Aquarana catesbeiana (American bullfrog): 141116887
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Entry
141116887 CDS
T11018
Symbol
SMG5
Name
(RefSeq) nonsense-mediated mRNA decay factor SMG5
KO
K11125
protein SMG5
Organism
acat Aquarana catesbeiana (American bullfrog)
Pathway
acat03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
acat00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
141116887 (SMG5)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
acat03019
]
141116887 (SMG5)
03032 DNA replication proteins [BR:
acat03032
]
141116887 (SMG5)
Messenger RNA biogenesis [BR:
acat03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Other surveillance factors
141116887 (SMG5)
mRNA cycle factors
Common to processing body (P body) and stress granule
141116887 (SMG5)
DNA replication proteins [BR:
acat03032
]
Eukaryotic type
DNA Replication Termination Factors
Telomerase complex (animals)
141116887 (SMG5)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
EST1_DNA_bind
EST1
PIN_4
Motif
Other DBs
NCBI-GeneID:
141116887
NCBI-ProteinID:
XP_073465468
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All DBs
Position
LG13:228181207..228222579
Genome browser
AA seq
1029 aa
AA seq
DB search
MSQGAAEGEPEAKVLHTKRLYRAVVETVHRLDLIINNKTAYQEVFKPENISLRNKLRELC
VKLMFLHPVDYGKKAEEVLWRKVYYEVIQLIKTNKKHIHSRSALECAYRTHLIAGVGFYQ
HLLLYIQSHYQLELQCCIDWTHVTDPLIGNKKPVSASAKEMDWAQMACHRCLVYLGDLAR
YQNELALVNTEKLAERFYYQALTVVPQMGMPFNQLGTLAGSKYYHVEATYCYLRCIQSEV
SFEGAYGNLKRLYDKAAKMFHQLKKTENRKLSPSKKRCKDIKRLLVSFMYLQRLLQPKSS
SVDSELTSLCQSVLEDYNLCMFYLPSSQNLSSASEDEEEYDGGYSFLPDLLVFRMVVICL
MSVHSLKRADSKQYSAAIAFTLALFSHLVNHVNIRLQSELEESSVPAFHNDNPDDPESRE
VADVIEKDAEPEINQVNKQPRSKPRNKKNPKYSRLSLLRRRRHARKADESDLSEGFDSDS
SRGSAKGSDNSDSASEKSEEEAAFDIESDSDMNSQESRSDLEDMEDDHADERKSPKEPKE
AAKTCEEKPVSPAKPEAQETPVICPGPTTSEASIASNLQAMSTQMFQTKRCFRLAPTFTN
VFVKPSSEPTTYSAKEQVRLVNGDVERLKSAEQGDISDSEESIVSNKSCHNERTLQEKLE
VITAEGLLATVKIFLDWLRTNPDIIIMCAQSSQSLWNRLSVLLNLLPSASKIQESGISLC
SEVQNLLQRCEQADMSSHLLLPEDAALRNLPPLKAAHRKFNFEKERPDLTVLEESIVRSC
YIRSFGHFLTHLQGKVLQYNPELAIFTSISETQQDNTLHQAQAQFRMAQEEARRNRLMRD
MAQLRLQLEVSQLEGTLQQPKSQSSMSPYLIPDTQALCQHLGVIRQLANSGRFIIIIPQT
VIEGLDFLKKENPGARDGIRYLEAEFKKGNRYIRCQKEAGKSFERNKLKRQDIDAWHLYK
ILDSCKQLTVSQGSNEEETAGMVTIITGFQIEEPECFSSAVQSALQVAASSNIEIKNVLD
FYKQWKEMG
NT seq
3090 nt
NT seq
+upstream
nt +downstream
nt
atgagtcagggggccgctgagggcgaaccggaggccaaagtgcttcacaccaagaggctg
taccgggccgtggtggagacggtacatcggttggatctgattattaacaacaagaccgcc
tatcaggaagtcttcaaaccggagaatatcagtctacgcaacaagctgcgggagctgtgt
gtcaagctcatgttcctccaccctgttgactacgggaagaaagctgaggaagttctatgg
aggaaagtctattatgaggtcatccagctcatcaaaaccaacaagaagcacatccacagc
cggagtgccctagaatgcgcctaccgtacccacctgatagccggggtggggttctaccag
catctccttctctacatccagtcccactaccagctggagctgcagtgctgcatcgactgg
acccacgtcaccgaccctctgattgggaacaagaaacccgtgtctgcttctgccaaggag
atggattgggcccagatggcatgccaccgatgtctggtctacctgggagacctggctcgc
tatcagaatgaattagccttggtgaacacagagaaattagcggagaggttttactatcag
gcgctgactgtggtcccacagatgggaatgccatttaaccagctcggcacgttggcgggg
agcaaatactaccatgtagaggccacttactgctacctgcgctgtatccagtcagaagtc
tcctttgaaggggcatatgggaacctgaagagactgtatgacaaggcagccaaaatgttt
catcagctgaagaagactgagaaccgcaagttgtcacccagcaagaagagatgtaaggac
ataaaacgattgctggtcagcttcatgtatctgcagagactactacagccaaagagcagc
tcggtggactcggagctgacctctctgtgccagtctgttctggaggattacaacctgtgc
atgttctacctcccatcatcccagaacctgagctctgccagtgaggatgaggaggagtac
gatggaggttactccttcctgccagacctgcttgtctttaggatggtggtgatctgcctg
atgagtgttcacagcctgaagagggcagattccaagcagtacagcgctgccatagcgttc
accttggccctcttctcccacctggtcaaccatgtgaatataagactgcagagcgagttg
gaggagagctccgtccccgccttccacaacgacaatccagatgacccagaatccagggag
gtcgcagacgtgatagagaaagacgcggagccggagatcaaccaggtcaacaagcagccg
cgatccaaacccagaaacaagaagaaccccaagtactcccgtctctccctcttacgcagg
cggagacacgcgcggaaggccgacgagagcgacctgagcgaggggttcgattcggactcc
agccgcggctcggccaaaggaagcgacaactccgacagcgcttcggaaaagagcgaggag
gaggccgccttcgacatagaatccgattcggatatgaacagtcaggagtcgcgatccgat
ttggaagatatggaggatgaccacgctgatgagcgcaaaagtccaaaggagcctaaggaa
gcggccaaaacctgcgaggagaagccggtgagcccggccaaacctgaggctcaggagacc
ccagttatctgtcctggacccaccaccagcgaggccagtatagccagcaacctccaagcc
atgtccacccagatgtttcagaccaaacgttgctttcgcctggcaccaaccttcaccaac
gtctttgtgaaaccttcctctgagccgacgacctacagcgccaaagaacaagtgcggctg
gtgaatggagacgtggagaggctgaagtctgcagagcaaggggacatctctgactcggag
gagagtattgtcagtaataagtcctgtcacaatgagaggactcttcaggagaagctggag
gtcatcaccgccgaggggcttctggccaccgtcaagatcttcctggactggctgaggacc
aacccggacatcatcatcatgtgtgcacagagctcgcagagtttgtggaaccgattatct
gtcctactaaacctcttaccatcggcatccaagatccaggaatccggaatctctctgtgt
agtgaggtccagaacttactgcagaggtgtgagcaggcagacatgagcagccacctgctg
ctcccggaggacgccgccctgaggaacctccctccgctgaaggctgcgcaccgcaagttc
aactttgagaaggagaggccggatcttaccgttctggaggagtccatcgtacgcagctgc
tacatccgaagtttcggacatttcctcacccatctacaggggaaggttctccagtacaac
ccggagctcgccatattcaccagtatctccgagacccagcaagacaacaccctccaccag
gcccaggctcagttccgaatggcgcaggaggaagctcgccggaacagactaatgagagac
atggcccagctgagactccagttggaagtgtcacagctagagggcacccttcagcagccc
aaatctcagtcctccatgtctccgtacctcatcccggacacacaggccctctgccaacat
ctgggcgtcatccgacagctggcaaacagcgggcgcttcatcatcatcatcccgcagaca
gttattgaaggattggattttctaaagaaggaaaatcctggagctcgagacgggatccga
tacttagaggcagagtttaaaaaaggaaatcggtatatccgctgccaaaaggaagctggg
aaaagttttgaacggaataaattaaagcgacaggacattgacgcctggcatctctataag
attctggacagctgtaagcagttgacggtgtcacagggcagcaatgaagaagaaacggct
gggatggtcaccattataactggctttcagatagaggaacccgaatgtttctcctctgct
gtgcagtctgccctgcaggttgccgccagctccaacatcgagatcaagaatgttctagat
ttctacaagcagtggaaggagatgggctga
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