Aquarana catesbeiana (American bullfrog): 141107605
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Entry
141107605 CDS
T11018
Symbol
DDX39B
Name
(RefSeq) spliceosome RNA helicase DDX39B
KO
K12812
ATP-dependent RNA helicase UAP56/SUB2 [EC:
5.6.2.7
]
Organism
acat Aquarana catesbeiana (American bullfrog)
Pathway
acat03013
Nucleocytoplasmic transport
acat03015
mRNA surveillance pathway
acat03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
acat00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
141107605 (DDX39B)
09122 Translation
03013 Nucleocytoplasmic transport
141107605 (DDX39B)
03015 mRNA surveillance pathway
141107605 (DDX39B)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
acat03019
]
141107605 (DDX39B)
03041 Spliceosome [BR:
acat03041
]
141107605 (DDX39B)
Enzymes [BR:
acat01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
141107605 (DDX39B)
Messenger RNA biogenesis [BR:
acat03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
141107605 (DDX39B)
Spliceosome [BR:
acat03041
]
Complex C
Other components
EJC/TREX
141107605 (DDX39B)
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
141107605 (DDX39B)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
CMS1
Cas3-like_C_2
Motif
Other DBs
NCBI-GeneID:
141107605
NCBI-ProteinID:
XP_073454558
LinkDB
All DBs
Position
LG09:complement(49108931..49150467)
Genome browser
AA seq
428 aa
AA seq
DB search
MAETDVDNELLDYEDDEVDNQTGGDSQELPVKKEMKGSYVSIHSSGFRDFLLKPELLRAI
VDCGFEHPSEVQHECIPQAILGMDILCQAKSGMGKTAVFVLATLQQLEPVTGQISVLVMC
HTRELAFQISKEYERFSKYMPSVKVAVFFGGLAIKKDEEMLKKSCPHIVVGTPGRTLALA
RNKTLNLKHIKHFILDECDKMLEQLDMRRDVQEIFRMTPHEKQVMMFSATLSKEIRPVCR
KFMQDPMEIFVDDETKLTLHGLQQYYVKLKDNEKNRKLFDLLDLLEFNQVVIFVKSVQRC
IALAQLLVEQNFPAIAIHRGMQQEERLSRYQQFKDFQRRILVATNLFGRGMDIERVNIAF
NYDMPEDSDTYLHRVARAGRFGTKGLAITFVSDEQDAKILNEVQDRFEVNISELPDEIDI
SSYIEQTR
NT seq
1287 nt
NT seq
+upstream
nt +downstream
nt
atggcagaaacagacgtagacaatgagctgttggactacgaggacgatgaggtggataac
cagactgggggcgattcccaggagcttccggtcaagaaggagatgaaaggttcctatgtg
tcaatacacagctctggcttcagagatttcctcctgaaacctgaactacttcgtgccatt
gtggactgtggatttgaacatccatcagaagtacaacatgagtgcattccacaagccatc
ctgggcatggacattctctgccaggcaaagtctggcatgggaaaaactgcagtgtttgtc
ttggccacgctacaacagctggagcctgttacagggcagatctcagtgttagtcatgtgt
cacaccagagagctggcatttcagatcagcaaagagtatgaacgattctccaagtacatg
ccatctgtgaaggtggctgtgttttttggtggacttgcaatcaagaaggatgaggagatg
ttgaagaaaagctgcccacacattgtggtcgggactcccggccgaactttggcgctggca
agaaacaagaccctaaatctgaaacacattaaacacttcatccttgatgaatgcgacaag
atgctagagcaattagatatgcgcagagatgtgcaagaaatatttcgtatgactcctcat
gagaagcaggtcatgatgttcagcgctaccctgagcaaggagattcgcccagtttgcaga
aagttcatgcaagacccaatggaaatctttgtggatgacgagaccaagctgactcttcac
ggactccaacaatattacgtcaagctcaaggacaatgagaaaaaccgcaaactttttgat
cttctagatctattggagttcaaccaggtggtcatctttgtgaagtcagttcaacgatgc
attgctctggctcagctgttggtggaacagaacttcccagctattgctattcatcgcgga
atgcaacaggaggaaaggctttcccggtaccaacaattcaaggatttccagcgcaggatc
ctggttgccaccaatctttttggtcgtggcatggacattgagagagtaaacattgccttc
aattatgacatgccggaagactctgacacctacctgcacagggtggcacgtgctggtagg
tttgggacgaagggtctcgccatcacgtttgtatcggatgagcaggatgcaaaaatccta
aacgaggttcaagatcggtttgaggtcaacatcagcgaattgcctgatgaaattgacatc
tcttcgtacattgaacagacgcggtga
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