Antrostomus carolinensis (chuck-will's-widow): 104532096
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Entry
104532096 CDS
T08541
Name
(RefSeq) LOW QUALITY PROTEIN: E3 ubiquitin-protein ligase SHPRH-like
KO
K15710
E3 ubiquitin-protein ligase SHPRH [EC:5.6.2.-
2.3.2.27
]
Organism
acar
Antrostomus carolinensis (chuck-will's-widow)
Brite
KEGG Orthology (KO) [BR:
acar00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
acar04121
]
104532096
Enzymes [BR:
acar01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
104532096
Ubiquitin system [BR:
acar04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Other single Ring-finger type E3
104532096
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
SNF2-rel_dom
SHPRH_helical-1st
SHPRH_helical-2nd
Linker_histone
zf-RING_UBOX
PHD
zf-C3HC4_3
zf-C3HC4
zf-C3HC4_2
zf-RING_2
zf-RING_5
TPR_12
PEP-utilisers_N
TPR_10
TPR_2
TRAF3_RING
Motif
Other DBs
NCBI-GeneID:
104532096
NCBI-ProteinID:
XP_028943098
LinkDB
All DBs
Position
Unknown
AA seq
1514 aa
AA seq
DB search
MSSRRKRAPPSKIDEEKKKMLCWNMHEDRRNEVITLDDEITDEDHVPGPSTSSASFIIID
DDSTDEDLIKKEGSGSKSVTFLTVNDEDDSYSMLAPVSVQLNIIVLPYRADGSWKALLGE
FALRLPSEQILTDKFHERSFTLRGDTDDQLQVCVHERSEEECGNETKEYLGAYEQCILVE
PTLCGEILEGLRWLQKKKIIGLYQRPREAQALKVGIYLLEAGLSKPEFLSDGGGRPKKAN
QLIQKLMEKFYSFLIPDELEEDEEESDMELERQNIEELYDFVRHTHQQDIHLLREDVQHP
ALIPILRPYQSEAVNWMLHRENFTSTPSSENALHFLWREVTTLDGVKIYYNPFTGCIIRE
YPIAGPQWPGGILADEMGLGKTVEVLALILNHTRPDIKQDDLALPEGKLVNFFVPPQPLE
GNTKKKTKEVELKLKEKIQYPSLRVMILAAVKEMNVKKGASIIAIFKYISAVYRYDIQRH
KWLLKRTLEKLITEQVVEQVRGHGLAGSFKLGKNYKEQKRRERTKEQISKTSKSIQKKQL
VAAKTQTKESRNRDVTSENVLKTPLQMGITMEEHDYCTTSKNNRKSEADXXXXXXXXXXX
QEAVVPKSPDLPGSLLVSSDMSSHPDFDVSKTTADVPKDQSSHSQERAGSSVQHTSSVFP
FNTSEYRFECICGELGLADYKARVQCLKCYLWQHAECVNYKEENLKIKPFYCPHCLVAMK
PVSTGATLIISPSSICHQWVDEINRHVRSSSLRVLVYQGVKKHGFLQPHMLAEQEVVITT
YDVLRTELNYVDIPHSNSEDGRRFRNQKRYMAIPSPLVAVEWWRICLDEAQMVECTTAKA
AEMALRLSGINRWCVSGTPVQRGLEDLYGLVLFLGVDPYWVKHWWDQLLYRPYCRKNPQP
LYSLIAKIMWRSAKKDVIDQIQIPPQTENVHWLHFSPVERHFYHRQHEVCCQDALAKLRK
ISDWTLKLSSLDRRTVTSILYPLLRLRQACCHPQAVRGEFLPLQKSTMTMEELLTSLQKK
CRTECEEAHRQLVCALNGLAGIHIIKGEYALAVELYREVLRSSEEHKEKLKTDSLQRLHS
THNLMELLSAKHPGIPPTLRDSRLAEEAEQLRQHYMSKSNAEVAEAHQALQPVLQNIREL
QRKIHSGSFWWLDVIQTAIQYAIDEELVQRVQNEIASNYKQQTNKLSMAEKFRDCRGLQY
LLTTQLEEVKKFQKIVREAVKNLEGPPSKQVIEAATICHLRPVRLPLNNCVFCKADELFT
EYESKLFSHTVKGQMAIFEEMIEDEEGLVDDRLPTTSRGLWATSETERALKAILSFAKAH
RMDARLTEEGSIFLELYEAWKKEYKLLHEYWMVLRDHVSAIDELAMATERLRVRHPDEPK
PNPPVLYIIEPHEVEQNRVKLLNDKAVAKSQLQKKLGQLLYLTNLEKSQDKTTGGVNPEP
CPICARQLGKQWAVLTCGHCFCNECVAIIIEQYSVGTRRSSIKCAICRQTTSHKEISYVF
TAETANQEDDIPVK
NT seq
4542 nt
NT seq
+upstream
nt +downstream
nt
atgagtagtcgtcgaaaacgcgcacctccatcaaaaatagatgaggagaaaaagaaaatg
ctctgctggaatatgcatgaagacaggagaaatgaggtgataacgttagatgatgaaatt
actgatgaggaccacgttccaggtccaagcacttcttctgcatccttcatcattatagat
gatgatagcactgatgaagatctaattaaaaaagaaggcagtggctcaaaatctgttacg
tttttgacagttaacgatgaagacgactcttactccatgttggctcctgtgtcagtacag
ctcaatattatagtcttgccgtaccgtgcagatgggtcctggaaagctttgttgggagag
tttgctcttcgtcttccctctgagcaaattctaactgacaaattccatgagaggagcttt
actttgagaggagacactgatgatcagctgcaagtctgtgttcatgaaagaagtgaagaa
gagtgtggtaatgaaacaaaagaatacttgggtgcttatgaacaatgtattttggtggaa
ccaaccttatgtggtgaaatattggaaggcttgagatggttgcaaaagaaaaagatcatt
ggactctatcaaagacccagagaggctcaagctttaaaggttggaatttaccttctggaa
gctggactaagtaaaccagagtttctcagtgatggagggggaagacccaaaaaagctaat
cagctgattcagaaactcatggaaaagttctatagttttttaattccagatgagctggaa
gaagatgaggaagaatctgacatggaactggagcgacaaaatattgaagagctttatgac
tttgtaaggcacacccatcagcaggatatccacttactgcgagaagatgtgcagcatcct
gcattaattcctattctgaggccataccaaagtgaggctgtgaactggatgcttcaccga
gagaacttcacaagcactccaagcagtgaaaatgcactgcacttcttatggcgggaagtc
accactctggatggagtaaaaatctactataatccatttactggctgtattatccgtgaa
tatcccattgctggaccccagtggcctggaggtattttagcagatgagatgggtcttgga
aaaacggtagaagtgctggctcttattctgaatcatacccggccagacattaaacaagat
gatctggcattacctgagggtaagcttgtgaacttctttgttccaccacaacctttagaa
ggaaatacaaagaaaaaaacaaaggaagtggagcttaaattgaaggaaaaaatacaatat
cctagcttacgagtgatgatattagcagctgtaaaagaaatgaatgtgaagaaaggagca
tccattattgcaatatttaagtacatcagtgctgtatataggtatgacatacagagacat
aaatggcttctcaaaaggactctagaaaaactgatcacagaacaggtggtagagcaagtc
agaggacatggtctggctggatctttcaagctgggaaagaattacaaggaacagaagagg
cgagaaagaaccaaagagcagatatcaaagacttcaaaaagcattcagaagaagcagctg
gttgcagctaaaactcaaaccaaagaatcaagaaacagggatgtcacttctgaaaacgtc
cttaaaactcctttacagatgggtatcaccatggaagaacatgattattgtacaactagc
aaaaataacagaaaatctgaagcagattnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnag
caggaagctgtggtcccaaaatctcctgatttgcctggcagcctccttgtctccagtgac
atgagcagtcatccagattttgatgtttctaaaactacagctgatgtcccaaaggaccag
tcctcacattcccaagaacgtgccggcagtagtgtacaacataccagttctgtgtttcca
tttaatacctctgagtatcgttttgaatgcatctgtggtgagcttggattggctgactat
aaagctcgtgtgcagtgcctgaagtgttacttatggcagcatgcggaatgtgttaactac
aaagaggaaaacctgaagatcaagcccttctactgtccccattgccttgtggcaatgaaa
ccagtttctacaggagcaactctgataatttctccaagttctatttgtcatcagtgggta
gacgagatcaacaggcatgtaagatcatcttctcttcgagttctggtgtatcaaggtgtg
aagaagcatggctttttgcagccacacatgttggcagagcaggaggtggtgatcaccaca
tacgacgtcctccgcactgaactgaactatgtagatataccccacagtaacagcgaagat
gggcgccggttcaggaaccagaagcggtacatggccatcccaagccccttagtagcagtg
gagtggtggaggatctgccttgatgaagcacaaatggttgaatgcactactgcaaaggct
gctgaaatggcactccgtttaagtggaatcaatcgctggtgtgtcagtggcactcctgtg
cagcgaggtttagaagatctgtatggattagtccttttccttggagttgatccttattgg
gtcaaacactggtgggaccaacttttatatcgaccttattgtaggaaaaatccccagcct
ctctacagtctaattgccaagataatgtggagatcagcaaagaaggatgtgattgaccaa
attcagatcccccctcagacagaaaatgttcactggcttcacttttctcctgtggagaga
cacttctatcatcgccagcatgaagtgtgctgccaggatgcgctggcaaaactcaggaag
atttcggattggacccttaagcttagtagcctggataggaggactgtgacttctattctg
taccctttgctgcggctgaggcaggcctgctgtcatccacaagctgttcggggagagttc
ttgccattacagaaaagcaccatgaccatggaggagctactaacatctctgcagaagaaa
tgtcgaacagagtgtgaggaagctcaccgacagttggtgtgtgctcttaatggcttagct
ggtatccatatcattaaaggagaatatgccctggctgtagagctgtacagagaagtgtta
cgatcatctgaagagcacaaagaaaagctcaaaacagattccttgcaaagacttcattct
acgcacaatttgatggaattgttgtctgcaaagcacccaggaattcccccaactttgcgt
gatagccgacttgcagaagaggcagaacaacttcgacagcattatatgagtaaatccaat
gcagaagttgcagaagcccatcaagccttacagccagttcttcagaacattcgggagctc
cagagaaagatacattcgggttctttttggtggttggatgtcatccagacagcaatacag
tatgccattgatgaggaacttgttcaacgtgtgcaaaacgaaatagccagcaactacaaa
cagcagactaataaactctccatggcagagaaattccgtgactgcaggggccttcaatac
ctgctcacaacccagctggaggaagtgaagaagttccagaagattgtaagagaagcagtg
aaaaacttagaaggccctccctctaagcaggttattgaggctgccactatctgccatttg
cgacctgttagacttccacttaacaactgtgtcttttgtaaggctgatgagttgttcaca
gaatacgagtcgaagctcttttctcatactgttaaaggccaaatggcaatatttgaagag
atgatagaagatgaagaagggcttgttgatgaccgtttgcccaccacaagtagaggactg
tgggcgaccagtgaaactgaacgtgccttgaaagctattctctcctttgccaaagctcac
cgaatggatgctagactaactgaagaaggcagcatatttctggaactttatgaagcatgg
aaaaaggaatataagttacttcatgaatattggatggtactgagggatcatgtgtctgct
attgacgaactggcaatggctacagaacggctcagagtgcgtcatcctgatgaaccaaaa
ccaaatccaccagttctctacatcatagaaccacatgaggtagagcaaaatcgagtgaaa
cttttgaatgacaaggcagttgccaaatcacaacttcaaaagaaactaggacaacttctg
tatctcactaatctggagaagtctcaggataaaactactgggggagttaacccagaacca
tgtccgatctgtgcacgtcaactaggaaaacagtgggcagtgctgacatgtggacattgt
ttttgcaatgagtgtgtagctatcatcatagaacagtacagcgttggcacccgccggagt
tcaattaaatgtgccatttgcaggcagacgacatctcataaagaaatatcgtatgtcttc
actgcagaaactgcaaatcaggaggatgatattcctgtaaag
DBGET
integrated database retrieval system
