Aquarana catesbeiana (American bullfrog): 141113204
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Entry
141113204 CDS
T11018
Name
(RefSeq) probable ATP-dependent RNA helicase DDX60 isoform X1
KO
K20103
ATP-dependent RNA helicase DDX60 [EC:
5.6.2.7
]
Organism
acat Aquarana catesbeiana (American bullfrog)
Brite
KEGG Orthology (KO) [BR:
acat00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
acat03019
]
141113204
Enzymes [BR:
acat01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
141113204
Messenger RNA biogenesis [BR:
acat03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Exosome cofactors
141113204
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PIN-like_DDX60
DEAD
ResIII
Helicase_C
Motif
Other DBs
NCBI-GeneID:
141113204
NCBI-ProteinID:
XP_073462276
LinkDB
All DBs
Position
LG01:complement(766258648..766735907)
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AA seq
1763 aa
AA seq
DB search
MASRGSESEEDASSSESEAPSESDDFSEDDTISESSESLQNTESENTNTSESTTKQKEEA
SGMKKRICFSDVIFRILSQQLSRSKFVSLLNDYVESEFFVIHGDSLIITCAANSSLLPGE
SLHFFFLVEKFLFNLTSRHARYVIVFFQDFEHSSPLLRCLRIQLKLHLQKNTNIAVHTFS
SFLCEEWKTFLKKQAPYFFMVSDEGMDKRQTLYLNMLILHALGNQIDIALTDAQDSDHLR
VYGYYIKSTIIIKQFIQKNAILFEKVLQGLNATFQKHAEQSFFLQCIQEIADKEQVQECI
SLLSTVFNENCDVRFATCVFSCSLALRIHARTENSHYQNDNDPRVTLEEAADLCRMQCLS
VAMRIILPLCQRAKLRRIKAEWNRDALLFLRMQQRCDEIALGLMKEHCKKTEINWTHVSD
ISDHLLLKNITYYCEKEYNADVKLEFGEKINEMYTCLWNSILKLFPQGEHFLSYELRRTV
KDFLTPESSVNMQQEDMLPTGLLPMQSDIIEDYAGDAIKELPLLSEDPVFCSLVNKKTYD
ELKHWHTGRLLSDDYDRTKNEQHDMLKDKKALKKYQQLQLHNHRYGQTLGVKTSTKIVVQ
KDQPEEKKYVHKAPDKKKTPQMKKGDQIKEENTRNREAIKENKEQEKWNNLTSSLKKQLR
GNFSSGISELEKSMNSLQTNAVRYRAQIDALTMCFEIWLEHCKTVSEDKKDMNIAVEIMK
IIQSIMAKYKDMVQRADKHRIAAYVGQLGFQNLSLSLKDTEVPIKEGKKHSYGAGAGVGV
GVGVGSARFQMKYMGPYLQRDERSDPDPRVQNFIPDTWQRELLDVVDNNESAVIVAPTSS
GKTYASYYCMEKVLRQSNESVVVYVSPTKALVNQVVATVTSMFNKDLPNGMALCGVFTRD
YRTDALNCQVLVTVPQCLEILLLSPHRQDWVKKIKYLIFDEVHCLGGELGAEVWEHLLVM
IRCPFLALSATISNPERLTEWLQSVKNYWQQIDEREDSLVANPPKKGRQNKLQKTKKKSS
RVRLVHYDKRYNDLETYICSVQNSNVTAEHYHPFAALTIDHVKNYGIPKDLTCSPRECIQ
LYDTMAKVWPTCASMKTLDPEENIHLKDKLLITKNDVIKYQEALKSELVDWIEKGNCAQV
SEVLEILKPNEPTNDMDSRQYFPQLIEKLNTINKLPVLIFAFTVGMVEGLAIQLDRHLEE
KQKKKHNPQDEKELRKLEEKAEKLEKSIQPSCSDSFDSKRSNATTRDQESQITLQENYKI
LKQKIEKLKETPPDCTYADEMAVDEKTLGNLYRRMTYSRDASTLIPLSKRGIGYHHGSID
AKGRTFVEMLFRMGYIKVVTATGTLALGINMPCKSVVFLHDSIYLDALNYRQMAGRAGRR
GLDLEGSVYFFNIPVPKVKKLMKSNVPELRGQFPLSISLVLRLMLLAAKADDKEDAKAKV
LSVLKHSLMTFKHESETKVLKLYCIFSLQFLLSEGYLNHDCYPTEFTGLVTHLHYHEPSN
FVFVSFLEKGLFHQLCKPLPEDPTKFPDSVMQTLVLILANLFGRLYLAPCRRSLKEKFYQ
SKVFLEKLPKDFAAAVKEYNKKVATVFGHCILTASKLADMEKEYQLPLTQISFSGKECMD
SRLVDHLMSHSEGRSGISPFACLSGNTDHDLMKMKNISSLMLQTAQIPQKYIPLLNPTRR
DLGGRKMFLNSYALDFFKHGSLSAIIMDNGLNSGDAYCQLKDFKLTIASISVSLKELCED
ENDPVALAFDQLNTMYFEKFNPV
NT seq
5292 nt
NT seq
+upstream
nt +downstream
nt
atggcttctagaggatctgagtcggaggaagatgcgtcgtcatctgaaagtgaagcccca
tctgagagtgatgacttttctgaagatgacacaatttctgaaagttcagaaagtttgcaa
aatacagaatctgaaaataccaatacttccgaatctactacaaaacaaaaggaggaggct
tcaggaatgaagaaacgtatttgcttttctgatgtaatattccgcattctctcacaacaa
ctatcaagatcaaaatttgtgagtttactcaatgactatgtggagtctgagttctttgtc
attcatggagactccttgataatcacgtgtgctgcaaatagttccttgttaccaggagag
agcttacacttttttttcttggtggaaaagtttctgttcaatttaacaagcaggcacgcc
agatatgtcattgtgttttttcaggatttcgaacactcatccccccttttgagatgcctg
cgcatacaactcaaactacaccttcagaaaaatacaaatattgctgttcacacattttca
agctttctgtgtgaagaatggaaaacatttctcaaaaaacaggctccatacttcttcatg
gtttctgacgaaggaatggacaaacgtcaaacactgtatttaaatatgttaatacttcac
gctcttggaaatcagattgacattgcgctcactgatgcacaggattcggatcacctcaga
gtgtatggatactacatcaaatcgactattataattaagcaattcatacaaaagaatgct
atcctttttgagaaagtacttcagggattaaatgcaactttccaaaagcacgcagagcag
agtttttttcttcagtgcatacaggagattgcggacaaagaacaggtgcaggaatgcatt
tctctactgtccacagtttttaatgagaattgtgatgtgcgttttgcaacttgtgttttt
tcatgctccttggcactgagaatacatgcaagaacagaaaactcccattatcagaatgat
aatgatccacgcgtgaccctggaagaagcagctgacctatgtagaatgcaatgcctttct
gtggcaatgaggatcattttgccactttgccagagagcaaaattaagaagaataaaagca
gaatggaacagagatgctctcttatttttacgcatgcaacaaagatgtgatgagattgca
ttaggtctaatgaaagagcactgcaaaaagacagaaataaactggactcatgtttccgac
atcagtgatcatttactgctgaagaacatcacctattactgtgaaaaagaatataatgca
gatgtgaagttggaatttggggagaaaataaatgagatgtatacatgtctatggaacagc
atactgaaattatttccacaaggagaacattttctgtcctatgaactaagaagaacagtg
aaagattttcttacaccggagtcatctgtgaatatgcaacaagaggatatgcttcctaca
ggcttgttacctatgcaaagtgacataattgaagattatgctggggatgctataaaggaa
ttaccactgttgagcgaagatcctgttttttgttcactggtaaataaaaaaacatatgat
gaacttaagcactggcatacaggtcggctactaagtgacgactatgacaggacaaagaat
gagcaacatgacatgctgaaagacaaaaaggcattaaaaaaataccaacaactccagcta
cataatcatcgatatggacaaacattaggggtgaaaacttcaacaaaaatagtagtgcaa
aaagatcaaccagaagagaaaaagtatgttcataaagctcctgataagaaaaaaacacct
cagatgaaaaaaggggatcaaataaaagaagagaacacaaggaacagagaagccattaag
gaaaacaaagagcaagagaaatggaacaacttgacatcatctttaaaaaaacaactcagg
ggaaattttagctctggaatatcagagttggaaaaatccatgaattctttgcagacaaat
gcagtcagatatcgggcacagatagatgcgctaaccatgtgttttgaaatatggcttgaa
cactgcaaaactgtgtctgaagataagaaagatatgaatattgcagtggaaattatgaag
attatacagtccatcatggctaaatacaaagatatggtacaaagggcagataaacacagg
atagctgcttatgttggccaactgggttttcagaacctgtccctttcattgaaggacact
gaggtgcctatcaaagaaggtaaaaaacacagctacggagctggagctggagttggagtt
ggagttggagttggttcggctcgttttcagatgaaatacatgggaccatacttgcagaga
gatgagaggtcagacccggacccgagagtgcagaatttcataccagatacatggcagagg
gaacttcttgatgtggtggacaataatgaatctgcagtgatagtggctcccacctcttca
ggaaaaacctatgcttcttactactgcatggagaaagtgctaagacaaagcaatgaatca
gttgtggtttatgtttctcctactaaggctctcgtaaaccaggttgtagccactgtaaca
agtatgttcaacaaagatctaccaaatggtatggcattgtgtggagttttcacaagggat
tatcgcactgatgcattaaattgtcaggtactggtgacagttccacaatgtttggaaatt
cttctgttatctcctcatcggcaggattgggtgaaaaaaatcaaatatttaatatttgat
gaggtacactgcttgggaggagagcttggagctgaagtttgggagcacctactagtcatg
attcgttgtccattcttggctttatctgccacaattagcaacccagagcgcctcactgag
tggcttcaatcagtcaaaaattactggcagcaaattgatgaaagggaagacagtcttgtg
gcaaatccacctaaaaaaggaagacaaaataaactgcaaaaaacaaaaaagaagtcttcc
agagttcgattagtgcattatgacaagagatataatgacttggaaacatatatttgttct
gtacaaaattccaacgttacagctgagcattaccatccgtttgctgcattaaccatagac
catgtaaagaactatggaatcccaaaagatcttacatgttctcctcgagaatgcatacag
ctatatgacaccatggcaaaagtatggccaacatgtgcaagtatgaagactttggatcct
gaagagaatatacacctaaaggacaaattactaatcaccaaaaatgatgtgataaaatat
caagaggcccttaaaagcgaattagttgactggattgaaaaaggaaattgtgcacaagtt
tcagaggtactagagatccttaaaccaaatgaaccaactaatgatatggacagtaggcaa
tattttcctcaacttattgaaaaactaaacacaatcaacaaactacctgttctgattttt
gcattcactgtgggtatggtggaaggattggcaatacagttggatcgtcatttagaagaa
aaacagaaaaagaaacacaatcctcaggatgagaaagaacttaggaagttagaagaaaaa
gcagaaaaactagaaaaaagtatacagccaagttgcagtgactcatttgattcaaaacgt
tcaaatgcaactacaagggatcaggagtctcagatcactctgcaggagaattacaaaata
ttaaagcagaaaatcgagaagctcaaagaaacacccccagactgtacctatgctgatgaa
atggctgtggatgagaagacattgggaaacctgtatagaagaatgacatactcaagggac
gcatctactcttataccactctctaaaagaggcattggttaccatcatggatcaattgat
gctaaagggagaacatttgtagaaatgctgttcagaatgggatacattaaagttgtaaca
gctacgggcacacttgcactggggatcaacatgccatgcaaatctgtggttttcttgcat
gattcaatttacctggatgctttgaactatagacagatggcaggtcgtgctggaagaaga
ggactggatctagagggaagcgtatacttcttcaacattccagtgccaaaagtgaaaaaa
cttatgaagtccaatgttcccgagctaaggggccagtttcctctgagtatatcccttgta
ctaagactaatgctactagcagccaaagcagatgacaaagaggatgctaaagctaaagtt
ttatccgttttgaagcattcccttatgacatttaaacacgaaagtgaaacaaaagtgtta
aagctttactgtatattctctctgcagttcttgctgtctgagggatatctgaatcatgac
tgttatcccacagaatttacaggacttgttacccatctacattatcatgagccatccaat
tttgtatttgtctcttttcttgaaaaaggtctttttcatcagctgtgtaagccacttcct
gaagacccaacaaaatttccagattctgtaatgcaaacattagttctgatactggcaaac
ctatttggaagactatatttagcaccatgcaggcgttcacttaaagaaaagttttatcag
tcaaaggtttttctagaaaaactccctaaagactttgctgctgctgttaaagaatataac
aagaaggttgccacagtgtttggccactgcattcttacagcttccaagttggcagatatg
gagaaagaatatcagctacctctcacacaaatcagtttttcaggcaaggagtgcatggat
tcaagacttgtggatcatctcatgtcacactccgaaggaagaagtggcatatccccattt
gcatgtctctctgggaatacagatcatgacttgatgaaaatgaaaaacataagcagtctt
atgttgcaaacagctcaaatacctcaaaagtatattcctttattgaatccgacaagaaga
gaccttggtggaagaaagatgtttcttaattcttatgctcttgattttttcaaacatggc
tccctatcagcaattataatggacaatgggcttaactcaggtgatgcatattgccaactg
aaagacttcaaactaaccattgcatccataagtgtatccttgaaagaattgtgtgaagat
gaaaatgacccagttgccttggcatttgaccagctgaatacgatgtattttgagaaattt
aatccagtgtag
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