KEGG   Aquarana catesbeiana (American bullfrog): 141112119
Entry
141112119         CDS       T11018                                 
Symbol
DDB1
Name
(RefSeq) LOW QUALITY PROTEIN: DNA damage-binding protein 1
  KO
K10610  DNA damage-binding protein 1
Organism
acat  Aquarana catesbeiana (American bullfrog)
Pathway
acat03420  Nucleotide excision repair
acat04120  Ubiquitin mediated proteolysis
Brite
KEGG Orthology (KO) [BR:acat00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   04120 Ubiquitin mediated proteolysis
    141112119 (DDB1)
  09124 Replication and repair
   03420 Nucleotide excision repair
    141112119 (DDB1)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   04121 Ubiquitin system [BR:acat04121]
    141112119 (DDB1)
   03400 DNA repair and recombination proteins [BR:acat03400]
    141112119 (DDB1)
Ubiquitin system [BR:acat04121]
 Ubiquitin ligases (E3)
  Multi subunit type E3
   Cul4 complex
    Adoptor protein
     141112119 (DDB1)
DNA repair and recombination proteins [BR:acat03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    GGR (global genome repair) factors
     Cul4-DDB2 complex
      141112119 (DDB1)
    TCR (transcription coupled repair) factors
     Cul4-CSA complex
      141112119 (DDB1)
SSDB
Motif
Pfam: CPSF_A Beta-prop_RSE1_1st Beta-prop_RSE1_2nd Beta-prop_RIG_2nd Beta-prop_IFT122_1st
Other DBs
NCBI-GeneID: 141112119
NCBI-ProteinID: XP_073460691
LinkDB
AA seq 1140 aa
MSYNYVVTAQKPTAVNACVTGHFTSEDDLNLLIAKNTRLEIYVVTAEGLRPVKEVGMYGK
IAVMELFRPKGESKDLLFILTAKYNACILEYKQTGDSIDIITRAHGNVQDRIGRPSETGI
IGIIDPDCRMIGLRLYDGLFKVIPLERDNKELKAFNIRLEELHVIDVKFLYSCQAPTICF
VYQDPQGRHVKTYEVSLREKEFSKGPWKQENVEAEASMVIAVPEPFGGAIIIGQESITYH
NGEKYLAIAPPIIKQSTIVCHNRVDVNGSRYLLGDMEGRLFMLLLEKEEQMDGSVTLKDL
RVELLGETSIAECLTYLDNGVVFVGSRLGDSQLVKLTVDSTEQGSYVAAMETFTNLGPIV
DMCVVDLERQGQGQLVTCSGAFKEGSLRIIRNGIGIHEHASIDLPGIKGLWPLRVAASRE
TDDTLVLSFVGQTRVLTLSGEEVEETDLAGFVDDQQTFFCGNVAHQQLIQITSASVRLVS
QDPQSLVSEWKEPQGRKVSVCSCNSRQVLLAVGRVLYHLEIHPGELRQMSCTEMEHEVAC
LDVTPLKGSDTMSSLCAIGLWTDISARILSLPDFQLLHKEMLGGEIIPRSILMTSFENSH
YLLCALGDGALFYFSLNTETGLLSDRKKVTLGTQPTVLRTFRSLSTTNVFACSDRPTVIY
SSNHKLVFSNVNLKEVNYMCPLNSEGYPDSLALANNSTLTIGTIDEIQKLHIRTVPLYES
PRKICYQEVSQCFGVLSSRTEVQDASGGSSPLRPSASTQALSSSVSSSKLFSGSTSXHET
SFGEEIEVHNLLIIDQHTFEVLHTHQFLQNEYTLSLVSCKLGKDPSTYFIVGTAMVYPDE
AEPKQGRIVVFQYSDGKLQTVAEKEVKGAVYSMVEFNGKLLASINSTVRLYEWTAEKELR
TECNHYNNIMALYLKTKGDFILVGDLMRSVLLLAYKPMEGNFEEIARDFNPNWMSAVEIL
DDDNFLGAENAFNLFVCQKDSAATTDEERQHLQEVGLFHLGEFVNVFCHGSLVMQNLGET
SPPTQGSVLFGTVNGMIGLVTSVSESWYNLLLDVQNRLNKVIKSVGKIEHSFWRSFHTER
KTEAATGFIDGDLIESFLDISRSKMQEVVANLQIDDGSGMKRETTVDDLIKIVEELTRIH
NT seq 3423 nt   +upstreamnt  +downstreamnt
atgtcgtacaactacgtggtgaccgcacagaagcccactgcggtcaatgcgtgtgtgaca
ggtcattttacatctgaggatgacctgaatcttctgatcgcaaagaacacacgactggag
atttatgttgtaacagcagagggtcttcgacctgtgaaagaggttgggatgtatggcaag
attgcagtcatggagcttttcagacccaagggagaaagtaaggacctgctctttatactg
acagccaagtacaatgcctgtatccttgaatataaacaaactggggacagcattgatatc
atcacccgagcacatggcaatgttcaggatcgcatcggccgaccatctgaaactgggatc
attggcataattgaccctgattgccgaatgattggtctgcgcctttatgatggtttgttt
aaagttatccctttggagagggataataaggagttaaaggctttcaacatccgattggag
gagcttcatgttattgatgtcaagttcctctatagctgtcaagctcccaccatctgcttt
gtgtaccaagacccacagggccgtcatgtcaagacttacgaggtctccctcagggaaaag
gagtttagcaaaggtccctggaagcaggaaaatgttgaagctgaggcatccatggtgatt
gcagttccagaaccttttggaggtgccattattattggacaagaatctataacgtaccat
aatggagaaaaatatttggcaatagcaccccctattattaagcaaagcacaattgtgtgc
cataatcgtgttgatgtgaatggatcaagatatcttcttggtgatatggaaggtcgtctt
ttcatgttgctgctcgagaaagaagagcagatggatggaagtgtcactttaaaggaccta
agagttgagcttcttggagagacctccatcgctgaatgtctcacttacctggataatgga
gtagtgtttgtgggttctcggcttggagactcacagctagttaagctaactgtagacagt
actgagcagggctcttacgttgcggcaatggagactttcactaacctgggcccaattgtg
gacatgtgtgtagtggatcttgaaagacagggacaaggacagcttgttacctgctctgga
gcgttcaaggaaggttcgctgcggattatcagaaatggcattggcattcatgagcatgcc
agcatcgacttaccagggatcaaaggcctgtggcctctcagagttgctgccagtcgtgaa
acagatgacacgttggtcctgtcttttgttggacagaccagagttttgaccttgtctgga
gaagaggtggaagagaccgaccttgctggttttgttgacgatcagcagacctttttctgt
ggcaatgtggcacatcagcaactcattcagataacctcagcatcagtgcgtctggtgtcc
caagacccccagagcttggtgagtgagtggaaggagccccagggtcgtaaagtcagtgtc
tgttcctgcaacagccgtcaagttctacttgctgtgggaagagtcctttaccatctagaa
attcaccccggagaacttagacagatgagctgtactgaaatggaacatgaagttgcctgt
ttagatgtgaccccgctgaaaggcagtgacacaatgtcctcactttgtgctatcggcctt
tggactgacatctctgcccgaatcctaagtttgccagattttcagttgttgcacaaggag
atgctggggggcgagattattccaagatccatccttatgacttcatttgagaacagtcac
tacttgctgtgtgcgttgggtgatggtgctctgttctatttcagcctcaacacagagaca
ggtcttttgagtgacagaaaaaaggtcacattgggaacacagcccacagtgttgaggacg
ttccgttctctgtccacaacaaatgtatttgcttgttctgatcggccgactgtcatctac
agcagcaaccataaacttgttttctccaatgttaacttgaaggaagtcaactatatgtgc
ccattaaattcagagggttatcctgatagcttggccctagctaacaatagcacactaacc
attggaactattgatgaaatccagaaactgcatatcagaactgtaccactctatgaatct
cctaggaaaatttgctatcaggaggtgtctcaatgttttggcgttctgtctagtagaaca
gaggttcaggatgctagtggcggaagctctcctctacgaccaagtgcaagcactcaggca
ttgtcttccagtgtgagcagcagtaagcttttttcaggaagcacctctncccatgaaacc
tcatttggagaagaaattgaagttcacaatctacttatcatagaccagcacacttttgaa
gtcctgcacactcaccagtttctgcagaatgaatacacacttagcttggtgtcctgtaag
ctggggaaggatccaagcacttactttatagtaggaacagccatggtatatccggatgag
gcagaaccaaagcaagggaggattgtggttttccaatacagtgatgggaagcttcagact
gttgctgagaaagaagtgaaaggagctgtgtactctatggtggaatttaatgggaagctg
ctggccagtatcaatagcacggttcgcctgtatgagtggacagcagaaaaagagctgcgt
acagaatgtaatcactacaacaatattatggctttgtatctgaaaaccaagggcgatttc
atcctggtgggagacttgatgcgttcagtgttgttgctagcttataagccgatggaagga
aactttgaagagattgcacgggattttaatcccaactggatgagtgcagtagagattctt
gatgatgataacttcctaggagcggagaatgcatttaatttatttgtatgccagaaagac
agtgctgccacaacagatgaagagcgacaacacctgcaggaagttggactttttcatctg
ggcgagtttgtcaatgtcttttgtcatggctccctggtgatgcaaaatcttggggagacg
tccccaccaacacagggttctgtactttttggaactgttaatgggatgatcggtcttgtg
acatcggtatctgaaagctggtacaatcttctgcttgatgttcaaaataggctcaacaaa
gtcatcaagagcgtaggcaaaatagaacactcattttggagatcattccacacagaaaga
aaaactgaagctgcaacaggatttatagatggagatctgattgagagcttcctagatatc
agtaggtcaaagatgcaggaagtagtagcaaatttacagattgatgatggtagcggtatg
aagagagagacaactgttgacgatttgatcaaaatagtggaagagctaaccaggattcac
tga

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