Aquarana catesbeiana (American bullfrog): 141114118
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Entry
141114118 CDS
T11018
Symbol
DDX42
Name
(RefSeq) ATP-dependent RNA helicase DDX42
KO
K12835
ATP-dependent RNA helicase DDX42 [EC:
5.6.2.7
]
Organism
acat
Aquarana catesbeiana (American bullfrog)
Pathway
acat03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
acat00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
141114118 (DDX42)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
acat03041
]
141114118 (DDX42)
Enzymes [BR:
acat01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
141114118 (DDX42)
Spliceosome [BR:
acat03041
]
Complex A
U2 snRNP components
U2 snRNP specific factors
141114118 (DDX42)
Complex B
141114118 (DDX42)
Complex C
U2 SnRNP specific factors
141114118 (DDX42)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Cas3-like_C_2
ERCC3_RAD25_C
Motif
Other DBs
NCBI-GeneID:
141114118
NCBI-ProteinID:
XP_073463704
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All DBs
Position
LG12:complement(39071412..39097739)
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AA seq
943 aa
AA seq
DB search
MSMNWNKGGPTGKRGFGFGGFAISTGKKEEPKLPQSAHSAFHGPPTGNSSQLPSFYKIGS
KRANFDEENAYFDDEEEDSSNMDLPYIPAENSPTRQQMLAKKEESDSEEDPLEAFMAEVE
DQAARDLRRLEERDKEKKNARGIRDDIEEEDDQEAYFRYMAENPTAGLIPEEEEDNLEYD
SDGNPMAGTTKRVIDPLPPMDHSEIEYSSFEKNFYEEHEEITALTPQQVVELRHKLNLRV
SGAAPPRPASSFAHFGFDEQLMHQIRKSEYTQPTPIQCQGIPVALSGRDLIGIAKTGSGK
TAAFIWPVLVHIMDQKELQTGDGPIAVIVCPTRELCQQIHSECKRFGKAYNLRSVAVYGG
GSMWEQAKALQEGAEIVVCTPGRLIDHVKKKATNLQRVTYLVFDEADRMFDMGFEYQVRS
IANHVRPDRQTLLFSATFRKKIERLARDILIDPIRIVQGDIGEANEDITQLVEILPSGPE
KWSWMSRRLVEFTSTGSVLVFVTKKANAEELATNLRLEDHSLGLLHGDMDQSERNKVITD
FKKKAIPILVATDVAARGLDIPSIKTVINYDVARDIDTHTHRIGRTGRAGEKGVAYTLLT
PKDSNFAGDLVRNLEGANQYVSKELLDLAMQNAWFRKSRFKAGKGKKLNVGGGGLGYRER
PGLGADTSERNMTGNVMSNYEAFKPTGGAMGDRLSAMKAAFQSQYKNHFVAASLNTQKTG
TSTVNSGAWTSAGSLSSVPSTPSHSLVLAEESAPPPPRSIPGFTSSGTLSSIPSTYAPVS
VPSYPAASSQYSAKDSSGGGREGSGSRDRDRYSDGKGRHGEGHRHSDRESHRHGDGHRHS
SGGRHGDGRNGDGRRDSDSRREGSREGDGRRESSRDRDDSRRDSHGESRKEGSAHEGKRE
GSRDRDSDSRRESKDEGESRKESKSESFVVPDPPKRKKSRWDS
NT seq
2832 nt
NT seq
+upstream
nt +downstream
nt
atgtccatgaactggaacaaaggggggccgaccgggaagcgtggctttggatttggaggc
ttcgctatctctacggggaagaaggaggagccgaaactgccacagtcggctcacagcgct
ttccatgggccacctaccggcaacagttcccagctgccctccttctacaagattggatcc
aagagggccaactttgacgaggagaatgcatactttgatgatgaggaggaagattcctcc
aatatggacctgccatacattccagcagagaactccccaaccagacagcagatgttggcg
aagaaggaagaatctgacagcgaggaggacccgcttgaggcctttatggcagaagtggag
gatcaggctgcccgagacttgaggaggctggaggaacgggacaaggagaagaaaaacgcc
aggggtatcagggacgacattgaggaagaagatgaccaggaagcgtacttcaggtacatg
gctgagaacccaaccgccgggcttatcccagaggaagaggaggacaaccttgagtatgat
agtgatggaaaccccatggctggcaccaccaagcgtgtcattgatcctcttccccccatg
gatcattccgagatagagtattcatcttttgagaagaatttctatgaagaacatgaggag
atcactgctctgaccccccagcaggttgtggagctgaggcacaagttgaacttgcgggtc
tctggagccgctccgccacgtccagccagcagttttgctcactttggatttgatgaacag
ctcatgcaccagattaggaagtctgaatacacccaacccacacccatccagtgccagggt
attccagtggcacttagcggacgtgacctgattggcattgccaaaacagggagtggtaag
acggctgcgttcatctggccggtgctggtacacattatggatcagaaggagctccagaca
ggggatggccccattgcagtcattgtgtgtcccacacgcgagttgtgccagcagattcac
agtgaatgtaaacgttttggaaaggcctataacctgcgctctgtggctgtgtacggaggt
ggcagcatgtgggaacaggccaaggctctgcaggaaggagcagagattgtggtctgcact
ccgggccgtcttattgaccatgtgaagaaaaaagccaccaacctgcaacgtgtcacttac
cttgtgtttgatgaagcggatcgaatgtttgacatgggttttgaataccaggtccgatcc
atcgccaaccatgtgagaccagacagacaaactctcctgtttagtgccactttccggaag
aagattgaaagattagccagagatattctgattgatcccatccgcattgttcagggagat
atcggagaggccaatgaagacatcactcagttggttgagattctcccatctggcccagag
aaatggagctggatgagccgcagactggtagagttcacatctacaggaagcgtccttgtt
tttgtcaccaagaaagccaacgctgaagagctggccaccaacctacgcttagaggaccat
tctttgggacttcttcatggagatatggaccagagtgagaggaacaaagtcatcacagac
ttcaaaaagaaggccatccccattctggtagctacagatgttgctgcccgaggcttggac
attccatcaatcaaaaccgtgatcaactatgacgtggcgcgagatattgacacacacact
caccgtattggtcgtacgggcagagcaggagagaagggcgtggcttatacgctgttgaca
ccaaaagacagcaattttgctggggacttggtgaggaatctggaaggagcaaaccagtat
gtgtctaaggagcttctggacctggctatgcagaatgcttggtttcgcaagtcccgcttt
aaggctggaaaaggcaagaagctaaacgtaggtggaggaggcctgggctatagagagcgc
ccaggacttggagcagacacttcggaacgcaacatgactgggaatgtgatgagcaactac
gaagccttcaaaccgacaggcggggcgatgggagacagattgtctgccatgaaggctgct
tttcagtctcagtacaaaaatcactttgttgctgctagtctgaacactcagaaaacaggg
acatctacagtcaactctggtgcatggacaagtgctggtagtttaagttccgtacccagc
accccatcacacagtttagtactcgcagaggagtcagctccaccccctcctagatccatt
cctggctttaccagcagtggaacactaagcagtattcccagtacttatgctcctgtgagt
gttcccagttaccccgctgcctccagccaatacagtgccaaagacagcagcggtggcgga
agagagggaagcgggagccgagacagagataggtacagcgatggaaaagggagacacggg
gaaggacatcgccatagcgacagagagagccaccgccatggagacggacaccggcattcc
agcggtgggagacatggggatggtcgtaatggagatggcagaagagatagcgacagtcgg
agggagggctcacgagagggcgatggacggagggaaagctcccgcgacagggacgacagc
cgaagagacagccatggagaaagtcgaaaagaaggaagcgctcatgaaggcaagagagag
ggctcccgggacagggacagcgacagtcgcagggaatcgaaggatgagggcgaaagtcga
aaagaatcgaaaagcgaaagttttgtcgttccagatcctccaaagcggaaaaagagcaga
tgggacagttaa
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