Aquarana catesbeiana (American bullfrog): 141110877
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Entry
141110877 CDS
T11018
Symbol
LIG1
Name
(RefSeq) DNA ligase 1 isoform X1
KO
K10747
DNA ligase 1 [EC:
6.5.1.1
6.5.1.6
6.5.1.7
]
Organism
acat Aquarana catesbeiana (American bullfrog)
Pathway
acat03030
DNA replication
acat03410
Base excision repair
acat03420
Nucleotide excision repair
acat03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
acat00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
141110877 (LIG1)
03410 Base excision repair
141110877 (LIG1)
03420 Nucleotide excision repair
141110877 (LIG1)
03430 Mismatch repair
141110877 (LIG1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
acat03032
]
141110877 (LIG1)
03400 DNA repair and recombination proteins [BR:
acat03400
]
141110877 (LIG1)
Enzymes [BR:
acat01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
141110877 (LIG1)
6.5.1.6 DNA ligase (ATP or NAD+)
141110877 (LIG1)
6.5.1.7 DNA ligase (ATP, ADP or GTP)
141110877 (LIG1)
DNA replication proteins [BR:
acat03032
]
Eukaryotic type
DNA Replication Elongation Factors
Other elongation factors
141110877 (LIG1)
Prokaryotic type
Elongation factors (archaeal)
Other elongation factors
141110877 (LIG1)
DNA repair and recombination proteins [BR:
acat03400
]
Eukaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
Long Patch-BER factors
141110877 (LIG1)
NER (nucleotide excision repair)
Other NER factors
141110877 (LIG1)
MMR (mismatch excision repair)
Other MMR factors
141110877 (LIG1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_A_M
DNA_ligase_A_N
DNA_ligase_A_C
mRNA_cap_enzyme
Motif
Other DBs
NCBI-GeneID:
141110877
NCBI-ProteinID:
XP_073458688
LinkDB
All DBs
Position
LG10:complement(127259732..127477491)
Genome browser
AA seq
1037 aa
AA seq
DB search
MSRGAGDRTRGAGVSALYSLFARKDSEVVIAAGGRDLWIQAFIFCYCLKMQRSIKSFFQP
KPGGAVKKEGGKTEDHGSQKGKCSTSKNASEHPLKERNGTAPTDDSASPVKRIPKKTVRI
LDSDDEEAMDVETTKKEKDGSEAAQKAKLATPPVTTSGEGTSVRNGGSSERSANSASPDV
SVTSSNIPKRKTARKQITKRKLENTLTEPDKQTQQLDAKEEVVKRQKKEANDGKSPMKSV
EESEQCTMDTLPENTKEMSVKKSEVKSEPEEETEQCTMDTSPGKTEEKNASPPSGKSKKG
NEMSEKFFERKGKASGKKDKESKKESKESSEKNVEEKSKVSEKPSPKEDSEKASEKSSAN
TPAKPTKNISSFFGGSKQDDSDNQADYNPSKSRYHPVNDACWTNGQMVPYLAVARAFEMI
EDESARLKNIETLSNLLRSVICLSPGDLLPCIYLCLNRLGPAYEGLELGIGETILMKAVA
QATGRQLDKIKAEAQEKGDLGLVAESSRSNQRTMFTPPKLTVSGVFNKLKEIAKMTGNAS
MNKKIDIIKGLFVACRYSEARYIARSLGGKLRIGLAELSVLAAIAQAVCLTPPGQEFPPA
VIDASKGMSTEAKKAWIEEHALILKQTFCELPNYDVVIPALLKHGIKELPQHCHLTPGVP
LKPMLAHPTKGVTEVLKRFDEAAFTCEYKYDGERAQIHILENGDVHVYSRNQESNTSKYP
DIISRIPKVKKDNVKSCIIDSEAVAWDPQKKQIQPFQVLTTRKRKDVEASEIKVQVCVYA
FDMLYLNGESLVREPFSRRRQLLRESFQEVEGEFTFATYMDTSNTDEISEFLDQSIKDSC
EGLMVKTLDQNATYEIAKRSHNWLKLKKDYLDGVGDTLDLVVIGAYLGKGKRTGKYGGFL
LASYDEESEEYQTICKIGTGFTDEDLENHYNFLKDHVIDGPRSYYRWDSAAQPDHWFEPV
QVWEVKCADLSISPVHKAAVGLVEDEKGISLRFPRFLRIREDKKPEEATNSYQVADLYKK
QQQIQNTSAEKGDDDFY
NT seq
3114 nt
NT seq
+upstream
nt +downstream
nt
atgtcacgtggtgcgggtgacaggactcggggggcgggagtgtcagctctgtattcactt
ttcgcgcgaaaagacagcgaggttgtgatcgcggctggcgggagggatctctggattcaa
gcgtttattttttgttactgtttgaagatgcagcggtctataaagtcatttttccagccc
aaaccaggaggggctgtaaagaaagaaggaggaaaaacagaagatcatggttctcaaaaa
gggaaatgttctaccagtaaaaatgccagtgaacatccattaaaagagagaaatggtaca
gccccgactgatgattccgcatctcctgtaaaacgtattccaaagaagactgtacggata
ttagacagtgatgatgaagaagctatggatgttgaaaccacaaaaaaggaaaaagatggt
tctgaagcggctcaaaaagcaaagctagctaccccaccagttaccacttccggggaaggt
acctctgtcagaaatggggggtccagtgaaagatccgccaattctgcttcaccagatgtt
tctgtaacttcttccaacattcccaaacgcaaaaccgctcgcaagcagataaccaaaaga
aaattagaaaataccttaacagaacctgataaacagactcaacagttagatgccaaagaa
gaagttgtgaagcgccagaagaaagaagccaatgatggaaagtctcccatgaaatcagtt
gaagagtctgaacaatgtaccatggacacattacctgaaaatacaaaagaaatgtctgtt
aaaaaatctgaagttaagtctgaacctgaagaagagaccgagcaatgtaccatggacaca
tcacctggaaagactgaagaaaaaaatgcaagtccaccttctggcaaatcaaaaaagggc
aatgaaatgtcagaaaaattcttcgaaaggaagggtaaagcttcaggaaaaaaggataaa
gaatctaaaaaagagagcaaagaaagttctgaaaaaaacgtagaggaaaagagtaaagtc
tctgaaaaaccttctccaaaagaagattctgaaaaggcttcagagaagtcctctgctaat
actcctgcgaagcccacaaaaaatatttcaagtttttttggaggcagcaagcaagatgat
tcggacaatcaggcagattacaatccatcaaaaagtcgttaccatccagtaaatgatgcc
tgctggactaatggccagatggttccttatttggcagttgcacgcgcatttgaaatgata
gaagacgaatctgcacgcttaaagaacatagagacacttagtaatttgctgcgctctgtt
atctgtctgtctccgggggaccttctaccttgcatctacctgtgtttgaaccgcctgggt
cctgcttatgaagggcttgaacttggtattggagaaactatattgatgaaagctgttgca
caagcgactggacgtcagttagacaaaattaaagcggaggctcaagagaagggggatctc
ggtcttgttgcggaaagcagccgcagtaaccagcgcaccatgttcacacccccaaaactt
actgtttcgggtgtctttaataagctgaaagagattgccaagatgactggtaatgcttcg
atgaataagaagattgatatcattaaaggcttgtttgtggcatgcagatattctgaagca
cggtacattgctagatctttaggaggaaaacttcgaataggattagcagagctgtctgtt
ttggcagccatcgcacaagccgtgtgccttacgccaccaggccaagagtttccaccagct
gtgatagatgcctcgaagggaatgagcacagaggctaaaaaagcatggattgaggagcat
gctttgatcctgaaacagacattctgtgagttaccaaactatgatgtggtcatcccagct
cttctgaagcatggaattaaagagcttccccaacattgccaccttactccaggagtccca
ttaaagccaatgttggcacacccaaccaagggagttacagaagtactgaagaggtttgat
gaagctgcttttacctgtgaatataagtatgatggagagcgtgcacagatacacatcctg
gagaatggagacgtacacgtatatagcagaaatcaggaaagcaatacatcaaaatatcct
gacataatcagcagaatccctaaggttaaaaaagacaatgtaaagtcttgcatcattgat
tcagaagctgttgcatgggatccacagaaaaagcagatccaacctttccaagtactcact
actagaaaacgaaaggatgtagaagcttcagaaataaaagtccaagtgtgcgtgtatgct
tttgacatgttgtacttaaatggagagtctctagttagagaaccattttctagaagacgc
cagctactaagagagtcttttcaggaggtggaaggagaattcacatttgctacatatatg
gacacatcaaacacagatgaaatttcggagtttcttgatcagtcaattaaagattcttgt
gaaggtctgatggtaaaaactctagaccagaatgccacatatgaaattgcaaagcgttct
cacaattggttaaagctaaagaaagattacttggatggtgtaggagacactttggatctg
gttgttattggtgcttatttggggaaaggaaagcgaactggaaaatatggaggctttttg
ctggcatcatatgatgaagagagtgaggaatatcaaaccatttgcaagattggaacaggg
tttacagatgaggatctggaaaaccactacaatttcctgaaggaccatgtgattgacgga
ccacgcagttactaccgctgggacagtgcagcacagccagatcattggtttgagcctgtg
caagtttgggaagtgaaatgtgcagatctttcaatctctccagttcataaagctgcagtg
ggactggtggaagatgaaaagggaatttcactacgtttcccacgttttcttcgaattcga
gaagataaaaaaccagaagaggcaacaaatagttatcaggttgctgacctttataagaaa
caacaacaaatacagaacacatctgcagagaaaggagatgatgatttctattag
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