Aquarana catesbeiana (American bullfrog): 141105990
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Entry
141105990 CDS
T11018
Symbol
UPF1
Name
(RefSeq) regulator of nonsense transcripts 1
KO
K14326
regulator of nonsense transcripts 1 [EC:
5.6.2.5
5.6.2.3
]
Organism
acat Aquarana catesbeiana (American bullfrog)
Pathway
acat03013
Nucleocytoplasmic transport
acat03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
acat00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
141105990 (UPF1)
03015 mRNA surveillance pathway
141105990 (UPF1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
acat03019
]
141105990 (UPF1)
Enzymes [BR:
acat01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
141105990 (UPF1)
5.6.2.5 RNA 5'-3' helicase
141105990 (UPF1)
Messenger RNA biogenesis [BR:
acat03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
141105990 (UPF1)
mRNA cycle factors
Common to processing body (P body) and stress granule
141105990 (UPF1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UPF1_Zn_bind
AAA_12
AAA_11
UPF1_1B_dom
AAA_30
AAA_19
ResIII
SLFN-g3_helicase
NPHP3_N
ATPase
nSTAND3
NAT10_TcmA_helicase
DEAD
UvrD-helicase
SRP54
AAA_16
UvrD_C_2
AAA_22
Motif
Other DBs
NCBI-GeneID:
141105990
NCBI-ProteinID:
XP_073452402
LinkDB
All DBs
Position
LG01:complement(559423735..559593440)
Genome browser
AA seq
1100 aa
AA seq
DB search
MSVEAYGPSSQTLTFLDTEEAELLGADTQGSEFEFTDFTLPSQTQTQGQTQSQLDGQVNG
PEGILQNGTVDDGVGKTSQLLGELNFEEDEEDTYYTKDLPLHACSYCGIHDPACVVYCNT
SKKWFCNGRGNTSGSHIVNHLVRAKCKEVTLHKDGPLGETVLECYNCGCRNVFLLGFIPA
KADSVVVLLCRQPCASQSSLKDINWDSSQWQPLIQDRCFLSWLVKIPSEQEQLRARQITA
QQINKLEELWKENPSATLEDLEKPGVDEEPQHVLLRYEDAYQYQNIFGPLVKLEADYDKK
LKESQTQDNITVRWDLGLNKKRIAYFTLPKTDSDMRLMQGDEICLRYKGDLAPLWKGIGH
VIKVPDNYGDEIAIELRSSVGAPVEVTHNFQVDFVWKSTSFDRMQSALKTFAVDETSVSG
YIYHKLLGHEVEDVIIKCQLPKRFTAQGLPDLNHSQVYAVKTVLQRPLSLIQGPPGTGKT
VTSATIVYHLARQGNGPVLVCAPSNIAVDQLTEKIHQTGLKVVRLCAKSREAIDSPVSFL
ALHNQIRNMESMPELQKLQQLKDETGELSSADEKRYRALKRTAERELLMNADVICCTCVG
AGDPRLAKMQFRSILIDESTQATEPECMVPVVLGAKQLILVGDHCQLGPVVMCKKAAKAG
LSQSLFERLVVLGIRPIRLQVQYRMHPALSAFPSNIFYEGSLQNGVTAADRVKKGFDFQW
PQPDKPMFFYVTQGQEEIASSGTSYLNRTEAANVEKITTKLLKAGAKPDQIGIITPYEGQ
RSYLVQYMQFSGSLHTKLYQEVEIASVDAFQGREKDFIILSCVRANEHQGIGFLNDPRRL
NVALTRARYGVIIVGNPKALSKQPLWNHLLNYYKEQKVLVEGPLNNLRESLMQFSKPRKL
VNTINPGARFMTTAMYDAREAIIPGSVYDRSSQARPSNMYFQTHDQIGMISSGPSHVPAM
NIPIPFNLVMPPMPPPGYFGQANGPTAGRGMPKGKATRGGRQKQRGIGLQGMSQGNMPNS
QASQDVVSQPFSQGPLTQGYISMSQPSQMSQPGLSQPELSQDSYLGDEFKSQIDVALSQD
STYQGERAYQHGGVTGLSQY
NT seq
3303 nt
NT seq
+upstream
nt +downstream
nt
atgagcgtggaggcgtacgggcccagctcgcagaccctcacattccttgacacggaggag
gccgagctgctcggggccgacactcagggctctgagttcgagtttaccgacttcaccctg
cccagccaaactcagacccaagggcagactcagagccagctggacggacaggtcaatggt
cctgaggggatactacagaatggcacagtagatgatggggtgggaaaaacaagccagttg
ctgggtgagctaaattttgaagaagatgaagaagatacatattatacaaaagatctccct
ttacatgcttgcagctactgtggtattcatgatcctgcttgtgtggtctactgtaacaca
agtaaaaagtggttctgcaatggacgtggaaacacctctggaagccacattgtaaaccat
ctggtcagagcaaagtgtaaagaagttactttgcacaaggatggacctctgggagaaacg
gtgttggaatgctacaactgtggttgcagaaatgtttttcttcttggatttattcctgca
aaagctgattcagtggttgtgttgctgtgcaggcagccctgtgctagtcaaagcagcttg
aaggatattaactgggatagctctcagtggcagccgcttatacaagatcggtgcttcctt
tcctggctggtgaagatcccatctgaacaagagcagctgagagctcgccaaattacagct
cagcaaataaacaagctagaggagctctggaaggaaaacccttctgcaaccctagaggat
ctggaaaaacctggtgttgatgaagagcctcagcacgttctgcttagatatgaggatgcc
tatcagtaccaaaatatatttggaccgcttgtgaaacttgaggccgattatgacaaaaag
ctgaaggagtcccagactcaagataacattacagttcgatgggaccttggccttaacaag
aaaagaattgcttacttcactttgccaaaaacggattctgacatgcgtttaatgcaaggg
gatgaaatatgtttgcggtacaaaggtgaccttgctcctttgtggaaagggattggacat
gtaataaaggtcccagacaattatggtgatgaaattgccattgaattgagaagcagcgtt
ggagcaccagtggaagttactcacaattttcaggtggattttgtttggaagtcaacatct
tttgacagaatgcagagtgctttaaagacctttgctgttgatgaaacgtcagtttcgggg
tacatatatcataagctgcttggccacgaggtggaagatgtaattatcaaatgccagctt
cccaagagatttacagcacaaggactcccagatctgaaccactcacaggtttatgcagtg
aagactgttctgcaacgccctctcagtcttattcaaggtcctcctggtactggaaagact
gtaacatctgctacaattgtgtaccaccttgctagacaaggaaatggcccggtcttggtc
tgtgccccaagcaacattgctgtggatcagctgacagagaagattcatcagactggtctc
aaagttgttcggctttgtgcaaaaagtcgtgaagcaattgattctccagtttctttcttg
gcattgcataatcaaattcgtaatatggaaagcatgccagagctacaaaagttgcagcag
cttaaagatgagactggggaactttcttccgctgatgagaaacgataccgagcccttaaa
agaacagctgaaagagagctgcttatgaatgcggatgtgatttgctgtacctgtgtgggt
gccggtgatcctaggcttgcaaaaatgcagttccgttcaattctaattgatgaaagtact
caagccacagagccagaatgcatggtgccagttgttcttggagcaaagcagctaattttg
gtgggagatcattgtcagcttggacctgttgtgatgtgtaaaaaagctgctaaggctggc
ctgtcccagtctttgtttgagagacttgtggtcctgggaatcagaccaattcgcctgcag
gttcagtatcgaatgcaccctgcactgagtgcttttccatcaaacatcttctatgaaggc
tccctccagaatggcgtcactgcagcggaccgtgtgaagaaaggttttgacttccaatgg
ccgcagccggacaagcccatgtttttttatgtaactcagggacaggaagaaattgcaagt
tcaggcacttcctatttgaataggactgaagctgctaatgtggagaaaatcaccacaaaa
cttctgaaggcgggggccaagccggatcagatagggataattactccttatgaaggccag
aggtcctacttagtgcagtacatgcagttcagtggatccttgcatactaaactatatcag
gaagtggaaattgccagtgttgatgcatttcaaggtcgagagaaggactttatcattctg
tcctgtgtaagagctaacgagcaccagggcattggatttttaaatgatccccgtcgtctg
aatgtggctttgaccagagcaaggtatggtgtaattattgtgggcaacccaaaagcatta
tcaaagcagcctctatggaatcatctattaaattattacaaagagcagaaagtcctagtg
gagggacctctgaacaatctccgggagagtctaatgcagttcagtaaaccacgcaaactt
gtaaacaccattaatcctggtgcacgctttatgacaactgccatgtatgatgctcgagaa
gctataattcctgggtctgtttatgatcgaagcagtcaagctcgaccctcaaacatgtat
tttcaaacacatgatcagataggcatgatcagttcgggacccagccatgtacctgccatg
aacattcctataccgttcaatctggtcatgcctccaatgcctccaccgggctactttggt
caagccaatggaccaactgcaggtcggggtatgcctaaaggaaaggcaacccgtggtggg
cgccagaaacagagaggcatagggcttcagggcatgagccagggaaacatgcccaacagc
caagccagtcaggatgttgtatctcagccgttctctcaaggccctctaacacagggttat
atatccatgagccagccttcacaaatgagtcagccaggactctcccagccagaattatcg
caggatagctaccttggtgatgaatttaagtcacaaattgatgttgcgttatcgcaggat
tctacttaccagggtgaacgtgcatatcaacatggaggtgtgactgggctgtcacagtac
taa
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