Aquarana catesbeiana (American bullfrog): 141103625
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Entry
141103625 CDS
T11018
Symbol
RC3H1
Name
(RefSeq) roquin-1 isoform X1
KO
K15690
RING finger and CCCH-type zinc finger domain-containing protein
Organism
acat Aquarana catesbeiana (American bullfrog)
Brite
KEGG Orthology (KO) [BR:
acat00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
acat03000
]
141103625 (RC3H1)
04121 Ubiquitin system [BR:
acat04121
]
141103625 (RC3H1)
Transcription factors [BR:
acat03000
]
Eukaryotic type
Zinc finger
Cys3His zinc factors
141103625 (RC3H1)
Ubiquitin system [BR:
acat04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Other single Ring-finger type E3
141103625 (RC3H1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Roquin_1_2-like_ROQ
ROQ_II
zf-RING_5
zf-RING_UBOX
zf-RING_2
zf-C3HC4_4
Prok-RING_4
zf-CCCH
zf-C3HC4_3
zf-C3HC4
zf-CCCH_UNK
FYVE
zf-C3HC4_2
zf_CCCH_4
zf-CCCH_4
PaaA_PaaC
Vesi_VP2
Baculo_IE-1
zf-RING_4
zf-RING_10
zf-RING_6
Motif
Other DBs
NCBI-GeneID:
141103625
NCBI-ProteinID:
XP_073449529
LinkDB
All DBs
Position
LG07:complement(286458993..286591887)
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AA seq
1135 aa
AA seq
DB search
MPVQAPQWTDFLSCPICTQTFDETIRKPISLGCGHTVCKMCLNKLHRKACPFDQTTINTD
IELLPVNSALLQLVGAQVPEQQPITLCSGAEDTKHYEEARKCVEELALYLKPLSTARGVG
LNSTTQSVLSRPMQRKLVTLVHCQLVEEEGRIRAMRAARSLGERTVTELILQHQNPQQLS
SNLWAAVRARGCQFLGPAMQEEALKLVLLALEDGSALSRKVLVLFVVQRLEPRFPQASKT
SIGHVVQLLYRASCFKVTKRDEDSSLMQLKEEFRTYEALRREHDSQIVQIAMEAGLRIAP
DQWSSLLYGDQSHKSHMQSIIDKLQTPASFAQSVQELTIALQRTGDPANLNRLRPHLELL
ANIDPSPDAPPPTWEQLENGLVAVKTVVHGLVDYIQNHSKKGTDQQQVSEARSYCMIQPP
QHSKYKTYMCRDMKQRGGCPRGASCTFAHSQEELEKFRKMNKRLVPRRPLSASLGQLNEV
GLPTGAIHSDEGPMDLPSRKQAGLPNGIVSGSSVTQLISRGTDSGYESVLKPVKLDHLSN
SAPGSPPELLDSVPKSSISSLPVSSHPPPQRVSGDLPPLPVSKQIQMVPRGSQIYASPQA
DMFYPDPRGGGPPFEPVTYPPNVYYPPQPVSRFVRPQPSAPESTPTYLDQYPPYLQDRVV
STQYGTPTQQYSPMNQPMYPAHYDTRRVYPSTPQSYQREEMVRASPVPLDMPPNAGSPYV
PETRDRYQPVEGYYPVAAHSGQIRPSYNREHYGRLPPQHPSQPHPSLDDLHRRRKEIMAQ
LEERKVISPPPFAPSPTLTHPFHQEEYLDEELKISGKYKGNDYSQYSPWSCDTIGSYIGS
KDAKPKDVSAGGSVEVANVDSKSLRDQRLELQRRATEAGEDDLIPFGDRPTVSRFGAISR
TSKALYQPSGPMQPALATQGVATKSSVSDYSLYSHNLGGPPYPPHQNPPSQGHLSERDRM
TKPPPTSEKQLRMELQQLNQQISQQTQMRGMEVPSNRLLVQRDPPALGGQQQPPPPPPAK
WSSMLSNEQLSLELHQVEREIGKRTRELSMEGHSMGVKSKPDVIKVENGQIEPQSKVLSH
DLPLFSSEVPNGSSLAQDITMLSGKTSSLTLSEDSQVGGDKTEALRTGINSSTAP
NT seq
3408 nt
NT seq
+upstream
nt +downstream
nt
atgcctgtacaagcgccacaatggaccgactttctgtcctgtcctatttgcacacagaca
ttcgacgaaaccatccggaagcccatcagcttgggttgtgggcacaccgtctgcaagatg
tgcctgaacaagcttcaccgcaaggcttgtccgtttgaccagaccaccataaacacagac
attgaactgctgcctgtcaactctgccttgctgcagctggtgggagctcaggtacctgag
cagcagcctatcactctgtgcagcggggctgaagacaccaaacactatgaggaggccaga
aagtgtgtggaagagctggcactttacctgaagcccctcagtactgcaaggggtgtcggt
ctaaatagcaccacccaaagcgtgctaagccgccccatgcagaggaaattggtgactctt
gttcattgtcagctggtggaagaagagggtcgtattcgagcaatgcgagcggctcgttca
ctgggcgagagaacggtcactgagcttatactgcaacatcagaacccccagcaactttcc
tccaacttgtgggcagcggttcgtgcccgtggctgtcaattcctcggtccagccatgcag
gaagaagccctcaagcttgtcctcctggccctggaagacggatctgcactctcccggaag
gttctggttttgtttgtggtgcaaagactggaaccgcgctttcctcaagcctcgaaaact
agcattgggcatgttgtccagttgttgtacagagcctcttgctttaaggtcacaaagcgt
gatgaagattcctccctgatgcagttaaaggaggagtttcgcacttatgaagcactgcgc
agagagcatgattctcagattgtgcagattgctatggaggctggcctgcgcattgctcct
gatcaatggtcctctcttttgtatggggatcagtctcacaaatcccatatgcaatccata
attgacaagttgcagaccccggcctcgtttgcgcagagtgtccaggaactgaccattgct
ctacaaaggactggagaccctgccaatctgaacagattacgtccccatctagagctgctg
gcaaatatagacccaagccccgatgctccacctccaacatgggaacaactagagaacggt
cttgtggccgtgaagactgttgttcatgggctggtggattacatccagaaccacagcaag
aaggggactgatcagcagcaggtgagcgaggcgcggagctactgcatgattcagcctcca
cagcacagcaagtacaagacctatatgtgcagagacatgaaacagaggggaggctgtccc
cgaggagctagctgcacctttgctcattcacaagaagagttagaaaagtttcgaaaaatg
aacaagcgcttggttcctcggcgcccactgagtgcctctcttggtcagctgaatgaggtt
gggctgcctaccggggctatacactcagacgagggtcctatggatctacctagtcggaaa
caagctggccttcccaatggcatagtgtctggaagctctgtgacacagctcatctcccgt
gggacagactctggctacgagtctgttctgaagccagtgaaactggatcatctgagcaac
agtgccccaggctcccctccagagctcctggactctgtccccaaatcttctatttcctct
ttacctgtcagctcacatccacctccacagcgcgtttctggtgatcttcccccattgcca
gtatctaaacagatccagatggtaccacgaggttcccagatttatgcttctccccaggcg
gatatgttttatcctgatccaaggggaggggggcctccatttgaacctgtaacctatcct
ccaaatgtttattacccgcctcagcctgtgtcgcgctttgtcagacctcagccatctgct
cctgagtccacccctacctacctcgaccagtaccctccctatttacaagacagagttgtt
agcacacagtatggaacccctacccaacaatattctccaatgaaccagcccatgtaccct
gcacactacgatacccgacgtgtgtacccttctactccccagtcctaccagagagaggaa
atggttcgggctagtcctgtaccactggacatgccacctaacgctggctctccttatgtt
cccgaaaccagagatcgttaccagcctgtagagggctactaccccgttgcagcgcattcg
ggacagataagaccatcttataacagggaacactacggtcgtttgcctccccagcatcca
tcacagcctcaccccagcctggatgatcttcaccgccgccgaaaggagatcatggctcaa
ctagaagagagaaaagtgatttctcccccaccatttgctccttcacccacgctgacacac
cctttccatcaagaagagtaccttgatgaagaactaaaaatctctgggaagtacaaaggg
aatgattacagccagtattcaccctggtcctgtgacacaatcggttcctacattggaagc
aaagatgccaaacccaaagacgtttctgctggaggcagtgtcgaagtagcaaatgttgac
agcaaatccttgagggatcagcgccttgagctgcaacgcagagccactgaagcaggagag
gacgatctaattccgtttggcgaccggcctacagtatctcgttttggtgccatttctcgc
acctccaaggccttgtaccagccttcaggccctatgcagccagcattggcaactcaaggt
gtggcgacaaaatccagcgtttctgattacagtctgtatagtcacaacctgggaggccct
ccttacccaccccatcaaaaccctccttctcagggacatttgagtgagagagatcggatg
actaagcctccgcctacatctgagaagcagctcaggatggagttacagcagctgaaccag
cagattagccagcagacccagatgagaggaatggaggtccctagtaaccgtctgctagta
cagagagacccccctgcgctaggaggtcagcagcagccacccccacctccaccagctaag
tggtccagcatgttgtccaatgaacaactaagcctcgagctacatcaggtggagcgtgag
attgggaagagaacacgtgaacttagtatggagggtcactctatgggtgtgaagagtaaa
ccagatgtcatcaaagttgagaatgggcaaatagagccacagagcaaggttctgtcgcat
gatctcccactattcagcagtgaggtgccaaatggatcaagcttggcccaagacatcacc
atgctttctggaaagacttcttcactaactctttcagaagattcccaagttggcggtgac
aaaaccgaggccctgagaactggcatcaactcctccacagctccgtag
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