Aquarana catesbeiana (American bullfrog): 141108122
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Entry
141108122 CDS
T11018
Symbol
COL4A6
Name
(RefSeq) collagen alpha-6(IV) chain isoform X1
KO
K06237
collagen type IV alpha
Organism
acat Aquarana catesbeiana (American bullfrog)
Pathway
acat04382
Cornified envelope formation
acat04510
Focal adhesion
acat04512
ECM-receptor interaction
acat04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
acat00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
141108122 (COL4A6)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
141108122 (COL4A6)
09142 Cell motility
04820 Cytoskeleton in muscle cells
141108122 (COL4A6)
09150 Organismal Systems
09158 Development and regeneration
04382 Cornified envelope formation
141108122 (COL4A6)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
acat04147
]
141108122 (COL4A6)
00536 Glycosaminoglycan binding proteins [BR:
acat00536
]
141108122 (COL4A6)
Exosome [BR:
acat04147
]
Exosomal proteins
Exosomal proteins of other cancer cells
141108122 (COL4A6)
Glycosaminoglycan binding proteins [BR:
acat00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
141108122 (COL4A6)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
C4
Motif
Other DBs
NCBI-GeneID:
141108122
NCBI-ProteinID:
XP_073455483
LinkDB
All DBs
Position
LG09:168149951..168501865
Genome browser
AA seq
1704 aa
AA seq
DB search
MITRLTLLLLLAVCFAADPVQAGGKKNYQGPCAGRDCSGGCKCFPEKGARGRPGQLGAQG
PMGPPGFQGPTGVAGPKGERGTQGLPGPSGPKGDQGPMGVPGFQGTNGVPGHSGQPGHRG
LPGLDGCNGTIGDEGLPGSYGYSGPAGSPGFPGPKGQKGEPSYIRGGIKGPKGDDGANGA
DGLPGPRGPPGPAGLTGPAGPPGLPGPTGPPGFMGPKGNMGVGYQGEKGEKGDTGAQGDP
GPPASSGMEFSTFLKGIPGEPGERGDFGYSGTPGLPGPAGFNGQGEKGEKGIPGLPGGRG
FPGSDGFSGFPGEKGKTGPPGLTGLDGFKGVKGEQGDIGFPGAPVYINNGGSALPGLPGD
PGLPGFQGMPGEEGFTGPPGIPGPPGLPAFVRGRPGSPGFPGVRGFKGERGDPGRPAYGQ
KGVQGNMGPQGPPGPPGLPGLPGSGRSEELKKNGEPGKPGDKGTQGPPGRFGSKGFKGDA
GDCACGGIDNDRGRVGPPGPPGPPGSNGFTGFTGPSGDPGRRGSPGPPGSPGSSGGAGTP
GPKGEKGEPVYPSGRGVRGDPGAVGLRGAPGLPGRAGRDGLPGLPGRKGPPGEGGAGNPG
EKGFPGPLGQKGRRGESGLPGVGFPGLPGSRGLPGDPGLPGQDGRPGDLGPPGDCCCGDN
VGNGDLVTKGGLTLPCIIAGEPGDPGMPGDPGPQGPRGEKGFPGIPGLRGFDGGKGQPGS
PGLGGFPGPQGFTGPRGDEGPSGFPGLDGIDGVPGKSGRPGLPGFKGARGEVLGAEPGAA
GEPGRPGFIGDKGARGDPGFDGQRGLDGRPGLMGAKGEKGNSGFPGGPGSRGLPGFGGAA
GIKGRQGPMGDIGLPGSPGFPGAKGIPGNRGPPSPAGIKGSPGPNGDAGRPGDLGSPGPS
GPSARDGQPGFPGIKGDKGSPGLIGFPGMPGLPGLPGSSGFKGFDGSPGRNGLPGLEGRK
GEQGSRGDPGPRGPESIVDISTLIGEIGAPGRNGEPGFPGPRGDKGFPGLPGSPGLPGFP
GTPGREKGQRGDPGLPGTFGRPGSPGLRGSPGIIGFPGMPGMNGADGLPGSPGFAGSPGR
PGEKGDRGESLGRPGVPGPKGERGNPGNPGARGFNGFPGDAGPNGRPGSPGVKGMAGDFG
RPGQPGSPGFQGFPGSPGLVGTPGLPGSQGFPGPAGAPGVKGFPGLSGLDGLNGLPGTRG
LPGTPGLSEAGRQGTPGFPGPKGEKGSPNTVPGQPGFNGGKGNRGDPGFPGLPGPPGLPG
PPGATNAIPGFPGDPGPAGLDGEMGMPGRPGPRGPPGPASNQGDTGDPGFPGTPGRGGTK
GDPGFPGNPGSNGAPGVKGLRGDPGFIGSQGKEGPVGDSGYPGPKGEKGNQGFQGPTGRP
GPPPLDYFDPSFGTPGLPGINGFDGGPGDRGQQGPTGPPGSKGFPGRPGQMGRNGSPGQP
GIIGDAGEPGIPGPSGFEGSPGKQGTSGLPGMPGRSISVGYTLVKHSQAETIPQCPVGMN
RLWDGYSLLYVEGQEKAHNQDLGLAGSCLPRFSTMPFVYCNINEVCYYASRNDKSYWLST
SAPIPMMPVASTQIKNYISRCSVCEAPSQAVAVHSQDNTIPQCPDGWRSLWIGYSFLMHT
AAGAEGGGQSLVSPGSCLEDFRATPFIECNGARGTCHYFANKYSFWLTTVEETRQFVGAP
PSETLKSGQLRTRVSRCQVCMKNL
NT seq
5115 nt
NT seq
+upstream
nt +downstream
nt
atgatcacacggctgactctactgctgcttctcgctgtctgcttcgctgccgacccggta
caagcgggagggaagaagaactatcaggggccatgtgcaggacgagattgcagcgggggc
tgcaaatgctttccagagaaaggagcccggggtcgtccaggtcagcttggagctcaaggt
ccaatggggcccccaggattccaagggccaaccggagttgctggaccaaagggtgaaaga
ggaacccaaggattaccaggaccatctgggccaaagggcgaccagggtcctatgggagtt
ccagggttccaaggtaccaatggagttcctggtcatagtggacaaccgggtcaccggggt
ttgcctggactggatggttgtaatggcaccattggagatgaaggtttaccggggtcttat
ggttattctggcccagctggatcaccaggttttccaggtcccaaaggtcagaaaggtgaa
ccatcctatatacgaggtggaattaaaggacctaagggagatgatggagcaaacggcgct
gatgggcttcctggaccacgtgggccacctggacccgctggactgacaggcccagctgga
ccaccaggcttaccaggtccaactggtccacctggctttatggggccaaagggcaatatg
ggagttggttatcaaggagagaaaggagagaagggagacaccggtgctcagggtgaccca
ggacctccagcatccagtggaatggaattctcaactttcctaaaaggaatcccaggagaa
ccgggtgaaagaggtgactttggatattctggaacacctggactgcctgggccagctgga
tttaatggtcaaggagagaaaggggagaaaggcattcctggtcttccgggtggaaggggc
tttcctggatcagatggatttagtggattccctggtgaaaaggggaagactggccctcct
ggacttactggacttgatggattcaaaggagtgaagggtgaacaaggtgacatcggtttt
cctggggcccctgtgtatattaataatggtggatcagcacttccaggtttaccaggagat
ccgggccttcctgggtttcaaggtatgccaggagaggaaggcttcactggtccccccggt
attcctggcccccctgggttgccagcgtttgtaagaggtcgacctggtagtccaggcttt
ccaggtgttcggggattcaaaggggagagaggagatccaggtagaccagcttatggtcag
aaaggagtccagggaaatatgggtccacaaggaccacctggaccaccagggctcccagga
ctaccaggatcaggccgttctgaagaactaaagaaaaatggtgagcctggaaaaccaggg
gataagggtacacaaggtcctccagggagatttggatccaagggatttaaaggtgatgct
ggtgactgtgcttgtggaggcatagataatgatcgtggtagagtcggaccacctggacct
ccaggcccaccagggagcaatggttttacaggatttacaggacctagtggagacccagga
aggaggggttcaccgggcccacctggatctcctggctcttctggaggtgctggtactcca
ggacctaaaggagaaaaaggtgaacctgtttacccatcgggtcgtggagttcgcggagat
cctggagctgtaggacttagaggagcccctggacttccaggaagggcgggaagagatggt
ctcccaggtttaccaggtcgtaaaggaccccctggtgaaggtggagctggtaatcctggt
gagaagggattcccaggccccttaggccaaaaaggtcgtcgtggagaaagcgggcttcct
ggtgttggctttccaggtttacctggctcccgtggtcttcctggtgatcctgggctaccg
ggacaagatgggcggccaggtgatctaggaccacctggtgactgctgctgcggggacaat
gttggtaatggagacttagtcacaaagggagggctcactttaccatgcataattgctgga
gaaccaggtgacccaggaatgcccggtgacccaggacctcaaggacctagaggtgaaaaa
ggattccctggaatcccaggtctccgtggctttgatggtggtaaaggacaaccaggcagt
ccaggtcttggtggatttccaggaccacaaggctttacaggtccccgtggagacgaaggc
ccttctggatttcctggcttggatggcattgatggagttccaggcaagtcaggacgtcct
ggtttgcctggtttcaaaggagcacgtggtgaagtattgggagctgagcctggtgctgct
ggtgaacctggaagacctggattcataggagataagggagctcgtggagaccctggattt
gatgggcaaagaggcttagacggacgacctggactaatgggtgctaaaggtgaaaagggt
aattcaggatttccaggtggaccaggctccagaggtctgccaggatttggaggagcagct
ggcattaaggggagacaaggacctatgggagatattggactcccagggtcaccaggcttt
cctggagcaaagggcattcctggaaacagaggtcccccaagtccagctggtataaaaggt
agtccaggtcctaatggagatgcaggtcgacctggggatttaggatcgcctggaccatca
ggaccaagtgcccgagatggacagcctggctttccaggaattaaaggtgataaaggatcc
cctggtttgattggctttcctggtatgcctgggcttccgggtctccctggttccagtgga
tttaagggatttgatggatcacctggaagaaatggacttcctggacttgaagggcgaaag
ggggagcaaggtagccgaggtgatccaggcccacgaggtcctgaaagtattgtggatata
agcacactgattggagaaattggagcaccaggaaggaatggagaaccagggttcccaggc
cctcgaggtgataaaggtttccctggtctgcctgggtcacctggcctccctggattccca
ggaacaccaggaagagagaaaggtcaacgtggagatccagggctgcctggaacatttgga
agaccgggttctcctggacttagaggctcaccagggatcataggatttcctgggatgcca
ggaatgaatggtgcagatggattaccaggtagccctggttttgctggttcgcctggaaga
cctggtgaaaaaggtgaccgtggagaatctctagggaggccaggtgttccaggacccaag
ggagaacgtggaaatccagggaatccgggtgcaagaggctttaacggattcccaggagat
gctggaccaaatggaagacctggaagccctggagtaaaaggcatggctggagactttggc
cgtccagggcaaccaggatctcctgggtttcagggatttccaggaagcccagggttagta
ggaacacctggattacctggatcgcaaggattccccggacctgcaggagcccccggtgtt
aaaggcttccctggtttatctgggctggatggattaaacggcttgcctggcacaagagga
ttacctggcacacctggcttaagtgaagctggacggcagggtacacctggatttccaggt
cctaaaggtgaaaaaggatctcccaacacagtacctggacaacctggatttaatggtgga
aaaggcaatcgtggagatccaggctttcctggtctccctggacctcctggactacctggc
ccaccaggagcaaccaatgccatacctggatttcctggagaccctggaccagctggacta
gatggagagatgggaatgccaggacgccccggaccacgtggcccccctggtccagcctcc
aatcaaggagacacaggagatcctggattcccaggaacaccaggcagaggtggtacgaag
ggagatccgggtttccctggaaatcctggcagcaatggagctcctggagtgaagggttta
agaggtgatccaggtttcattgggagtcaaggaaaagagggccctgttggagattccgga
tatcctggacccaagggagaaaaagggaaccaaggttttcaaggtccgacaggacgtcca
ggtccacctcccttagattattttgatccttcttttggaactcccggactccctggaatc
aatggctttgatggtgggccaggtgatagaggtcaacagggaccaacaggacctcccggc
agcaaaggctttcctggtcgcccagggcagatgggaaggaatggatcaccaggtcagcca
ggaattattggtgatgctggtgaaccaggtattccagggccctcagggtttgaaggttct
ccgggaaaacagggcaccagtggattgcctggtatgcccggacggagtataagtgttggc
tataccttggtgaaacacagccaggctgaaacaattcctcagtgtccagtcggaatgaac
agactttgggatggctacagtttgctatatgtagaagggcaggaaaaggctcacaaccaa
gatctgggtcttgctggatcttgtctgcccagatttagcacaatgccttttgtgtactgt
aacatcaatgaggtctgctactatgccagccgaaatgacaagtcttactggctgtccacc
tcagctcctattcctatgatgcccgtggccagcactcagattaaaaactacatcagccgc
tgctctgtgtgtgaagctccttcccaggctgttgcagttcacagccaagacaacaccatc
ccacaatgtcctgatggctggaggagcctctggataggatattctttcctaatgcacaca
gctgcaggtgcagaaggtggcggccagtccttagtgtcccctggctcatgtctagaagac
ttccgggccactccattcatcgaatgcaatggcgctcgtggaacctgccactactttgca
aacaagtacagtttctggctgactactgtggaagaaacaagacagtttgtaggggctccc
ccctctgagacgctgaaatctgggcaacttcgaacacgtgtcagccgctgtcaggtgtgc
atgaagaacttgtag
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