Aquarana catesbeiana (American bullfrog): 141108434
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Entry
141108434 CDS
T11018
Symbol
HDAC6
Name
(RefSeq) histone deacetylase 6 isoform X1
KO
K11407
histone deacetylase 6 [EC:
3.5.1.98
]
Organism
acat Aquarana catesbeiana (American bullfrog)
Brite
KEGG Orthology (KO) [BR:
acat00001
]
09180 Brite Hierarchies
09181 Protein families: metabolism
01009 Protein phosphatases and associated proteins [BR:
acat01009
]
141108434 (HDAC6)
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
acat03019
]
141108434 (HDAC6)
04131 Membrane trafficking [BR:
acat04131
]
141108434 (HDAC6)
03036 Chromosome and associated proteins [BR:
acat03036
]
141108434 (HDAC6)
Enzymes [BR:
acat01000
]
3. Hydrolases
3.5 Acting on carbon-nitrogen bonds, other than peptide bonds
3.5.1 In linear amides
3.5.1.98 histone deacetylase
141108434 (HDAC6)
Protein phosphatases and associated proteins [BR:
acat01009
]
Protein serine/threonine phosphatases
Phosphoprotein phosphatases (PPPs)
Protein phosphatase-1
PP1-interacting proteins (PIPs)
141108434 (HDAC6)
Messenger RNA biogenesis [BR:
acat03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
Stress granule specific factors
141108434 (HDAC6)
Membrane trafficking [BR:
acat04131
]
Autophagy
Aggrephagy
Other aggrephagy associated proteins
141108434 (HDAC6)
Chromosome and associated proteins [BR:
acat03036
]
Eukaryotic type
Histone modification proteins
HDACs (histone deacetylases)
Class II HDACs
141108434 (HDAC6)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Hist_deacetyl
zf-UBP
Motif
Other DBs
NCBI-GeneID:
141108434
NCBI-ProteinID:
XP_073456135
LinkDB
All DBs
Position
LG09:240470386..240629952
Genome browser
AA seq
1466 aa
AA seq
DB search
MASPQERKSPAITTTKKPGKKSTSPQCPPTLQEVKKRGQRMRKTPERDICDQLDGLHLDR
DSPAVGTGLVYDDRMTLPYCLWDDKFPECPARILAIKEKLAQYGLVDRCVKVPAREASDA
DLLLVHSSDFVELMKSTQEMNQEKLKELSDRYDSVFLHPASFTTSCLAVGSVLQLVDKVV
KGEIRNGLALVRPPGHHAHTDKMNGYCMFNHLAIGAKYAQHNHGVKRVLIVDWDVHHGHG
TQFIFEHDPSVLYFSIHRYENGEFWPHLAESSSSAVGKERGERYNINVPWNKIAMKDADY
ITAFLHLLLPVAYEFQPHLVLVAAGYDSVVGDPKGEMAATPACFAHLTHLLMSLAEGRLI
LSLEGGYNLRSASEAVCASLKILLGDPCPSLPQPFAPCESGLESISDTFCVLRKFWRSLQ
EQDFTLTQEVKAQEISQTALEDTSEDTLTVVLDASMKEVMRKLPQQRTGLVYDERMMEHY
NMWDSGHPETPQRIARIYLRHKEMGLLDRCIRLCQRVATKDQLQMCHSLPYIEKIEKCSR
MKPRDLHRMGDEYNSIFINNKSYSSACLAAGSTFSVVEAVLKGKVQNGVCIVRPPGHHAE
PGAACGFCFFNNVALAAQYAQSLKNPSEPRLRVMILDWDIHHGNGTQHIFQEDDSVLYVS
IHRYDDGQFFPASEDAAHDRVGVGRGEGFNVNIAWNGGKMGDAEYLLAFHRIVMPIAYEF
NPQLVLISAGFDAARGDPLGGCRVSPEGYAHMTHLLMGLAGGKVVIVLEGGYNLISISDS
MSMCTRTLLGDPPPHLTDLHPPRPSALRAISNVLSVHNKYWRSLRLQVNPSPPSEVSKEV
CWTPQKQQPSKVMPMVESSSSPQLTTISPGKNIVETQCLQEFYLTGFKADDDSLNTRSEI
LEVKSQLSVAFRNESNDSVSSIDSHSVTYTTEESMETPSSENGQTLDSVGEPSPQKSTEM
AKHELKESSVNKDEVSNSLLSNLADVEKKEELVVEVQIPGQDSVHIGSNEGESLGTAIEV
QVLERTPDILMSDDRTESSVEELLRDLKLDNSKNTTPSITDNDSEPSGGARKKIFPLVQQ
VANSSEETSSQDTHLEENLLSEAAGKCSASCHQLDVESSLKYSGEIFTVTPLASCPHLES
VCELPPCGLNVTQLCAACGTDIENWVCLTCYVVLCGRYVSQHMMSHGVSSGHNLVLSFSD
LSVWCYGCDSYIHNEVLIPAKQSAYYSRGQNSVHLGSNKSKSLGTVIEVQVLERAPDILM
SDDRRESSVNELLRDVKLEDSKNTSTTSISDGDREPAGEARKKIFPVVQQVADSSVETSS
QDTHLEENLLSEAAGGCSASYHQLDVKSSLEYSGEMFTVTPLSWCPHLESVCELPPCGLE
VTQPCAACGTDIENWVCLTCYVVLCGRYVSQHMMSHGVSSGHNLVLSFSDLSVWCYGCDS
YIHNEVLIPAKQSAYYSKFGEEMPGA
NT seq
4401 nt
NT seq
+upstream
nt +downstream
nt
atggcgtctccccaggagcgaaagtcccctgcgatcactaccacgaaaaagcctgggaag
aaaagcacctctcctcaatgtcctccaacgctgcaggaagtgaagaaaagaggccaacgc
atgcgaaagacaccggaaagggacatttgtgaccaactagatgggctgcacctggacaga
gattcacctgcagtaggaactggccttgtatatgatgaccgaatgactctgccatactgt
ctttgggatgacaaattcccagagtgtccggcacgaatcttggcaattaaagagaagctg
gcgcagtatggtctggtggatcgctgtgttaaagtacctgctagagaagcatcggatgca
gatctcctgcttgttcacagttcagactttgtagagttaatgaagtccactcaagaaatg
aaccaggaaaaactcaaagagctgtcagatcgctatgactctgttttcttgcaccctgct
tcattcactacctcctgtctggctgtcggctctgtcttgcagttagttgataaagtcgtg
aagggggaaatccgcaatgggttagcattggtcaggcctccaggacaccatgcccacact
gacaaaatgaacggttactgcatgtttaatcatctggccattggggctaaatatgctcag
cacaatcatggggtaaagcgggtgctaattgtagactgggacgtccatcatggtcatgga
acacagttcatatttgaacacgatcccagtgtgttgtatttttccattcaccgatatgag
aacggagaattttggccccatcttgctgagtcttccagcagcgcggtggggaaggagcgc
ggggaacgctataatattaatgtgccctggaataagattgcaatgaaggatgcagattat
atcacagcatttcttcatcttctcctccctgttgcctatgagtttcagccacaccttgta
ctggttgcagctggatatgactctgtggtgggagatccaaagggagagatggctgccacc
ccagcatgctttgctcatctaacacacctgcttatgtctttggctgaaggaagacttatt
ttgtctctcgagggagggtataatttgcgctcagcttccgaagcggtctgtgcttccctg
aagattctcctcggagatccttgtccaagtttgcctcagccctttgccccctgtgagagt
ggcctggaatcgatctctgataccttctgtgttctcaggaagttttggcggagcctgcag
gaacaagatttcaccttaactcaggaagttaaagcacaagaaatcagtcagactgcatta
gaagatacgtcagaagatactctgacagtagtactggatgcatcgatgaaggaagtgatg
aggaagttgccacagcagcgcactggcctggtgtatgatgagcgcatgatggaacattac
aacatgtgggacagtggccaccctgagactccacaaagaattgcccgaatatacctgcgt
cacaaggagatggggctgttagatcgctgcattcgtctctgccaacgcgtagcaacaaaa
gatcagctacaaatgtgccacagtcttccctacattgaaaagatagaaaagtgttcccgt
atgaaacccagggacctgcatagaatgggggatgagtataactccattttcatcaacaac
aagtcttacagcagtgcctgtctggctgccggctcaacattcagtgtggtggaagctgtt
cttaaagggaaggttcaaaatggagtctgtatcgttcgcccaccaggtcaccatgcagag
ccaggcgcagcctgcggcttctgcttcttcaacaatgttgcccttgctgcacaatatgcc
cagagcctgaagaacccatcagaaccgcgattaagggtaatgattctggactgggacatt
caccatggcaacggaacacaacacattttccaggaagatgatagtgtactgtatgtgtcc
atccatcgatatgacgatggccagttcttcccagcttctgaggatgctgcacatgaccgg
gttggtgtcggccgtggagaggggttcaatgtgaatatcgcctggaatggtggcaagatg
ggtgatgcagagtacttactggcctttcataggattgtcatgcccattgcttatgagttt
aatccacagctggttttaatatctgccggttttgacgctgcgcgtggagacccacttgga
ggctgccgtgtctctccagaaggctatgcccacatgacacacctcctgatgggtctggca
ggtggcaaagtggtgatcgttctggagggtggttataatctgatctccatctcagattcc
atgtctatgtgtactcgcacacttcttggagatccccctcctcacttgactgacttacat
cctccccgtccatcagcactgcgtgcaatctccaatgtcctcagtgtccataacaaatac
tggcgcagcctcagattacaagttaacccctctccaccctctgaagtatcaaaggaggtg
tgttggacaccgcagaaacagcagccaagtaaagtcatgcctatggttgagtcttcatcc
tccccgcaactgacgaccatttcccctggaaagaatattgtagaaacacagtgtctccag
gaattttatttgactggcttcaaagctgatgatgatagtctgaacaccaggtctgaaatt
ttggaggtgaaaagtcagctgtctgtagccttcaggaatgagtccaatgacagtgtttcc
agcatagacagtcattctgtaacatatactacagaagaaagtatggaaacaccatcgtca
gagaacggtcagaccttggatagtgttggggagccttcacctcaaaaaagtactgaaatg
gctaaacatgaactcaaagagagctcagtaaataaggatgaagtctccaattctctttta
tccaacttagctgatgtagagaagaaagaagagttggtggttgaggtgcagattcctggt
caagattcagtgcacataggttctaatgaaggcgagtcgctgggaacagccattgaagtc
caggttttagaaagaacgccagatattttgatgtctgatgaccggacagagagctctgtg
gaggaactccttagagacttgaagctggacaatagtaaaaacacaactcccagcattact
gataatgacagtgaaccttctggtggggctagaaagaagatatttcctctagtgcagcaa
gtggctaatagttcagaggaaacttcttctcaagatactcacctggaggagaatctactc
tctgaagctgctggtaaatgctcagcctcatgtcatcagctagacgtggagtcttcactg
aaatactctggggagatatttacagtgacgccactggcctcgtgtcctcatctggagtca
gtgtgtgagctgcccccttgtgggctgaatgtgacacagctgtgtgctgcttgtggtaca
gacatagagaactgggtgtgcctgacatgttatgtggttctgtgtgggaggtatgtctct
cagcacatgatgtctcatggagtttcgtctggtcacaatcttgtactcagcttctctgat
ttgtctgtctggtgttatggctgtgactcctatatccataatgaggtcttgattccagca
aaacagtcagcctactacagtcgtggccaaaattcagtgcacttaggttccaataaaagc
aagtcactgggaacagtcattgaagtccaggttttagaaagagcgccagatattttgatg
tctgatgaccggagagaaagctctgtgaatgaactccttagagacgtgaagctggaagat
agtaaaaacacatcaaccaccagcattagtgatggtgaccgtgaacctgctggtgaggct
agaaagaagatatttcctgtagtccagcaagtggctgatagttcagtggaaacttcttct
caagatactcacctggaggaaaatctactctccgaagctgctggtggttgctcagcctca
tatcaccagctagatgtgaagtcttcactggaatactctggagagatgtttacagtgacg
ccactgtcctggtgtcctcatctggagtcagtgtgtgagctgcccccttgtgggctggag
gtgacacagccgtgtgctgcttgtggtacagacatagagaactgggtgtgcctgacatgt
tatgtggttctgtgtgggaggtatgtctctcagcacatgatgtctcatggagtttcgtct
ggtcacaatcttgtactcagcttctctgatttgtctgtctggtgttatggctgtgactcc
tatatccataatgaggtcttgattccagcaaaacagtcagcctactactccaaatttggc
gaggaaatgcctggagcataa
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