Aquarana catesbeiana (American bullfrog): 141114036
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Entry
141114036 CDS
T11018
Symbol
COL9A3
Name
(RefSeq) collagen alpha-3(IX) chain
KO
K08131
collagen type IX alpha
Organism
acat Aquarana catesbeiana (American bullfrog)
Pathway
acat04510
Focal adhesion
acat04512
ECM-receptor interaction
acat04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
acat00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
141114036 (COL9A3)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
141114036 (COL9A3)
09142 Cell motility
04820 Cytoskeleton in muscle cells
141114036 (COL9A3)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00535 Proteoglycans [BR:
acat00535
]
141114036 (COL9A3)
Proteoglycans [BR:
acat00535
]
Extracellular matrix (ECM) proteoglycans
Others
141114036 (COL9A3)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
Motif
Other DBs
NCBI-GeneID:
141114036
NCBI-ProteinID:
XP_073463578
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Position
LG12:complement(27014138..27079244)
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AA seq
676 aa
AA seq
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MVWFPALGFLLLVHLVAPQAPRAGPPGPPGPPGPPGIPGKDGIDGELGPAGLPGPVGPKG
APGKPGEAGKAGLPGLPGIDGLTGPDGKSGPDGPPGERGDIGPPGPDGPSGRGPPGPPGL
AGPSGLPGGKGPQGPVGPAGQPGLPGPPGPPGPPGLPGVAPDSNGDLQCPAVCPPGPPGP
PGMPGFKGHTGHKGERGESGKDGQRGDPGPPGPAGIPGSVGLQGPRGPRGSVGPQGGAGD
RGDNGFRGPSGPPGPPGKAGDQGVRGPQGYPGPKGDTGKSGPKGMPGGPGPLGELGMPGK
DGRDGSNGQDGEKGDQGRIGVPGEKGPNGLPGLGGKAGTKGEKGQLGSSGEQGESGPSGE
PGIPGEAGPPGERGEAGPRGGAGGIGLQGPIGVPGVRGFQGPKGNIGDPGLPGPTGIRGG
FGERGPVGASGPKGSEGIAGSDGLPGEKGEMGPFGPVGQKGEPGVRGEPGPKGIAGPNGT
SGVLGVPGPPGAMGLQGEQGVPGLTGKPGVPGKLASEQRIRELCGGMISDQIAQLAANLR
RPLAPGAVGRPGAPGPPGPQGAIGRVGHTGSRGPPGFRGPPGELGDPGPRGNLGDKGDKG
SVGRGIDGPPGDQGEQGAQGALGVSVDGRDGSHGEAGYPGEPGRPGAVGAHGTPGICDTS
ACQGAMAAEKSGSRKS
NT seq
2031 nt
NT seq
+upstream
nt +downstream
nt
atggtctggttcccagctcttgggttccttttattggtccacttggtggcaccccaagcg
ccgagagcgggacctccaggaccacctggcccacctggacctcctggaataccgggcaag
gatggaatagatggtgaactcggacccgctggtttacctggacctgtaggcccaaaagga
gccccaggaaaaccaggagaagctggaaaagctggcctgcctggccttccgggaattgac
ggcctgactggacctgatgggaaatccggacctgatggacctccaggagaaaggggagat
attggaccacctgggcctgatggaccttcaggaagaggaccaccaggacctcctggtctg
gctggaccgagtggcttaccaggcggtaaaggaccccagggaccagtgggacctgcaggt
caacctggccttcctggcccaccaggaccaccaggccctccgggtcttccaggagttgct
cctgacagcaatggggatttgcagtgtccagctgtttgcccacctggcccacccggtcct
cctggcatgccaggatttaagggtcacacggggcacaaaggagagagaggggagtctgga
aaggacggacagaggggagatccaggaccaccaggaccagcaggaatccctggcagtgtg
ggcttacagggtccaagaggtccaaggggctcagtcggaccccaaggaggagcaggagac
aggggagacaatggatttaggggaccttctggtcctccgggacctcctgggaaagctggg
gatcaaggtgtgaggggtccccagggatacccaggaccaaagggagacacgggcaaatca
ggtccaaaaggaatgccgggaggtccgggcccgttaggagagctgggaatgcccggaaag
gatggacgggatgggtccaatggccaggacggtgagaagggagaccagggacggatagga
gttcctggagagaagggacccaatgggctacctgggcttggtggtaaagctggaacaaag
ggagaaaaaggtcaactgggcagcagcggagagcagggagaaagtggaccttctggagag
ccaggtattcccggtgaagccggccccccaggagagagaggagaagccggccccagagga
ggagctggtggcattggactacaaggacccattggagttcctggagtaagaggcttccag
ggaccaaagggcaacattggtgaccctggtttaccaggacctaccggcatccgtggtgga
tttggtgagcggggtcctgtaggagcttcaggccccaagggtagcgagggtattgctggc
tctgatggacttccaggagagaagggagagatgggaccatttggaccagttggacagaaa
ggagagccaggagtgagaggtgaaccaggtcctaaaggtatcgccggacccaatggtaca
tctggagtactaggcgttcccggtccaccaggagcaatggggttacaaggagaacaaggc
gttccaggattaaccggcaaacctggagtcccaggcaagctggcaagtgagcagcgcatc
cgggagttgtgtggtggaatgattagtgatcaaattgcacagctagctgctaatctcaga
aggcctttggctccaggggcagttggtcgaccaggtgctcctggaccacctggacctcaa
ggtgccattggacgtgttggacatactggttctcgtggacctccaggatttagagggcca
cctggagaactgggtgatcctggtcccagaggtaacctgggtgacaaaggagacaaagga
tctgttggaagaggcatcgatggtccacctggagatcaaggagaacaaggtgcccaagga
gctcttggtgtaagtgtagatggtcgggatggttcccacggtgaggctggttaccctgga
gagcctggaagacctggtgctgtaggagcccacggtacccctgggatatgcgacacctcc
gcttgtcaaggtgccatggctgcagaaaaatcaggttccagaaagtcataa
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