Aquarana catesbeiana (American bullfrog): 141116446
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Entry
141116446 CDS
T11018
Symbol
RFC1
Name
(RefSeq) replication factor C subunit 1
KO
K10754
replication factor C subunit 1
Organism
acat Aquarana catesbeiana (American bullfrog)
Pathway
acat03030
DNA replication
acat03410
Base excision repair
acat03420
Nucleotide excision repair
acat03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
acat00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
141116446 (RFC1)
03410 Base excision repair
141116446 (RFC1)
03420 Nucleotide excision repair
141116446 (RFC1)
03430 Mismatch repair
141116446 (RFC1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
acat03032
]
141116446 (RFC1)
03400 DNA repair and recombination proteins [BR:
acat03400
]
141116446 (RFC1)
DNA replication proteins [BR:
acat03032
]
Eukaryotic type
DNA Replication Elongation Factors
RFC (replication factor C)
141116446 (RFC1)
DNA repair and recombination proteins [BR:
acat03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
RFC (replication factor C)
141116446 (RFC1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RFC1
BRCT
AAA
PTCB-BRCT
AAA_22
AAA_14
AAA_30
BRCT_2
RuvB_N
AAA_7
AAA_18
AAA_19
Rad17
AAA_5
TIP49
AAA_33
AAA_17
nSTAND3
RNA_helicase
NPHP3_N
NTPase_1
AAA_16
Motif
Other DBs
NCBI-GeneID:
141116446
NCBI-ProteinID:
XP_073464834
LinkDB
All DBs
Position
LG01:837185178..837275216
Genome browser
AA seq
1167 aa
AA seq
DB search
MDIRKFFGVSPVAKKTSNEKIDKERSNEKIDKKARSKASDEVTEHKRSKDKLKSPTSDDD
ARKKQQTKKKRRVIIDSDSEEDTPPPPKKSKRPEEISPPVTKPLKVKKPDPVLYVSDTDE
EDFETLKKKPKENGRSAFPLPAKPQVTATKSHAPAKVKTPEKRMCTSAVDFFGMGNIKRS
NKKLVEAKKEEPRKSSADSSMDDEAIARQLQLAEDEELERQLHEDEEFARTLAMLDDVPK
AKGIKVSPKKQSSAAAGISPEKGEKRISPGRTSSPPDESSVKMEKGIKEENKNSSHAPSE
PLFSHKSKASSEKTSPVKTSSKLALLKQKDDLQKKEKEISSPGKSRVISPKSEQPKAKDI
APKKEQPKAAMAISPKKEMTTPVRSSQRYSETSPEDSEKKRGNYMAYRSYLNREGPKALG
SKDIPQGADNCMEGLTFVITGVLESIERDEAKSLVERYGGKVTGNVSKKTNYLIMGRDAG
ESKREKAESFGTKVIDEDGLFHLIRTLPGKKSKYVIAAEAEVKVKVEKTPEKEKEPEVKK
QSSVKRKLTPQKRESPRGKKLATDAEVSSDYIKTNLKQEKPASARSLESAKPSGKTESLL
WVDKYRPTSLKAIIGQQGEQSCTNKLLRWLKDWHKNHSGDKKPVAKYNKFGVKDDGSSSK
AALLSGPPGVGKTTTSVLVCEELGYSYVELNASDTRSKNSMKEVVAESLNNTSIKGFYSG
TSNSVTNKHVLIMDEVDGMAGNEDRGGVQELISLIKQSKIPIICMCNDRNHPKIRSLANY
CFDLRFQRPRVEQIKGAMMSVAFKEGLKIPPPAMNEIILGANQDIRQVLHNLSMWSASNK
ALTYDEAKNNAKNARKDIKIGPFDVVRKVFGCDGDNSHMTLIDKLDLFFHDYSIAPLFVQ
ENYINVKPAASGGNMKKHLLLLSKTADSICDGDLVDRAIRSKQTWSLLPTQAIYASVLPG
ELMRGYMSQPPHFPSWLGKYSSTGKHDRIIQELAMHTSLRTRASKGALNLDYLSYMRDRL
VQPLIAQGSDGVQEVVDLMDAYYLMKEDFDNIMEICSWGGKPSPFSKVDSKVKSAFTRSY
NKEAHLTPYSLQMVKATKRETSSSPDMEYGEEVNNEDNPAQENEDDVGGDAMIKAKKAKT
SKPSKTSKVEKNEAKKPKSKPKTKKAK
NT seq
3504 nt
NT seq
+upstream
nt +downstream
nt
atggatattcgaaaattttttggagtaagcccagttgccaagaaaacctctaatgagaaa
attgataaagagagatctaatgagaaaatcgataaaaaagcgagatctaaagcatcagat
gaagtcacagaacacaaaaggtcaaaagataagttgaagagtccaaccagcgatgatgat
gcaaggaaaaagcagcaaactaagaagaagaggagggtgatcattgactcagattctgaa
gaggacacaccaccgccgcctaagaagtctaaaagacctgaggagatttcaccacccgtt
acaaagcctctcaaagttaaaaagccagatcccgttctgtatgtctcagatacagatgaa
gaagactttgaaaccttgaaaaagaaaccaaaagaaaatgggagatctgcctttcccctc
cctgcaaagcctcaagtcacagccaccaaaagccatgccccagccaaagtcaaaacccca
gaaaagcgaatgtgtacatctgcggtggatttctttggcatgggcaacattaaacgatcc
aacaagaaacttgtggaagctaagaaagaagagcctcggaaaagcagtgctgactcttca
atggatgatgaagctattgctagacagttacagcttgcagaagatgaagagctggaaaga
caacttcatgaagatgaggagtttgcgcggacattagcaatgctagatgacgtaccaaag
gctaagggaattaaagtcagcccgaagaagcaaagctcagcagctgctggaataagccca
gagaagggtgaaaaaaggatttctccaggcagaacttctagtccaccagatgaatcttct
gtaaaaatggagaagggtattaaagaagaaaataagaattcttcccatgcaccgtctgaa
ccattattttcacacaaaagcaaagcctcttcggagaagacttctccagtgaaaaccagc
tccaagctggcgctattgaaacaaaaggatgacttacagaaaaaagagaaggaaatatcc
agccctggaaaatccagggttatctctccaaagagtgagcagcctaaagccaaggatatc
gctccaaagaaagaacagcctaaagccgccatggctatctcgccaaagaaagaaatgacc
acaccagtaagatcatctcagaggtattcagagaccagtcctgaagattctgaaaagaaa
cggggtaactatatggcatatagaagttatctcaatcgagaaggccctaaagctttggga
tccaaggatattcctcagggtgcagataactgcatggaggggttgacttttgtcataact
ggagtcttggagtccatagaaagagatgaagccaagtctttagttgaacgatatggtgga
aaggtaactggaaatgtcagcaaaaagactaattacctcatcatgggtcgtgacgcaggc
gagtccaaacgtgagaaggcagaaagttttgggacaaaggttattgatgaggatggcctg
tttcatttaattcgcacgttaccggggaaaaaatccaagtatgtaatagcagcagaagca
gaggtgaaagtgaaagtagaaaagaccccggaaaaggaaaaagagccagaagtgaaaaaa
caaagctcggtaaagaggaaattgaccccacagaaaagagaatcgccacgggggaagaaa
ctagcaactgatgcagaggtttcaagtgattatataaagacaaatctaaaacaggagaag
ccagcctctgccagatcactggaatcggcaaaacctagtggcaagacggagagtctactc
tgggtagataaatacagaccaacatcgctaaaggcaatcatagggcagcagggagagcag
agctgtactaataagctgcttagatggctcaaagactggcacaaaaaccattctggagac
aagaaacctgttgcaaaatataacaaatttggagtgaaggatgacggatcttcatctaaa
gcagctctgttatctggtccaccaggagtcggcaaaaccacaacatcagtgcttgtgtgc
gaggagcttggctacagttacgtggagctaaatgccagtgacacccgcagcaaaaacagc
atgaaggaagtggtggcagaatcgctaaataataccagcatcaaaggattttattcaggg
acgagcaattccgtaacgaacaagcatgttctgatcatggatgaagtggacggtatggca
ggaaatgaagacagagggggtgtacaggagttaatctctttgatcaaacaatcaaagatc
cctattatatgtatgtgtaatgatcgaaatcaccctaaaatccggtcactggctaactat
tgcttcgacctccgcttccagaggcccagagtggagcagattaagggggctatgatgtct
gtggcattcaaggaaggattgaagattccaccaccagctatgaatgaaattatacttggg
gccaaccaagacattcggcaggttcttcataacctcagtatgtggagtgccagtaataag
gccttgacttatgatgaagcaaagaataatgctaagaatgccagaaaggacatcaaaata
ggtccttttgatgttgtacgcaaagtgtttggttgtgatggagacaattcccacatgacg
cttatagacaagctggaccttttcttccatgactactcgattgcacctctctttgttcag
gaaaattatatcaatgtgaagccagctgcgtcaggtgggaacatgaagaaacacttacta
ctgctgagcaaaacggctgatagcatatgcgatggtgacctggtagaccgggctatccgc
agtaagcagacctggagtcttctgcctacacaggccatctatgccagtgtcctgcctggg
gaattgatgaggggttacatgtctcaacctccacattttcctagttggcttgggaaatat
tcttctactgggaaacacgatcgtattatacaggagttggctatgcacacatctttaaga
acgcgggcaagtaagggtgctttgaatctggattacctgtcctacatgagggacagacta
gtgcagccactgatagcccagggctcagatggtgtgcaagaagttgtggacctaatggac
gcatactacttaatgaaggaggactttgataacattatggagatctgcagctggggagga
aaaccaagccctttctccaaagttgactccaaggtgaaaagcgcttttacacgcagctac
aacaaagaggctcatcttaccccttattctctgcaaatggtaaaagccactaaacgagaa
acttcctcatcgcctgatatggagtatggtgaggaagtgaataatgaagacaatccggct
caagaaaatgaagatgatgtaggcggagatgccatgatcaaggcaaaaaaggcaaaaaca
tcaaaaccttccaaaacatccaaagtagaaaagaacgaagccaaaaaaccgaagtctaaa
ccgaagactaagaaagcgaagtga
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