Aquarana catesbeiana (American bullfrog): 141105912
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Entry
141105912 CDS
T11018
Symbol
PDCD11
Name
(RefSeq) protein RRP5 homolog
KO
K14792
rRNA biogenesis protein RRP5
Organism
acat Aquarana catesbeiana (American bullfrog)
Brite
KEGG Orthology (KO) [BR:
acat00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
acat03009
]
141105912 (PDCD11)
Ribosome biogenesis [BR:
acat03009
]
Eukaryotic type
90S particles
Other 90S particles
141105912 (PDCD11)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
S1_RRP5
S1
Spt6_S1
HAT_Syf1_CNRKL1_N
HAT_PRP39_C
OB_RRP5_4th
Suf
HAT_PRP39_N
HAT_Syf1_CNRKL1_C
TPR_14
OB_RRP5
TPR_19
TPR_15
DUF7017
TPR_12
ANAPC3
HAT_Syf1_M
Coatomer_E
ARM_TT21
DUF7589
PPR_2
ARM_TT21_C
TPR_CcmH_CycH
Motif
Other DBs
NCBI-GeneID:
141105912
NCBI-ProteinID:
XP_073452222
LinkDB
All DBs
Position
LG08:complement(90023446..90118188)
Genome browser
AA seq
1788 aa
AA seq
DB search
MEECFPRGGTLKKSEETATKKRPREDDNLFFTSREEAEETGKKKKKKQLKETSKAAQHEK
GSFAKVKAVELLNYKNLRVGMLFLGCIKEVKDFELVISLPYNLTGFVQATNICEAYTKLL
NEQVEKEEPVEGLIPLPNLYSPGMLVRCAISNLETTSGGFNSIKLSLKPKLIHGDLAPSS
VRKGMYLTGLVSSVEDHGYLIDLGIAGTKAFLPRHKAEVYINQTSKGPALRVGQYLDCVI
EEVKNDGRILRLSVSQSDVTAAIATDEQKWTMNNLLPGLVVKAQIQKIFHDHITVSFLSS
YTGIVDFLHLEPKKANLYQSDQLVKACILWIDKSSKTIRLTLRKTLLQPGRLMKQLSSNW
LGTVHEKCTVKALYKHAGAMFELDGETVAFAFKYHLISKLSSDLNKYKEGTVHTGRVVGF
SPMEETLLLSLKETVIEEPFWKHEDIHAGQFLEGTVEKIATEGIIVNITQRISGLIPNLH
MADITLNHPEKRYTPGKNIKCRVLNVDPSARKLILTRKKTMINSKLPIIASFHDAKPGMI
THGFIWAVKDFGCIVKFYNDVHGLAPARELSSHYIPVIQEAFYKGQVVKVRVLECNHEKE
TLLLSFKIIEENENGEQDPNRGRRTHSHWQEPGKIVDVRIASKTDTELNVFILPEESPAV
LPKVHLSDHVANCEILFHCLKEGDELSQVMCLNTSKGQTILTRKTALISCVEKGSCVKDF
SEVQVGMFLTGFVRNIMSYGVFVEFLHGLVGLVPISEVSDKFVTEIGAHFVQGQTVVAKV
TNIDEQKKRFLLTLKMSECAPDDCSADGFSLIGQCCSELQFCKSLMKKNEELDEGETIYS
VVPGKNLVLVVEKLEDNGSVLFSTSQVPGAKKISAVQHKEQEKPLTLGQKVKAVILHVDI
LKAHVHVSMEEALLKKCKESFAEKSVHSAVVQHLSEEFAVASLKDTSKLVAVPLKRHFND
TFRFESERLNVGQKISVTLSSVDADQHGIHLAVQNTSSGREKVKMPLDFTKRKPLIGEVI
TGTVKSIKPISVLVSITDKLTGTIHASQIMENVVAGAQPTSKLRPKQNLTCRVIGGRDIK
THKFLPITHPHLMQSVLELSVLPSLLNTEVKVEKQKPLNTYSSGDMVTCYVVKYNKEKQC
LEVEISPGIRGTVEHLLLSSSAKVLKRPEKHFRPGQALSATVVDVEDSRKKLSLSLIDLD
ALTEGCITFGCVKSVIPSTGLQITIPFGKTGRASFFQLNDCYDEISLEKFTAGMLVRCCI
LSVGNKIDLSLRESRLNPGSVSKQIDEDLSSIDCLKEGQLIKGFVSAVTEKGVFFRISSS
IDGHILFKNVTSYYVKEIEMYKEHIPEGKLLTAKIISIDKEENRIELSLLSNDTGNPDVI
PESAGFSLRRKKGEKKRRRTNSESEVKRSKRKKSQESQDDEDSGVEVHYREQNTENEEKK
KASNKPPAPRLQVSSGFSWDVSLNTLKTSLIDGKESSSDSEEDEEEEHPKIQKTKSNQKK
QGAEKRPAGKEAKDPSQLPQSINEFERLVLSSPNISANWIQYMDFHLQATELEQARAVAE
RALQTIYFREEQEKLNVWVAMLNMENTYGTEETLLKVFGRAVQYNDPLKAFQHLVEIYIK
SEKYKEADELFNTMIKRFKQEKSVYWKYATFLLKQGQSEAAHRLLQRALKCLPEKEHVEV
ISKFAQLEFQLGDPVRAKALFESTLSSYTKRTDIWSVYIDMMVKHGNQKEIRDIFERVIH
LSLAAKRIKFFFKRYLEYEKKHGNEKTVQAVKEKALQYVESKSSVGTS
NT seq
5367 nt
NT seq
+upstream
nt +downstream
nt
atggaggagtgtttcccccgtggggggaccctaaagaagtctgaggaaactgccactaaa
aagaggccaagagaagatgacaacctgttttttacctcccgggaagaagcagaagaaact
ggtaagaagaaaaagaagaaacaactgaaagaaacttcaaaggcagcccagcatgaaaag
ggctcatttgcaaaagtgaaagcagtggagctgctaaattataagaaccttcgtgttggg
atgttgtttcttggatgcatcaaagaggtgaaagattttgaactggttataagcttgcct
tataatctcacaggctttgtccaagcaacaaatatctgtgaggcctacacaaaattgctt
aatgaacaagtggaaaaagaggagcctgtggagggtctgattcctcttcctaacctgtat
tcaccaggaatgctagtcagatgtgccatcagcaatttggagaccacgtctggtggtttc
aatagcatcaaattgtccttaaaaccaaaactcattcatggggatcttgctccatcttct
gtgcgcaaaggcatgtatctcaccggtcttgtgtctagtgtggaagaccatggctatctc
attgatttaggcattgctggaactaaagctttcctacctcgacataaggctgaagtgtat
ataaaccagacaagcaaaggacctgcactgagagtggggcaatatctggactgtgtgatt
gaagaggtgaagaatgatgggagaatcttacgtctgtcagtcagccagtctgatgtgact
gcagccattgccacagatgaacagaagtggactatgaataacctgctgccgggcttagtg
gtaaaagctcagattcaaaagatcttccatgaccacatcactgtatccttcttgtcatcc
tacactggaatagtggatttcttgcatttggaacctaaaaaagcaaatttgtaccaaagt
gaccagttggttaaagcttgcatcctgtggattgacaagtcttccaagaccatacgactg
acattacgtaagaccttgctgcaacccgggaggctgatgaagcaactgtctagtaactgg
cttggcacggttcatgagaagtgtacagtgaaggcactgtataagcatgcgggagcaatg
tttgagctggatggggaaacagtggcttttgcgtttaaataccatctaatttccaagttg
tcaagtgatctgaacaaatataaagaagggactgtccacactggacgggtggtggggttt
agcccaatggaggagacccttctactttctttaaaggagacagtcattgaagaacctttt
tggaaacatgaggatatacatgctggacaatttctagagggaactgttgaaaagattgca
actgaaggaataattgtgaatatcacccaacgcatcagtggtctcataccaaatctccac
atggcggatatcaccttgaaccatcctgagaagagatatactcctgggaaaaatatcaaa
tgcagagttctaaatgtggatccatcagccagaaaactgattcttacccgaaagaaaacc
atgatcaattcgaaattgccaataattgccagttttcatgatgcaaagcctggcatgatc
actcatggatttatctgggcagtgaaagattttggatgcattgttaagttctataatgat
gtccatggacttgcaccagctcgagagttaagttcgcattatatcccagtaatacaagag
gccttttataagggacaggtggttaaggtaagggtgctggagtgtaaccatgaaaaggag
acattgctactgtccttcaagattatcgaagaaaatgaaaatggagaacaggatccaaat
aggggaagaagaacacattcacactggcaagaacctggaaagatagtggatgtgagaatt
gcaagcaagactgatacagagctgaatgtattcattttgcctgaggagagccctgcagta
cttccgaaagttcatctatctgatcatgtggcaaactgtgagatcctcttccactgtctg
aaggagggtgatgagctgtctcaagtgatgtgcctgaacacctccaaagggcaaactata
ttaaccagaaaaactgcattaatttcatgcgtagagaaggggtcatgtgtaaaagatttc
tctgaagttcaagttggaatgtttctcactggatttgttagaaatattatgtcgtatgga
gtatttgtggaattcttgcatgggctggtcggactggtccccatctcggaagtcagtgac
aagtttgtgactgaaatcggtgcccattttgtgcaagggcagacggttgttgcaaaagta
acaaacattgatgagcaaaaaaaacgcttcctgttgactctaaagatgtcagaatgtgcc
cctgatgactgctcagctgatggattctccctgatcggccagtgttgcagtgagctgcag
ttctgtaagagcctaatgaaaaaaaatgaagaactggatgagggcgagacaatctattct
gtagtaccagggaaaaacttggtccttgttgttgaaaaactggaagataatggttcagtt
ctgttcagcactagccaagtccctggagcaaagaaaatatcagctgtgcaacataaggaa
caagaaaaacctttaactctgggacagaaagtaaaggctgtgattctacatgttgatata
ttaaaagctcacgttcatgtttccatggaagaagctttactaaagaaatgtaaagagagt
tttgcagaaaaatccgtgcactctgcagtcgtacagcatttgtcagaagaatttgctgtg
gcgtctttgaaagatacttcaaagctggtggctgtcccactcaaacgacactttaacgac
actttccggtttgaatcggaaaggctaaatgtaggacagaagatctctgtgacgttatcc
tcagtggatgctgatcaacatggaatccatttggcagtgcagaataccagctcaggaagg
gaaaaagtcaagatgccactggattttacgaaaagaaagccacttattggagaagtgatc
actgggactgtgaaaagcatcaagcccatcagcgtgttggtgtctattacagataaacta
acgggtaccatccacgcctctcagatcatggagaatgtggttgcaggcgcccagccaaca
tccaagcttaggcccaagcagaatttgacttgtcgtgtgataggaggacgagatatcaag
acacacaagttccttcctattactcacccacacctgatgcagtctgttcttgaactcagt
gttcttcccagtcttttgaatactgaagtgaaagttgaaaaacaaaaacccctgaatacg
tactcatcgggtgatatggtgacctgctatgtagtcaagtataacaaagagaagcaatgt
ctggaggtagagatctctcccggtattcgtggcacagtagaacatctgcttctgtcatct
tctgctaaggtcttaaagcgtccagagaaacatttcagaccaggccaggcgctgtctgcc
actgtggttgacgtagaggactctcgtaaaaagctctctttgtcattaatagaccttgat
gctctgacggagggctgtatcacttttggctgcgtaaagagtgtaattcccagtacaggc
ctacagataaccataccatttggaaagaccggaagagctagtttcttccaattaaatgac
tgctatgatgagatctccttggagaagttcaccgctggaatgcttgtaaggtgttgcata
ctctctgttggaaataaaatagacctgtccctaagagaatctcgattaaatcctggaagt
gtcagcaaacagatagatgaagacctctcgtctattgactgtttgaaggaagggcagctc
attaaaggttttgtcagtgcagttacagagaaaggtgtatttttcaggatatccagttcg
attgatggccatattctgtttaagaatgtcacctcttattatgttaaagagatagagatg
tataaggaacacattcccgaaggaaagttgcttactgccaaaattatttctatagataaa
gaggagaatcgcatagagctgtcacttctttctaatgatactggaaatcctgatgttatc
ccagagtctgctggcttcagcttaaggaggaagaagggtgaaaaaaaaaggagacgaaca
aactctgaaagtgaagtcaagaggtctaaaaggaagaaatcccaagagtcccaggatgat
gaagacagcggagttgaggttcattatcgagaacagaatacagaaaatgaggaaaagaaa
aaagctagcaataagcctccagcaccccgactgcaggtttcctccggcttttcttgggac
gtcagcctgaatactctcaaaacttctttaattgatggaaaggagagcagttcagacagt
gaggaggatgaggaggaggagcaccccaagatacagaaaactaagagcaaccagaaaaaa
cagggagcggagaagagaccagctggaaaagaggccaaggatccaagtcagctaccgcag
tcaattaatgaatttgagcgccttgtcctcagttcacctaatatctctgctaactggatt
cagtacatggatttccacctccaggccactgagctggagcaagcacgggctgtggcagaa
agagccctgcagactatttacttcagggaggagcaagagaagctgaatgtatgggtagcc
atgctgaatatggagaatacatatggcacagaagagactttgctgaaggtgttcggacga
gctgttcaatacaatgatccattgaaagcattccagcacttagtggagatttacatcaag
tcagaaaagtataaggaggctgatgaattgttcaacacgatgataaagcgtttcaaacag
gaaaagtctgtgtattggaaatatgccacatttcttcttaagcaaggccagtctgaggct
gctcatcgcttactgcagcgggcactaaagtgtcttccagaaaaagagcatgttgaggta
atttcaaagtttgctcagttagagttccaactgggtgatcctgtacgagccaaggctttg
tttgaaagcacactgagcagctataccaagcgaaccgacatctggtctgtatatatcgat
atgatggtaaagcatggcaatcaaaaggaaatcagagatatatttgagcgagttatccac
cttagtttagcagcaaaaaggatcaaatttttcttcaagcgttatctggaatatgagaag
aaacatggcaatgagaagaccgttcaagctgtgaaggagaaggctctgcaatatgttgaa
tctaagagttctgtgggcacaagctag
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integrated database retrieval system
