Aquarana catesbeiana (American bullfrog): 141107585
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Entry
141107585 CDS
T11018
Symbol
SKIC2
Name
(RefSeq) superkiller complex protein 2
KO
K12599
antiviral helicase SKI2 [EC:
5.6.2.6
]
Organism
acat Aquarana catesbeiana (American bullfrog)
Pathway
acat03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
acat00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
141107585 (SKIC2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
acat03019
]
141107585 (SKIC2)
Enzymes [BR:
acat01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
141107585 (SKIC2)
Messenger RNA biogenesis [BR:
acat03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
141107585 (SKIC2)
mRNA degradation factors
3'-5' decay
Ski complex
141107585 (SKIC2)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DSHCT
Ski2_N
DEAD
MTR4_beta-barrel
Helicase_C
DEXQc_Suv3
MTR4-like_stalk
ResIII
DUF3516
nSTAND3
Motif
Other DBs
NCBI-GeneID:
141107585
NCBI-ProteinID:
XP_073454530
LinkDB
All DBs
Position
LG09:complement(46452700..46550853)
Genome browser
AA seq
1246 aa
AA seq
DB search
MNKLDLPAGDPLDLPFSILEVGIAGRLELITKPLPSNGPSFPLSTIPNGLPPYDVDLSSE
VIQKYLSDPEWLSVHDFDRSHRSWPRTKDVSSLFHMDLSAPQTDISMERNSATGELRRIS
EASANHIGLSAQNSLSLRRPPGPPSQSVKGSTSNFPFWPGGMDEPTLEQMKAISEEDEAL
DFEKDLLSAPPGWKNGMNFKQLDGLKPPGVLSLANLLGTLEDFTLADSSEDEDEAKIKQK
PKADKTEGLHRTNSLEELGVEMKSSAAAPPPPASPVPESTQEQWAIPLSSLAPVDDFYKR
IPDLAFKHPFELDPFQKKAIQCLEDGSSVFIAAHTSAGKTVVAEYAIALSLKHMTRTIYT
SPIKALSNQKFRDFKITFGDVGLITGDVQLYTAAPCLIMTTEILRSMLYNGSDVVRDLEW
VIFDEVHYINDAERGVVWEEVLIMLPDHVNIILLSATVPNTVEFADWIGRIKKKKIYVIS
TTKRPVPLEHYLYTGNSQKTQNEFFLLQDASGTFQTKGYYAAVDAKKERSSKYSQTFGAK
YPHGGGAGHDKGTWLSLIQSLRKRDALPVVIFTFSRTRCEQNASALTTVDLCTAAERSEV
QTYYTKCLSRLRGSDRQLPQVLHMLDLLKRGIGIHHSGILPILKEVVEMLFSRGLVKILF
ATETFAMGVNMPARTVVFDSIRKHDGTNFRDLTPGEYIQMAGRAGRRGLDNTGMVIILCK
SAVPEMGDLHRTMLGKPTQLQSQFRLTYSMILNLLRVEALRVEDMMKRSFAESRTQKDTK
AHEQRIKVLTKTLGDMGEVECSGDLADLQDYFLTVQELVCTRETLQRKVVESMNGMKCLS
VGRIVIISTEYHSWVPGVILQVSSDASNRIYTTLVLCEKNRDGGAPSTEKDGKRAPCPDD
LLMGKVFRPEGPCDYKLLKLHASDILMITGKTLRVHGDKVLDDVARSQTPRFRNDPPGPA
VSGVTQELSRLADLPPGSLTSLCPINDLQLKELEVVDAVSRAKRLEAALREFTSPNSPRF
TYQYLRLEQRSQVLDELDRLRFLTSDQSLSLLPEYQQRINVLRTLQYIDDGGAVQLKGRV
ACEVSSHELLVTELVLDGTLSPLNPDEIAALLSCLVFQHKTQCEPKLTDTLKQGVKKVRE
LAERIALIQRECGLRESVEDYVSQYKFGLTEVVYEWARGMPFAEIMTLTDIQEGLIVRCV
QRLDEACRDVRSAARLVGDATLCAKMEAASQLIKRDIVFAASLYTQ
NT seq
3741 nt
NT seq
+upstream
nt +downstream
nt
atgaataaactagatcttccagctggagatccactggatctcccgttttccatcctggaa
gttggcatagcagggcgactggaactgatcacaaaacctctgccatcgaatggtccttct
ttcccgttatctacaattccgaatggtttacctccatacgacgtggatctgtcttctgaa
gtgatccagaaataccttagtgacccggaatggctttctgtccatgattttgaccggagc
cacaggtcctggcctcgtaccaaggatgtcagctccctgttccacatggacctcagtgct
ccgcagactgatatcagcatggagcgtaactctgctaccggagaactgcgtagaatcagc
gaggcctctgcaaaccacattggtctctcagcacagaattctctgtctctacgacgacct
ccgggtcccccttctcagtccgtcaagggcagcacttccaacttccctttttggccaggt
ggaatggatgaacccactcttgaacaaatgaaggccatcagtgaagaggatgaagccctg
gactttgaaaaagatctcttatctgctccccctggatggaaaaatggaatgaatttcaag
caattggatggattgaagcccccaggggttctttctcttgccaatctgctggggactctg
gaagatttcacgctggcagactccagtgaggatgaagatgaagccaaaataaaacagaaa
cccaaggcagacaagacagagggacttcacaggacgaatagcctggaagagctgggtgta
gagatgaagtcctctgctgctgcaccccctcccccagcctcgcctgttccagaatccact
caggaacaatgggccattccactcagcagcctcgcccccgtggatgatttctacaaacgt
attccagatctagcctttaagcatccatttgaactggaccccttccagaagaaagccatt
caatgtcttgaagatggttcttctgtcttcattgcagctcacacatctgctgggaagact
gtggtggcagaatatgccatagcattgtccctaaaacacatgaccagaaccatatacact
tcccccataaaggccttgtccaatcagaagtttcgagatttcaagatcacttttggagac
gttggcctgatcacgggagatgtccaactctatacagcagcaccgtgtcttattatgact
acagagatcttacgatctatgctgtacaacggttccgatgttgtccgagacttagaatgg
gtcatctttgacgaggtccattatatcaatgatgcagagcgaggcgtcgtatgggaggag
gtcctcatcatgttgccggaccacgtcaatattattctgctgagcgccacggtccccaac
accgtggagtttgcagactggatcgggaggataaagaagaagaagatctatgtgatcagt
accaccaagaggccggtgccgctggaacattatctgtacacggggaacagtcagaagacg
cagaatgagttcttcctgttgcaggatgcttctggaaccttccagaccaaaggctactat
gctgctgttgatgccaaaaaggagcgatcctctaaatattcccaaacgtttggagcaaaa
tacccgcatggcggtggagccgggcatgataaaggcacatggctgtctctgatccagtct
ctccggaagcgagatgccctcccagtggtgattttcaccttctcccgaacgcggtgcgag
cagaacgcctccgcactgaccacggtagatctgtgcacagctgcagagcggagcgaggtg
cagacgtactacaccaagtgcctgagccgcctgcgtggaagtgaccgccagctcccgcag
gtactgcacatgctggatttgttgaagagaggaattggtatccatcacagcggaatcctg
cccatcctgaaggaggtggtggagatgctgttcagccgcggactggttaagatcctgttt
gccacagagacgttcgccatgggagttaacatgccggctcgtacggtggtgttcgattca
atccgaaaacatgacggcaccaacttccgagacctgactccaggagaatatatacagatg
gccggccgtgctggacgtcgaggtttggacaatactggtatggtgataatattatgtaaa
tcagccgtaccggagatgggcgatttgcacaggacgatgctggggaagcccactcagtta
caatctcagtttcgactcacatactccatgatcctgaatcttctccgtgtcgaagcgctg
agagtggaggacatgatgaagagaagttttgcagaatccagaacacaaaaagacaccaag
gctcatgaacagcggataaaggtcctgaccaaaacactgggggacatgggggaagttgaa
tgctcaggggacctggccgacctgcaggactactttttgactgtacaggaactcgtttgt
accagagaaaccttacagagaaaggtggtagagtccatgaatggaatgaaatgcctgagt
gtgggtcgtatcgtcatcatcagcaccgaataccactcatgggtgcctggagtcatcctg
caggtgtcctcagatgccagcaataggatttacaccaccttggtgctgtgtgagaagaac
cgggatggtggagcgccctctacagagaaggatggcaagcgggcaccatgtcctgatgac
ctcttgatgggcaaagtgttcagacctgaaggtccatgcgactacaagcttctgaagctc
catgcctctgacattcttatgataaccgggaaaactctgagagtccatggtgataaagtg
ctggatgatgttgcaaggagccaaaccccacgattcaggaatgaccctccgggccctgca
gtatctggggtgactcaggagctatctcgccttgcagacttgcctccggggtcactgacc
tccttgtgccccatcaatgatctccagctgaaggagctggaagtggtggatgcagtcagc
cgggcaaagagacttgaagcagcactacgagagttcacctcccccaacagcccccgattt
acataccagtatctacgcctggagcagagatcgcaggtactggatgagctggatcgtctt
cgcttccttacctctgaccagtcgctgagcctcctgccagagtaccagcagagaatcaat
gtcctgcgcactctacagtacatagacgatggcggtgctgtacagctaaagggccgggtg
gcctgtgaggtcagcagtcatgagctgttggtgactgaactggttctggatgggaccctg
tctcctcttaaccctgatgagattgcagcattactctcatgtctggtctttcagcacaag
acgcagtgtgagccgaagctaacagacactttgaagcagggagtgaagaaggtgagagag
ctggctgaacgaattgcgctgattcagcgggaatgtggccttagggagtctgtggaggac
tatgtgtcgcagtacaagtttggcctgacggaggttgtgtatgaatgggcacgtggaatg
ccatttgcagaaatcatgaccctgacagacatccaggaaggccttattgtgcgctgcgta
cagcgactggacgaagcgtgtcgggatgtacgttctgccgcacggttggtgggagatgct
actctgtgcgccaagatggaggctgcctcacagctcatcaagagggatatagtgtttgct
gcgagcctgtacacccaatga
DBGET
integrated database retrieval system
