Antrostomus carolinensis (chuck-will's-widow): 104530263
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Entry
104530263 CDS
T08541
Symbol
COL11A1
Name
(RefSeq) collagen alpha-1(XI) chain
KO
K19721
collagen type V/XI/XXIV/XXVII, alpha
Organism
acar
Antrostomus carolinensis (chuck-will's-widow)
Pathway
acar04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
acar00001
]
09140 Cellular Processes
09142 Cell motility
04820 Cytoskeleton in muscle cells
104530263 (COL11A1)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
acar00536
]
104530263 (COL11A1)
Glycosaminoglycan binding proteins [BR:
acar00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
104530263 (COL11A1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Collagen
COLFI
Laminin_G_2
Laminin_G_1
Laminin_G_3
DUF4763
Motif
Other DBs
NCBI-GeneID:
104530263
NCBI-ProteinID:
XP_028942518
LinkDB
All DBs
Position
Unknown
AA seq
1819 aa
AA seq
DB search
EPVDVLKALEFHNSPEGVSRTAGFCTNRRDSKGSDVAYRVSKTAQLSAPTRQLYPGGDFP
EDFSILMTVKPKKGIQSFLLSVYNEQGIQQVGVEVGRSPVFLFEDQNGKPAPEDYPLFRT
VNIADGKWHRVAISVEKKSVTMIVDCNKKTTKPLDRSDKTVVDTNGITVFGTRILDEEVF
EGEIQQLLIIADPRAAYDYCEHYSPDCDSPVPGAAQAQDPQVDEYTPEDFIEYDYEYGDA
DYKETDSVTEGPPLFEETVAQTEKKKAMVKKKKRTVAASSKDKPQKATTKKSEKYASKKK
KSYQAAAKGKLGVKANVVDGFQEYSIAENDYGPQTEAPFRTTEANEQNPVEEVFAEEYIT
GEDYDKKTEETEYGSRGVDLSESDLLVDGDLGEYDFYEYKEYEEKPTDSTNEEFGPGVPA
ETDITETSVTGHGAYGEKGQKGEPAVIEPGMLIEGPPGPRGPAGLTGPPGLQGPVGPPGD
PGERGPPGRPGLPGADGLAGPPGTMLMLPFRFGGDGEKGPTISAQEAQAQAILQQARIAM
RGPPGPMGLTGRPGPVGGPGAAGAKGENGEPGPQGPRGVQGSPGPSGKAGKRGRPGADGA
RGMPGEPGAKGDRGFDGLPGLPGDKGNRGDRGPQGPPGLPGEDGSRGEDGEVGPRGLPGE
AGPRGLLGPRGTPGPPGQPGIAGIDGPSGPKGNMGPQGEPGPPGQQGIPGPQGLPGPQGP
IGPPGEKGPQGKPGLPGLPGSDGPPGHPGKEGQSGDKGALGPPGPQGPIGYPGPRGVKGA
DGVRGLKGSKGEKGEDGFPGFKGDMGLKGDRGEVGQPGPRGEDGPEGPKGRAGPSGDPGA
AGPAGEKGKLGVPGLPGYPGRQGPKGSTGFPGFPGANGEKGARGLHGKPGPRGQRGPTGP
RGSRGPRGPTGKPGPKGTAGNDGPPGPPGERGPQGPQGPVGFPGPKGPPGPPGKDGLPGH
PGQRGETGFQGKTGPPGPGGVVGPQGPTGETGPIGERGHPGPPGPPGEQGLPGAAGKEGA
KGXXXXXXIPGKDGPAGLRGFPGERGLPGAQGPAGLKGGEGPQGPPGPIGSPGERGAAGT
AGPIGLPGRPGPQGPPGPAGEKGAPGEKGPQGPAGRDGVQGPVGLPGPAGPSGSPGEDGD
KGEIGEPGQKGSKGDKGENGPPGPPGLQGPVGAPGIAGGDGEPGPRGQQGMFGQKGDEGP
RGFPGPPGPIGLQGLPGPPGEKGENGDVGPMGPPGPPGPRGPQGPNGADGPQGPPGSIGS
VGGVGEKGEPGEAGNPGPPGESGTSGPKGERGEKGEAGPPGAAGPPGAKGPPGDDGPKGN
PGPVGFPGDPGPPGEPGPAGQDGVGGEKGEDGDPGQPGPPGPSGEAGPPGPPGKRGPPGA
TGAEGRQGEKGAKGEPGAEGAPGKTGPVGPQGPAGKPGPEGLRGIXXXXGEQGLPGAPGQ
DGPPGPLGPPGLPGLKGDPGSKGEKGHPGLIGLIGPPGEQGEKGDRGLPGPQGSPGAKGD
AGISGPAGPLGPPGPPGLPGPQGPKGSKGSSGPAGQKGDSGLPGPPGPPGPPGEVIQPLP
IQSPKKTRRSPDYMLSDAGDNILDYSDGMEEIFGSLNSLKQDIEHMKYPMGTQNNPARTC
KDLQLCHPDFPDGEYWIDPNQGCSGDSFKVYCNFTAGGETCIYPDKKSEGVRISSWPKEN
PGSWFSEFKRGKLLSYLDVEGNSINMVQMTFLKLLSASARQNFTYNCHQSVAWHDASSDS
YDKALRFLGSNDEEMSYDNNPYIKALHDGCASRKGYGKTVIEINTPKIDQVPIVDVMIND
FGDQNQKFGFEVGPVCFLG
NT seq
5462 nt
NT seq
+upstream
nt +downstream
nt
ctgaacctgttgatgtgctaaaagcgttagaatttcacaattcaccagaaggagtatcaa
gaacagcaggattttgcacaaatagaagggattcaaaaggatcggatgttgcctacagag
tttcaaaaactgcacagctgagtgctccaacaaggcagctttacccgggtggagattttc
cagaagatttttcaattttaatgacggtgaaacctaaaaagggtatccagtccttccttc
tgtctgtctacaatgaacaaggaattcagcaagtaggtgttgaagttggtagatcccctg
tctttctgtttgaagaccaaaatggaaaacctgccccagaagactatcctcttttcagaa
cagtcaacattgctgatggcaagtggcatcgagtagctattagtgtggagaaaaaaagtg
ttacaatgattgttgactgtaacaaaaaaactacaaaaccacttgatagaagtgacaaaa
cagttgtggacaccaatggtatcactgtctttggaaccaggattctggatgaagaagttt
ttgagggtgagatccaacagctgttgattatagctgaccctagagctgcatatgactact
gtgagcattatagcccagactgtgattccccagtgcccggtgctgctcaggctcaagatc
ctcaagtcgacgagtacacaccagaagattttatcgaatatgactatgagtatggggatg
cagattataaagaaactgattctgtaacagagggacccccactgtttgaagagacagtag
cacaaacagagaaaaagaaagccatggtcaaaaagaagaagaggacagtggccgctagct
caaaggacaaaccccaaaaggccacaacaaaaaaatctgaaaaatatgcatccaagaaga
agaaaagttatcaagcagcagcaaaaggcaaactaggggtaaaagcaaacgttgttgatg
gatttcaagaatatagcatagctgaaaatgactatgggccccagacagaagctcccttca
gaactactgaagcaaatgagcaaaatcctgttgaagaagtatttgctgaagaatacataa
ctggagaggattatgataaaaaaactgaggaaactgaatatggaagcagaggagtagacc
tcagtgaatctgatctgctggtagatggagatttaggcgaatatgatttttatgaatata
aagaatatgaagagaaaccaactgattccactaatgaggagtttggtccaggtgttcctg
cagagaccgatatcacagaaacaagcgtgactggacatggggcttatggagaaaaaggcc
aaaagggagaaccagctgtgattgaacctggtatgcttattgaaggaccaccgggaccaa
gaggacctgctggtcttacaggtcccccaggtctacaaggtcctgttggtcctccaggtg
accctggtgaaaggggtccacctggtcgccctggtctccctggtgctgatggtttagcag
gtcccccaggtaccatgttaatgttgccgttccgctttggtggagatggtgagaagggcc
caacaatctcagctcaggaagctcaagcacaagctattcttcagcaagctaggattgcta
tgaggggtccacctggtcccatgggactcactggaagaccaggtcctgtgggcggacctg
gagcagcaggcgctaagggtgaaaatggtgaaccaggtccccagggtcctcgtggtgttc
aaggttcccctggtccaagtggaaaagctggcaaaaggggacgtcctggagctgatggtg
ccagaggaatgccaggagaacctggtgcaaagggcgacagaggatttgatggtcttcctg
gcctccctggtgacaaaggtaacaggggagaccgtggcccacagggacctcctggtttac
ctggtgaagatggatcaagaggagaagatggggaagttggaccaagaggcctcccaggtg
aagctggtccacggggattactgggccccagaggtacacctggtccccctggacaacccg
gcattgcgggtattgatggaccttcaggcccaaaaggaaatatgggtcctcaaggggaac
caggacctcctggtcagcaaggaatcccaggcccacaagggcttcctggtccgcaaggtc
ctattggacctcctggtgaaaaaggacctcaaggcaagcctggccttcctggccttcctg
gttctgatgggcctcctggtcatcctggaaaagagggtcagtctggagataaaggtgcat
tggggcctccaggtcctcagggtcccattggctatccaggtcctcgtggtgtaaagggag
ctgatggtgtccgtggtctcaagggatccaaaggtgaaaagggtgaagatggttttccag
gatttaaaggtgacatgggccttaaaggtgaccggggagaagttggtcagccaggtccac
gaggagaagatggtccagaaggtccaaaaggtcgagcaggtccgtctggggacccaggtg
ctgctggtccagctggtgaaaagggtaagcttggtgtacccggattgccaggatatccag
gaagacaaggtccaaagggctcaactggtttcccaggatttccaggtgccaatggagaga
aaggtgcaaggggattacatggtaaaccaggccccagaggacagcgaggaccaacgggtc
caagaggctcaagaggccccagaggtcccactggcaaaccaggtccaaagggtactgcag
gcaatgatggtcctcctggcccaccaggtgaaaggggaccacaagggcctcagggacctg
ttggattccctggaccaaagggacctccagggccacctggaaaagacggcttgcctgggc
acccaggacagcggggtgaaaccggttttcaaggaaaaactggtccgcctggtcctggtg
gtgttgttggccctcagggtcccactggtgagactggcccaattggtgaaagaggtcacc
caggtcctcctggcccaccaggtgaacaagggcttccaggtgctgcaggaaaagaaggtg
ctaagggcaannnnnnnnnnnnnnncattcctgggaaagatggaccagcaggacttcgtg
gtttccctggagagagaggccttcccggtgctcagggtccagctggtctgaaaggagggg
aaggcccacaaggcccacctggcccgattggttcaccaggggaacgtggagcagcaggca
ctgctggcccaattggtctaccaggtcgtcctggacctcagggtcctccaggccccgcag
gggagaagggtgctcccggtgaaaaaggtcctcaaggtccagctggacgtgatggagtac
agggtcctgtaggacttcctggtcctgctggtcctagtggttctcctggagaagatggtg
acaagggtgaaattggtgaaccgggtcagaaaggtagtaaaggtgacaagggagaaaacg
gtcctccaggtccaccaggtcttcagggtcctgttggtgctcctggtatagctggaggtg
atggggagccaggcccaagaggacagcaagggatgtttggacaaaaaggtgatgaaggtc
ctcgaggcttccctggccctccaggccctattggcttacagggtctgcctggcccaccag
gcgaaaagggtgaaaatggtgatgtgggcccaatgggtccacctggccctccaggtccaa
gaggtccccagggtcctaatggagctgatggccctcaaggccccccaggctcaattggct
ccgttggaggtgttggtgaaaagggtgaacctggagaagctggtaaccctggacctcctg
gagaatctggaacatctggtccaaaaggtgaaagaggagaaaaaggtgaggctggtccac
ctggagcagctggaccaccaggtgctaaaggacctccaggtgatgatgggcctaagggta
acccaggcccagttggttttcctggagatcctggtccccctggcgaacctggtccagctg
gtcaagatggtgttggtggagagaagggtgaagatggtgatcccggtcaacctggtccac
caggtccttcaggtgaagctggcccacctggtccacctgggaaaagaggacctcctgggg
caactggtgctgaaggcagacaaggtgaaaaaggtgcaaagggtgagcctggtgcagaag
gggctcctggaaaaacaggtccagttggtccacagggacctgcaggaaaacctggcccag
agggtctccggggcattnnnnnnnnnnagggagaacaaggtctacctggagcaccaggtc
aggatggccctcctgggcctctgggtccacctggcttgcctggcctgaaaggagacccag
gttccaaaggagagaagggacatcctggtttgattggcctgattggacctccaggagaac
agggtgaaaagggtgataggggtcttcccggccctcagggatctcctggagccaagggtg
atgcaggaatttctggtcctgctggtccactcggaccccctggtcctcctggtttacctg
gtccccaaggtccaaaaggttccaaaggatccagtggtcctgctggtcaaaagggtgaca
gtgggttacctggtccacctggtcctccaggtcctccaggtgaggtaatccagccactgc
caatccagtcacccaaaaagacaagaagatctcctgattacatgttgtctgatgctggtg
ataacattctggattattccgatggcatggaagagatctttggttcattgaattcactga
agcaagacatcgagcatatgaaatatccaatgggcacccagaataacccagcccgaactt
gcaaagacttgcaactctgccacccggacttcccagatggggaatattggattgatccta
accagggctgttctggagactccttcaaagtatactgcaatttcacagcaggtggagaaa
cttgcatctacccagataagaaatctgaaggcgttagaatttcatcatggccaaaggaga
atccaggatcttggtttagtgaatttaagcgaggcaaacttctttcctatttggatgttg
aaggcaattctattaatatggtccagatgacattccttaaactactgagtgcttctgcca
gacaaaatttcacgtacaactgtcatcagtccgtagcttggcatgatgcatcatctgaca
gctatgacaaagcactaaggttcttaggatcaaatgatgaagaaatgtcttatgacaaca
atccttacatcaaagctcttcacgacggctgtgcatcaagaaagggctacggaaagacgg
tgatcgaaatcaacacacccaaaatagaccaggtgcctatagttgatgtgatgatcaatg
actttggtgatcagaaccagaagtttggctttgaggtcggtcctgtctgcttccttggtt
aa
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