Aquarana catesbeiana (American bullfrog): 141113183
Help
Entry
141113183 CDS
T11018
Name
(RefSeq) probable ATP-dependent RNA helicase DDX60 isoform X1
KO
K20103
ATP-dependent RNA helicase DDX60 [EC:
5.6.2.7
]
Organism
acat Aquarana catesbeiana (American bullfrog)
Brite
KEGG Orthology (KO) [BR:
acat00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
acat03019
]
141113183
Enzymes [BR:
acat01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
141113183
Messenger RNA biogenesis [BR:
acat03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Exosome cofactors
141113183
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PIN-like_DDX60
DEAD
ResIII
Helicase_C
DUF6842
Motif
Other DBs
NCBI-GeneID:
141113183
NCBI-ProteinID:
XP_073462223
LinkDB
All DBs
Position
LG01:complement(765762329..766102961)
Genome browser
AA seq
1729 aa
AA seq
DB search
MATDKPRKRRGKNKNNQCSTEEQFSEPSIPTASNDHPPSPGRRFAIQMSELSEHNDFLFG
MASFLMEQLSRAKFESLLNDYMESELFVIDGDSLIITCATNESLRRGQNLHFFFLVERFL
LNLTNKGAKYSIVFFNDMEHLYTGCPDLISLRSQLMLHLENNTDITVHYFSNFLCEQWRE
FINHQALYFVMASDEGLNNEQTCFLNLFILHALGNQINVVLTAGQDSDNLRVFGYHVSAT
FHHRQYLQKNGAKIKKVFHKLITSFQTPERSNCLPYLQHLENVKKQVYHEISLLRTHLSD
GSDIRILICAISCSMTLRIFNEAQRTPQGDVSFLAIDEVADLCRMMCLSEALMIVLPLSQ
RAKSRLINANWNMEAALILNMLKICEAFALNLLRTQCKKLAGSINWTYISNLSDDLLLKN
IAYYCEKEMSTGCVPDIHLETGEEIEQVFRHIWDITLQLSQCGNQLQSYRLRTTRPFLSE
DASVNVDMERIQSLGLIPVSSDIIDDYAGDIVNDLAVLTSDDPALASLVQAKPFDELTHW
HSRRPLSDDYDRTKWEPIKDAYALRSYQRFQTFQRFYGKSLGMSMSKQIVLKSFTEINQK
IHKAHGQKKETKMSKKDQIIEENLKKTRTLEEKKEIEKWKAKASSLAGEIRSDIFCGMRQ
AEQFISSLQTKTIKLQAQFHALETCFALWVNHCKANTDKETRDQRIVVEIMKLIQAIVND
NQDMSQREEQKKVSPFLIHLGFENLAEQLHYLQVTRSENKESKYAVGVGSSRFQMQYMGP
YLKKDERTDPDPRIQHFIPDTWQRELLDVVDNNESAVIVAPTSSGKTYASYYCMEKVLTE
SNDGVVVYVAPTKALVNQVVATVINQFTKDLPKGVALCGVFTRDYRCDTLNSQVLVTVPQ
CLEILLLSPHRQAWVNRIKYMIFDEVHCLGGEIGAEVWEHILAMVRCPFLALSATISNPE
HLTEWLQSVKKYWALHDEAEEHKLRPKAAKKKALKAERRSCRVRLVLHDRRYNDLEKFVC
SVKGDEINFHHYHPCAALTISQIQESGIPKDLAFSPRESLQLYDAMVTTRPEWPRKAALD
PENNVYLKDKLAITKIDAANYEEEVKKELSEWVKKGFNAEVSQVLKSLGHFLSSEMYCQR
HFPNLVQRLRQLDKLPALFFAFDIKLVEQLAKELGQNLTKKSETMQTPKIVKEMQKLNMK
GKRIEKTIKSSRKDESFIKEATAATVKQKYEKISKESPECSYANYGAVDSETLMEMTEQI
KTVRHSEELISLAERGIGYHHGSMDYKARRFVEMLFRMGHIRVVTATSSLALGINMPCKS
VVFLKDSSYLDALNYRQMAGRAGRRGLDLEGNVYFFNIPMTKVEMLIKSNVPELRGQFPL
SISLVLRLMLLAAKADDKGDARAKVLSVLKHSLMSFKHPVATQMLKMFFVFSLQFLVHEG
YLDKECDPLELTGLVTHLHYHEPSNFLFVSFLKKGLFHELCKPSTKYPGTFPDSVMETLM
LVLAHLFGREYILSQKMKYMGPFFQSKVFLEKLPDDFAAVVEEHNRKVALIFGQCILTAS
KLADTEKEYQLPLSEINLSGKECMNSGLVHHLMSRSEGKSGISPFACLSGNTDHDLMTMK
NINSMMLSTIQIPEKYFPIFYLEKTDACGRALILNSYALDFYKHGSIKAIVSDNGFIEGD
AFYKLRDFSLSIAAISISLREMCEDEYDPVPLAFEQLREKFRQKLDLVK
NT seq
5190 nt
NT seq
+upstream
nt +downstream
nt
atggccacagacaaacccagaaaaaggagaggcaaaaataaaaataaccaatgctctaca
gaagaacagttttctgagccaagtataccaactgccagcaatgatcatcctcctagccct
ggaagaagatttgcaattcaaatgtcagagctgtcagagcataacgattttctttttgga
atggcaagctttctcatggagcagttatcaagagccaagtttgaaagtttgcttaatgat
tacatggaatctgaattatttgtgattgatggagattctttaattattacatgcgctacc
aatgaatctctgaggagaggacagaatttgcatttctttttcttggtggaacgttttcta
ctcaatttgacaaataaaggagcaaaatacagcattgtatttttcaatgatatggaacat
ttgtatactggatgtcctgaccttatctctttacgctcccaacttatgttgcatcttgaa
aataatacagacatcactgtacattacttttccaactttttatgtgagcaatggagggag
tttatcaaccatcaggctctttattttgtgatggcttctgatgaaggactaaacaatgaa
cagacatgttttttgaatctctttatccttcatgcacttggaaaccaaataaatgttgtt
ctcacagctggacaggactcggataatctcagggtttttggctatcatgtgagtgccaca
tttcatcatagacaatatctgcaaaagaatggtgcaaagataaagaaagtttttcataag
ctaattacaagttttcaaacacctgagagaagtaattgtttaccctatttgcaacatttg
gaaaacgtaaaaaaacaggtttatcatgagatttctcttcttagaacgcatttaagtgat
ggatcagacatacgcatactcatatgtgcaatttcatgttctatgacattaagaatattt
aatgaggcgcaaaggacaccacagggtgatgtttcattcttggcaatagatgaagtggct
gacctatgtagaatgatgtgtcttagtgaagctttaatgattgttctgcctctttctcaa
agggcaaaatctaggctcataaatgctaactggaacatggaagctgccttaattttaaat
atgctaaaaatatgtgaagcttttgccttaaaccttctaagaactcaatgtaaaaaactg
gctggatcaataaactggacttatatatccaacctcagtgatgatttactgctgaaaaac
attgcctattactgtgaaaaagagatgtccactggttgtgttccagatatacatttggaa
accggggaggagattgagcaggtgtttagacatatctgggatataacacttcagctaagt
cagtgtggaaaccaattacaatcatatcgtcttcgaacaacaagacccttcctttcagag
gatgcttcagttaatgtggacatggaaagaatacagagtttgggactaataccagtgagt
tctgatataattgatgactatgctggggacattgtgaatgatttagcagtgttaaccagt
gacgatccggcattggcatcacttgtccaagctaaaccatttgatgaactcacacactgg
cattccagacgaccgctctcggatgactatgacagaacaaaatgggagccaattaaggat
gcttatgcccttagaagctatcagagattccagacttttcaacgattttatggaaaatcc
ttaggcatgagtatgtctaaacagattgtattgaaaagtttcactgaaatcaatcagaaa
attcacaaggctcatggacagaaaaaagaaacaaagatgagcaaaaaagaccaaataatt
gaagaaaatctgaagaagaccagaaccctggaagagaagaaggaaattgaaaagtggaaa
gccaaagcttcatcccttgctggagaaataaggagtgacatcttctgtgggatgagacaa
gcagagcagtttatcagctcattgcagacaaaaactataaaacttcaggcacagtttcat
gctcttgaaacatgtttcgcactgtgggttaaccactgtaaagctaacacagataaagaa
acaagagatcagagaattgttgtggaaattatgaagctaatacaggcaattgttaatgat
aaccaggatatgtcacaaagggaagagcaaaaaaaggtgtctccttttcttattcactta
ggatttgaaaacttagccgaacaactgcattacctacaggtaaccaggtctgaaaataaa
gagagtaagtatgcagttggagttgggtcatctcgtttccagatgcagtatatgggtcca
tatttaaagaaagatgagagaacagatccagatccaaggattcagcattttataccagat
acttggcagagggaactccttgatgtggtggacaataatgaatctgctgtaatagtggct
cccacctcttcaggaaaaacctatgcctcttactactgcatggagaaagtgttgactgaa
agcaacgatggagttgtggtctatgttgctcctactaaggctcttgtaaatcaagtagtg
gccactgtaattaatcagttcaccaaagatctaccaaaaggagttgcattatgtggggtt
ttcacaagagattatcgatgtgatacgttgaacagccaggtgttagtaacagtgccacag
tgtttggaaatccttctattatctccacatcgacaggcatgggtgaatagaatcaagtat
atgatatttgatgaggtgcattgtttgggaggagagattggagcagaagtctgggaacac
atattggcgatggttcgttgtccattcctggcattatctgcaacaattagcaatccagaa
cacctaactgagtggctacagtctgtcaaaaaatactgggcactacatgatgaagcagag
gaacacaaattgcggccaaaagcagctaaaaagaaagcattaaaagcagaaaggagatcc
tgccgagttcgactagttctgcatgacaggagatacaatgacttggaaaaatttgtgtgt
tctgtgaaaggtgatgaaattaactttcatcattaccatccatgtgctgcattaacaata
tcacaaatccaggaaagtggaattccaaaagatctggcattctctccacgggaaagttta
cagctctatgatgctatggtgaccacacggccagaatggcccaggaaagcagcacttgat
ccggagaacaatgtatatcttaaggacaaacttgccatcacaaaaatagatgctgccaat
tatgaagaagaagtgaagaaagaattgagtgaatgggttaagaaagggttcaatgctgag
gtctctcaggtgctcaaaagccttggacacttcctatcttctgaaatgtactgccaacgt
cattttccaaaccttgttcaacgtttaaggcaacttgataaactacctgctttatttttt
gcgtttgatattaagttagttgaacaattagcaaaggaactgggacagaatctgacaaag
aaatctgaaacaatgcaaaccccgaagattgtgaaagaaatgcagaaactgaatatgaaa
ggaaaacgaatagagaagaccattaagtcttcgagaaaagatgagtcctttattaaagag
gccacagctgcaactgtaaaacaaaaatatgagaaaatatccaaagaatcaccagaatgt
agctatgctaattatggagcagtggacagtgagacattaatggaaatgactgaacagata
aaaactgtgagacattcagaagagctgatatcgctggccgaaagaggcattggataccat
catggatccatggattataaagcaaggcgttttgttgaaatgctgttccgaatggggcac
atcagggttgtgacagctactagttctcttgcactggggatcaacatgccatgcaaatct
gtggttttcctcaaagattcatcttacctggatgcactgaactacagacagatggcaggg
cgtgctggaagaagaggactggatttagagggaaacgtctacttttttaatattccaatg
acaaaagtggagatgctcatcaaatccaatgttccagagctaagaggccagtttcctctg
agcatttcacttgttttaagactaatgctgctagcagccaaagcagatgataaaggggac
gccagagcaaaggttttatctgttttgaagcactcactcatgtcattcaagcatccagtt
gcgactcaaatgttaaagatgttttttgtgttttctttgcaattcctggtccatgaggga
tacctggataaagagtgtgaccccttggaattaacaggactagttactcatttgcactat
catgaaccatcaaattttttgtttgtcagtttcctaaaaaaaggactctttcacgagtta
tgtaaaccaagcactaaatatcctggcacatttccagattctgttatggaaactttaatg
ctggtgttggcacacttgtttggaagagaatacattctttcacagaagatgaaatatatg
ggtcctttcttccaatccaaggtctttcttgagaaactaccagatgattttgctgctgtc
gtggaagaacacaacaggaaagttgcattaatatttggtcagtgtattctgacagcttct
aaactggcagatacagagaaggaatatcaacttcctctctcagagatcaatctttcaggc
aaggagtgcatgaattcagggttggtgcatcatctgatgtcacgctctgaaggaaaaagt
ggaatatcaccatttgcctgtctttcgggaaacactgatcatgacttgatgacaatgaaa
aatataaacagtatgatgttgtcaaccattcaaattcccgagaagtatttcccaattttt
tatttggagaaaactgatgcatgtggaagagcattgatcctcaactcctatgcccttgac
ttttataaacatggttcaataaaggcaatcgtttctgataacgggtttattgaaggagat
gctttttacaaattaagggatttctcactttcgattgcagccatcagcatctccttgagg
gaaatgtgtgaagatgaatatgatccagttccattggcttttgaacagctcagagaaaag
ttccggcagaaacttgaccttgtcaaataa
DBGET
integrated database retrieval system
