVVISGAPGDPGNPGIPGPPGDEGISGLPGLPG
APGFPGLERDGMGPGGSPGIPGMKGEVGEPGRAMIGLPGPRGRDGLPGLPGAPGLPGSPR
PSFPPDTILDGRIGATGEPGQRGLPGALGPKGYKGEAGDCACDGGVTRAGLKGISGLPGP
SGSPGVPGIKGVAGDPGTVGAPGLRGPTASAGQQGLPGLKGEKGDLSYATGRGARGDRGT
TAPRGPSGIPGSPGRDGLPGLPGPPGLPGDGGLGFPGEKGLPGLPGSKGHRGETGSPGIG
YPGPSGVRGLPGDPGMDGFPGQAGLPGPPGITLPCIVPGAYGPPGTPGFSGLPGPKGSKG
FPGIPGQPGLHGSKGQPGSPGIIGLQGEPGFPGPRGEQGSQGLPGLDGTDGLPGKMGASG
LAGTKGAPGDVFGAESGAPGDRGRPGLPGDKGLTGDLGFPGPKGLDGRPGLLGIKGKQGD
PGYSGVPGLRGPPGPGGPFGIKGKPGPLGSVGLTGAPGCQGLPGAKGLTGDVGPQGPAGM
KGFPGLDGAPGSPGERGFLGPPGTFGQDGRPGFSGPKGEKGSSGLLGFPGMPGLPGVPGV
NGFKGTSGTAGEKGSPGVVGLQGQKGDRGDVGPPGLPVLGPPEQALQFKGDKGDPGLAGL
GGFPGPRGDKGIPGSRGQLGLPGPAGSASKERGLPGDPGFPGPSGQPGLPGQKGTHGIIG
FPGMPGERGSDGITGTLGLPGSVGLPGPKGDQGETVGVPGIAGAKGERGDPGFPGERGRE
GLKGEPGYPGNTGVNGLKGGPGDLGQEGPAGIPGNAGLRGISGPPGPPGQPGSVGFPGAR
GTAGPKGFPGFPGLNGLNGLPGTKGSPGTPGLSEAGLKGPAGLPGPKGEEGSPGLGRGAV
GFPGPKGSSGDMGPPGPVGLPGLPGTPGASLPSDIRGRPGDAGVPGTDGSSGLPGPPGPP
GPPGPAADQGDTGSPGFPGVLGLRGIKGDVGPTGPVGLPGASGFKGIRGEPGLMGMPGKD
GPPGDPGHPGLKGETGRRGLPGRQGAPGITPQPEEITAPAGLPGLPGIDGVPGFDGDPGF
QGPAGKPGTKGLPGRSGLKGRDGLPGSPGIVGDPGPSGAPGPQGFEGVAGKPGSLGLPGM
PGRSVGVGYTLVKHSQSDQIPPCPIGMNKLWDGYSLLYVEGQEKSHNQDLGFAGSCLPRF
STMPFIYCNINEVCYYASRNDKSYWLSTTAPIPMMPVDSGQIPQYISRCSVCEAPSQAVA
VHSQDITIPQCPLGWRSLWIGYSFLMHTAAGAEGGGQSLVSPGSCLEDFRATPFIECNGA
RGTCHYFANKYSFWLTTVEQSQQFVSAPPSETLKAGQLRTRVSRCQVCMKNL
NT seq
5019 nt
NT seq
+upstream
nt +downstream
nt
atgaagataatgctgatgattttccagccattactgatagtcagaggtggtgggaagaag
cctttcagtgggccatgtgggggccgtgattgtaccgctggatgcaaatgttttccggag
aagggtgcacggggtcgaccaggaccaattgggcttcaaggaccaataggtgcacctgga
tttactggcccagaaggtttgccaggagcaaaaggtgagagaggagcagtgggcccccct
ggaccaactggacagaaaggtgacaagggcccaatgggagttccaggatttcagggcatc
aacggaatcccaggtcaccctgggcagcctggacctagaggtctgcctggcctcgatggt
tgcaatggtaccactgggagccctggcgtttctggatcagatgggtttcctggcctacct
gggctgcctggtcgtcctggcccaaaaggtgttaaaggagaacctgtttttgctcaaggc
agtcttaaaggaatgaagggagaaaatggtcttcctggattggatggaatttctggccca
aaaggttttccaggtccagtaggttctgcaggccctataggattaccaggtttgcagggt
ccaatgggtccccctgggccaccaggtccaaaaggtaacatgggattaggctttcaagga
gagaaaggagaaaagggtgatgtagggctgccaggccctccaggtcccccaccatccact
ggaatactggaattcatgggatttccaaaagggaagcaaggagaaaagggctttggaggt
gttggagaaaaaggagaaaaaggtgtgcctggcttacctggtggcaggggtcttttggga
ctggatggatctgatgggattccagggagaaagggtcatccaggtattcccggctatcca
ggactggatggatttgaaggcatgaagggtgaattaggtgacattggtcccccaggccct
cctatcgttattgacagggaaggtgtagtcatttcaggtgccccgggtgaccctggaaac
ccgggaatacctggtcctccaggagacgaagggatcagtggtttaccaggccttccagga
gctccaggatttccaggcctggaaagagatggaatggggcctggaggatctccaggtatt
ccaggtatgaaaggtgaagtgggagaaccaggaagagcaatgattggattaccaggccct
cgaggcagagatggtttaccaggtctgccaggagcaccaggattgcctggctcaccacgc
ccttcatttcccccagacacgatcctggatggaaggattggtgccacaggggagcctgga
caaagagggcttccaggagctttgggtccaaaaggatacaaaggagaagcaggtgattgt
gcttgtgatggaggagttacaagagctggtctaaaaggcatctcaggtcttccaggtcca
tcaggaagccctggtgtgcctgggattaagggcgttgctggagacccaggcactgtgggt
gcaccaggactgcgaggccctacggcttcagctggtcagcaaggtcttccaggccttaag
ggagaaaaaggggatttgtcctatgcaacaggcagaggtgctcgtggggaccgtggtaca
acagcacccagaggaccttcgggcatcccaggaagccctggcagggatggacttccaggc
ttgccaggcccaccaggccttccaggtgatggtgggctgggtttcccaggtgaaaaagga
ctgccaggattacctggctccaagggccatcgtggagaaactggttctcctggcattgga
tatccaggtcctagtggagttcgtgggctgccaggtgatccaggaatggatgggtttcca
ggacaagcaggtcttccaggccctccaggtatcaccttgccctgcatagttcctggagca
tatgggcccccagggactcccggcttttcaggattgccaggtccaaaaggcagcaaaggc
tttcctggcattccaggccaacctggattacatgggtcaaaaggacagccagggtctcca
ggaataataggcttgcaaggggaacctggcttccctgggcctcgaggagagcaggggtca
caaggacttccagggctggatggaacagatggtttgcctgggaaaatgggtgcttcaggc
ttagctggaacgaaaggagctcctggagatgtatttggtgctgagagtggagccccggga
gaccgtggccgacctggactcccaggtgataaagggcttacaggtgatcttggatttcca
ggaccaaaagggttagacggaagaccaggcctcctgggtattaaaggcaaacagggtgat
ccaggatattcgggtgtccctggactgcggggacctcctggtcctggaggtccttttggc
attaagggaaaaccaggacccttggggtcagttggccttacaggagcaccaggctgtcaa
ggacttcctggagccaaaggcttgactggggatgtaggtccacaaggccctgctggtatg
aaaggcttcccaggtcttgatggtgctccaggatctcctggggaaagaggattcttaggg
ccacctgggacttttggtcaagatggacgtccaggtttctctgggccaaaaggagagaaa
gggtcttctggcctgcttggtttccctggcatgccaggcctgcctggtgtccctggggtg
aatggatttaaaggaacttctggcacagctggagaaaaagggagccctggcgttgtggga
ctccaaggtcaaaaaggtgacagaggtgatgtaggtccacctggtcttcctgttcttgga
cctccagaacaggcactgcaattcaaaggagacaaaggagatcctggattagctggactt
ggagggttccctggacctagaggtgacaaaggaatcccaggaagccgtggacagcttggt
ctccctggtccagctgggtcagcaagcaaagagagaggtcttcctggtgacccaggcttc
cctggtccatctggacagcctggtctgccaggacagaagggtacacatggtatcatagga
tttccaggaatgccaggagagaggggttcagatggtatcacaggaacacttgggttgcct
ggatctgttggcctccctggtcctaagggtgaccagggagagactgttggcgttcctggc
attgctggagcaaaaggagagcgaggggacccagggtttccaggagagagaggcagagaa
ggactcaagggtgaaccaggctacccaggaaacactggggtgaacggactcaaaggtggc
ccaggagatcttggccaagaaggaccagcaggaatccctggaaatgctgggctgagagga
atctctgggccaccgggacctccagggcagccaggatctgtcggattcccaggagctcgt
ggaacagcaggacctaaagggtttcctggatttccaggtttaaatggtctgaatggcttg
ccaggcacaaaagggtctcctggaacaccaggtctgagtgaagctggactgaaaggccct
gcaggtctcccaggtccgaagggtgaagaaggttctccaggcttgggtagaggagctgta
ggattccctggaccaaaaggctcatcaggagacatgggtccccctggtcctgtgggactg
cctggcttgccaggaacacctggagcttctcttccttcggatatacgtgggagacctggg
gatgctggcgttccagggactgatgggagttcaggtcttccaggtcctccaggaccacca
ggtccccctggcccagctgctgaccaaggtgacacagggagtccaggtttccctggtgtt
cttggcttgagaggcattaagggtgatgtgggacccactggtccagttggactccctgga
gcatctggattcaaaggtataagaggagagcctggccttatggggatgccaggtaaagat
gggcctccgggggatcctggtcaccctggcctgaaaggtgaaacgggccggcgaggtctc
cctggccgacaaggggctccaggtataacccctcagccagaagaaatcacagcccctgca
ggcttacctggtttgccaggaattgatggtgtccctggctttgatggagatcctggattc
cagggtccagctggaaaaccaggtacaaaagggctgccaggaagatctggtttgaaagga
cgtgatggtttacctggatcacctggcatagtcggggatccaggaccttcaggtgcccca
ggaccacaaggatttgaaggtgttgctggaaagccgggctcacttggtttgccgggaatg
cctggtcggagcgtgggcgttggatacactttagtgaagcacagtcagtcagaccaaatc
ccaccttgtcctataggaatgaataagctctgggacggctacagcttattgtatgtggag
gggcaggaaaagtcacacaaccaggatcttggctttgctggctcgtgtttgcctcgcttc
agcaccatgccttttatttactgcaacattaacgaagtgtgctactacgccagccgcaat
gacaagtcctactggctctccaccactgctcctatccccatgatgccagtggacagtggt
cagatcccacagtacatcagtcgctgctcagtgtgcgaagcaccttcgcaggctgtggct
gtgcacagccaggacatcaccatcccacagtgtccccttggctggcgcagcctgtggata
ggatactcctttcttatgcacactgcggctggtgccgaaggcggaggtcagtcccttgtc
tcacctggctcttgcctggaggatttccgtgctactccattcattgaatgcaatggtgcc
aggggaacgtgccactactttgcaaacaaatacagcttctggctgacgactgttgaacag
tcgcagcagtttgtcagtgctcctccctcagaaactctgaaagcaggacagcttcgaaca
agggtcagccgctgccaagtctgcatgaagaacttgtaa
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