Aquarana catesbeiana (American bullfrog): 141108332
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Entry
141108332 CDS
T11018
Symbol
PRPF4
Name
(RefSeq) U4/U6 small nuclear ribonucleoprotein Prp4 isoform X1
KO
K12662
U4/U6 small nuclear ribonucleoprotein PRP4
Organism
acat Aquarana catesbeiana (American bullfrog)
Pathway
acat03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
acat00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
141108332 (PRPF4)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
acat03041
]
141108332 (PRPF4)
Spliceosome [BR:
acat03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6 snRNP specific factors
141108332 (PRPF4)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40_Prp19
WD40
WD40_CDC20-Fz
WD40_WDHD1_1st
Beta-prop_CAF1B_HIR1
Beta-prop_EML_2
EIF3I
WDR55
Beta-prop_TEP1_2nd
Beta-prop_WDR75_1st
WD40_MABP1-WDR62_2nd
Beta-prop_WDR90_POC16_2nd
ANAPC4_WD40
WD40_MABP1-WDR62_1st
PRP4
Beta-prop_EML
Beta-prop_TEP1_C
WDR90_beta-prop_4th
Beta-prop_DCAF4
NBCH_WD40
Beta-prop_EIPR1
Beta-prop_RIG_2nd
Beta-prop_Vps41
Beta-prop_IFT122_1st
WD_LRWD1
Beta-prop_SCAP
Beta-prop_IFT140_1st
WD40_RFWD3
WD40_like
Beta-prop_WDR11_1st
Beta-prop_WDR35_TULP_N
Motif
Other DBs
NCBI-GeneID:
141108332
NCBI-ProteinID:
XP_073455946
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Position
LG09:complement(225300952..225346658)
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AA seq
506 aa
AA seq
DB search
MSDDEGVPAVKKSRIFYGSLAEKERERLHKGESSVGRTAVRAGIDAGNINVGFGESFDIE
EHISERQAEVLAEFERRKRARQINVSTDDSEVKAGLRALGEPITLFGEGPAERRERLRNV
LSIVGTDALKKTKKEEEKSKASSEEYQKTWYHEGPTTLKIARLWIAQYSLPRAMERLEAA
REYRNIPESTRTSQKQELHKSLGSLNNFCSQIGDDRPLSFCHFSPNSKLLATACWSGLCK
LWSVPDCTPVRTLRGHNTNVGAIVFHPKSTISVDEKDVNLASCAADGSVKLWNLESDEPV
ADIEGHTVRVARVTWHPSGRFLGTTCYDRSWRLWDLEAQEEILHQEGHSKGVYDLSFHID
GSLAGTGGLDSFGRVWDLRTGRCIMFLEGHLKEIYGISFSPNGYHIATGSGDNTCKVWDL
RQRRCIYTIPAHQNLISGVKFQPTNGQYLLTAAYDNTAKVWTHPLWSPLKTLAGHEGKVM
GVDISHDGELIATCSYDRTFKLWTAE
NT seq
1521 nt
NT seq
+upstream
nt +downstream
nt
atgtcagacgacgaaggtgtcccagcggtgaagaagtcccgtatcttttatggcagtttg
gcagaaaaggagagggagcgtcttcataagggagaatcgtcagtgggaaggacagcagtg
agagctgggatcgatgctgggaacattaacgtcgggtttggagagtcatttgacatagag
gagcacatcagtgagaggcaggcagaggttctggctgagtttgagaggaggaagcgggcc
agacagattaatgtgtccactgatgactctgaggtgaaggccggtctgagagcactcggg
gaaccaatcactctctttggagaaggcccagctgaaaggagagaaaggttgcgaaacgtt
ctctctattgttggcacagatgctttaaaaaagactaagaaagaagaagagaagtctaag
gcatcaagtgaagagtatcagaagacctggtatcacgagggtcctaccaccctgaaaatc
gcccgtctgtggattgcacaatactcccttccacgggcgatggagcgtctggaggctgcc
cgagaataccggaatatcccagaatccacaaggacctctcagaaacaagagctgcacaaa
tctctcggatcccttaacaacttttgcagccaaattggagatgacagacctttgtcattc
tgtcattttagtcctaattctaaactcctggctacagcatgttggagtggactttgcaaa
ctatggtctgttcccgactgtacccctgtacgcacattaagaggacataacacaaatgtg
ggagccattgtgttccaccccaaatccacaatatcagtggatgagaaagatgtgaatctg
gcttcctgtgctgcagatggatcagtaaaactatggaacctggagagcgatgaaccagtt
gcagacattgaaggtcacactgtgagagttgcaagagtaacatggcatccatctggacgt
ttcttggggaccacatgctatgaccgttcatggcgcttatgggatctggaagctcaggaa
gaaattctgcatcaggaaggacacagtaaaggagtgtatgacctttccttccacatagac
gggtctctggccggcaccggaggcctggattcttttggtcgagtttgggatctgaggact
ggtcgttgcatcatgttcctggaaggtcatctaaaagagatctatgggatcagcttctcc
cctaatggttatcacatagcaacgggcagcggtgataacacctgcaaagtgtgggatctg
cgtcagaggcgctgtatctatactatccctgctcatcagaacttgatcagtggagtgaag
ttccagcctaccaatggtcagtatctcctgacagcagcctatgataacacagccaaggtg
tggactcaccctctctggtctccattgaagaccctggctggacacgagggtaaggtgatg
ggggtggacatctcgcatgatggagagcttattgccacctgctcctatgatagaacgttt
aagctgtggacggcggagtga
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