Aquarana catesbeiana (American bullfrog): 141127745
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Entry
141127745 CDS
T11018
Symbol
COL4A1
Name
(RefSeq) collagen alpha-1(IV) chain
KO
K06237
collagen type IV alpha
Organism
acat Aquarana catesbeiana (American bullfrog)
Pathway
acat04382
Cornified envelope formation
acat04510
Focal adhesion
acat04512
ECM-receptor interaction
acat04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
acat00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
141127745 (COL4A1)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
141127745 (COL4A1)
09142 Cell motility
04820 Cytoskeleton in muscle cells
141127745 (COL4A1)
09150 Organismal Systems
09158 Development and regeneration
04382 Cornified envelope formation
141127745 (COL4A1)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
acat04147
]
141127745 (COL4A1)
00536 Glycosaminoglycan binding proteins [BR:
acat00536
]
141127745 (COL4A1)
Exosome [BR:
acat04147
]
Exosomal proteins
Exosomal proteins of other cancer cells
141127745 (COL4A1)
Glycosaminoglycan binding proteins [BR:
acat00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
141127745 (COL4A1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
C4
Motif
Other DBs
NCBI-GeneID:
141127745
NCBI-ProteinID:
XP_073470596
LinkDB
All DBs
Position
LG02:complement(289125984..289367766)
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AA seq
1663 aa
AA seq
DB search
MTWDLLAVLLLLLQGFIGSTESAACNGCGTSKCDCSGVKGQKGERGLPGLPGIIGFPGLQ
GPEGPPGPLGHKGDTGEPGLPGTKGNRGPAGSAGFPGNPGLPGIPGQDGPPGPPGIPGCN
GTKGELGPFGPPGLPGLIGYPGAPGPPGLKGEPGDIIGFMAKGEKGFPGSHGLPGTPGLP
GLEGPIGPPGPPGRLGPPGPPGLPGPKGTMGLSFHGPQGEKGEPGPQGPPGPQGQQGSPE
VYRVKGEKGAPGDKGDRGFPGNPGQSIKGEKGENGKPGPRGKPGKDGDLGEKGSAGIPGS
PGFHGFPGQEGPKGDKGERGFPGPPGDVIGDGQPSVIGEKGNTGPPGYPGSKGDRGAKGE
PGIQGLSGLPGEPSPGLPGVQGFTGDRGEKGDPGLPGLSLPGEKGSQGPTGPQGPPGPPG
PIDPTQACIPGHPGDRGSDGNPGQQGFQGERGQKGDRGDACAICETMPSPLPGPPGPQGP
PGQPGYPGQQGSKGDRGEPGFDGLPGVPGPQGSSGLIGSPGAKGEPGEVFFEPKLKGEKG
DPGFPGQQGTPGKEGRPGKDGQPGQPGPKGALGTIGTKGERGPPGDSGFPGITGARGLPG
VPGIGQPGQPGDRGDPGTPGFVGLPGNPGNKGEPGKALVVAGAPGSMGPAGNPGLPGEQG
EKGSPGFPGRPGLPGEKGEAGIEGKGLPGPPGEKGYPGMDGPRGVDGITGQPGRDGLPGV
QGLSGQKGEPGLGLPGPKGLQGLPGPSGPAGEKGNTGPPGVPGEQGFSGVPGQSGTKGET
GPAGATGMRGNPGVPGIGPHGEPGPQGSQGSPGVPGPVGQKGDRGYPGFPGADMPGPKGD
KGKAGMPGSMGMPGLLGQPGPPGKDGAPGFQGQKGEMGFMGVPGTAGQPGSPGNPGLPGE
KGDSGSPGMRGEPGFPGFKGEKGEDGLQGPPGSLPPMENMKGQKGDQGDRGLTGNEGQKG
TKGEIGSFGMPGKDGDQGMPGKPGDKGDKGSHGLPGSPGAAGPKGSMGEMGLPGSTGPKG
EHGIQGTPGLPGVTGIKGEKGLKGEDGPPSVGIPGPPGSKGDSGVPGQQGFPGERGEKGD
SGAPGMPGIPGLKGSTGPAGHSGSPGIPGEKGAKGFPGLDGAAGLKGQPGEPGLQGPPGS
IGEKGESGYDGIPGAPGEKGDHGLPGRGLPGFPGEQGEKGYKGEAGLPGPPGPPGFPGIK
GDQGFPGREGPQGPAGFPGPAGVAMEGPKGERGNQGPPGFPGSPGAVGVPGLPGQDGVKG
ERGEQGWPGAPGSPGVKGNPGIQGLPGNAGSPGIEGQKGDGGSQGTPGFPGVKGSIGPIG
EKGQTGERGEPGPKGLQGLPGPAGQLQIIKGDAGPPGPAGPQGPKGFPGYPGPKGEQGFI
GAVGLPGPAGVPGINGIPGQKGEIGPSGPTGPRGYPGPPGSDGLPGPIGLPGLPSMAHGF
LVTRHSQTIEEPSCPLGTAPVYTGYSLLYVQGNERAHGQDLGAAGSCLRKFSTMPFLFCN
INNVCNFASRNDYSYWLSTPEPMPMSMAPITGENIKPFISRCSVCEAPAMVMAVHSQTIQ
IPTCPDGWISLWIGYSFVMQTSAGAEGSGQALASPGSCLEEFRSVPFIECHGRGTCNYYA
NTYSFWLATIERDEMFKKPIPSTLKAGDLRTHVSRCQVCMRRT
NT seq
4992 nt
NT seq
+upstream
nt +downstream
nt
atgacctgggatctgctggctgtactgcttctcctcctgcaggggttcatcggtagcact
gaatctgcggcatgcaatggatgtggaactagcaaatgtgactgcagcggagtaaaagga
caaaaaggagaacgaggtttacctggtctacctggcatcattggatttcctggacttcaa
ggacctgaagggccacctggaccactgggacataagggtgataccggtgagccaggactt
ccaggaacaaaaggaaacagagggcctgccggatcagctggatttccaggaaacccaggc
ctccctggcatacctgggcaagatggcccacctggtccaccaggtattccaggctgcaat
ggcacaaagggagaattaggaccttttggacctcctggcctaccggggctcataggttat
cctggtgctccaggacctccaggacttaagggagaaccaggcgacatcattggttttatg
gcaaaaggtgaaaaaggatttcccggaagtcatggtttaccaggtacacctggactcccc
ggattagaaggaccgataggaccacctggaccaccaggtcgtctagggccaccaggacca
ccaggtctaccaggaccaaagggcactatgggtctgagttttcatggaccacagggtgaa
aaaggtgagcctggtcctcagggtccccctggtccccaaggtcaacaaggttcaccagaa
gtgtacagagtaaagggagaaaagggtgcaccgggtgacaaaggtgacagaggatttcca
gggaatcctggacagagcatcaaaggagaaaaaggagagaatggaaagccagggccaagg
ggaaaacctggaaaagatggtgatctaggagaaaagggatctgctggaatcccaggtagc
ccaggctttcatggatttcctggacaggaaggtcctaaaggagacaaaggagaacgtggg
tttccaggacctccaggagacgtaataggcgatggccagccttctgtaattggagagaag
ggaaacactggaccacctggttatcctggtagcaaaggagacaggggtgctaaaggtgaa
cctggaatacaaggattatctggactaccaggggaaccttctcctggattacctggagta
caaggatttacaggggataggggtgagaaaggtgatcctggattgcctggtttatcccta
ccaggggagaagggcagccaaggtccaactgggcctcaaggacctccaggcccaccaggg
cccatcgatccaacccaagcatgcattccggggcaccctggtgatcgtggatctgatgga
aacccaggccaacaaggatttcaaggagaaaggggacaaaaaggtgacagaggagatgca
tgtgcaatatgtgaaacaatgccatcaccacttcctggacccccaggtcctcagggccct
cctgggcaaccaggatatcctggtcagcaaggtagcaaaggagacagaggggaaccaggt
tttgatggcttaccaggagtaccaggaccacaaggtagttcaggtctgatagggagtcct
ggagcaaagggagaacccggggaagttttttttgaaccaaaactaaagggcgaaaaggga
gatccaggtttcccaggacaacaaggaactcctggaaaagaaggaagacctggaaaagat
ggacaaccgggtcagcctggccccaaaggtgctttgggcacaattggtacaaaaggagag
cgtgggccacctggcgacagcggatttcctgggattactggagccagaggtttaccagga
gttccaggaattgggcaaccaggacagcctggagacagaggagacccgggaacccctggt
tttgtaggattaccaggaaaccctggaaataaaggtgaacccggaaaagctctagttgta
gctggagccccaggctcaatgggacctgcaggtaatcctggattacctggggagcaaggt
gagaagggttctccaggttttccaggaagacctgggctcccaggagaaaaaggagaagct
ggtatagagggtaaaggacttcctggaccccctggagaaaaaggttaccctggaatggat
ggcccgcggggagtagatggcattactggtcagccaggtcgtgatggtttacctggagtt
caaggtctatcaggacagaaaggtgaaccaggactgggtcttccaggccctaaaggattg
caaggattaccaggtccttctggccctgctggagaaaaaggaaatactggtccaccaggt
gtccctggtgaacagggcttttcaggggttcctggccaatcgggcactaaaggtgagact
ggccctgctggagcaacaggcatgagaggtaatcctggtgtacccggtattggtccacat
ggagaaccagggcctcaaggatcacagggatctcctggagttccaggccctgttggacag
aaaggagatagaggatatcctggattccctggagcagatatgccaggaccgaaaggagat
aagggaaaagcaggcatgcctgggtccatgggtatgccaggtttgcttggacaaccgggt
ccaccaggaaaagacggggctccaggttttcaaggccaaaaaggagaaatgggttttatg
ggagttccaggaaccgctggtcagccaggttccccaggaaatccaggcttacccggagaa
aaaggtgattctggttctcccgggatgcgtggtgagccaggatttccaggttttaaaggt
gaaaagggtgaagatggactgcaaggaccaccaggatctcttccacccatggaaaacatg
aagggtcaaaaaggagatcagggagacagaggtctcactggtaatgaaggacaaaagggg
acaaagggtgaaataggaagctttggaatgcctggaaaagatggagatcaaggaatgcca
gggaaaccaggagacaaaggagacaagggtagtcatggtttgccaggaagtccaggagct
gcaggtccaaaaggatccatgggagaaatgggtttaccaggatctactggaccaaaggga
gaacatggtattcaaggcactccaggtctaccaggtgtaactgggatcaaaggtgaaaag
gggctgaaaggtgaagatgggcctccaagtgttggcattcctggacctccagggtcaaag
ggtgattctggagtcccaggtcaacaaggttttccaggtgaaaggggagaaaagggtgac
agcggtgcccctgggatgccggggattccaggtttaaagggatcaacaggtcccgcagga
cattcaggtagcccaggaattcctggagaaaagggagctaaagggttccctggactggat
ggtgctgctggattaaaaggacaaccaggtgaacctggactccagggacctcctggttca
attggagaaaagggtgagtctggttatgatggaatcccaggagcacctggtgaaaagggt
gaccacggtttaccaggaagaggcctgcctggatttcctggagaacagggagagaaaggt
tacaaaggcgaagctggtttacctggcccacctggtccccctggctttcctggtattaaa
ggtgatcaagggtttcctggtagggaaggacctcaagggccagcaggttttcctggacct
gctggagtggcaatggaaggtccaaaaggagaaagaggaaatcagggaccacctggattt
ccaggttctccgggtgctgtgggtgttcctggccttccaggacaggatggagtgaaagga
gaaagaggagaacagggttggcctggagctcctggttccccgggagtgaaaggtaatcct
ggaatacaaggtcttcctggtaatgctggttctccaggaatagaaggacagaagggtgat
ggaggttctcaaggaacaccaggatttccaggtgtgaaaggttcaataggacccatagga
gagaaaggacaaacaggagaacggggtgaacctgggcctaaaggtttacaaggtcttcca
gggcccgcaggtcaacttcagataattaaaggagatgctggccctccaggaccagcaggc
ccccagggccctaaaggattcccaggatatcctggtcctaagggagagcaaggttttatt
ggtgctgtaggattgcctggaccagctggagtgccaggaataaatggtatcccaggtcaa
aaaggtgaaattggtcccagtgggccaacaggcccaagagggtatcctggcccaccaggt
tcagatggtttacctggtcccattggcttacctggacttccatctatggctcatggattc
ctggttacaagacacagccagacaattgaggagccatcttgtcctctaggcacagcccct
gtatacactggttactcacttctctatgtacaaggaaatgaaagagcacatggtcaagac
ttaggtgctgccggaagctgtctacgtaaattcagcacaatgccttttctattctgtaat
attaataacgtatgtaactttgcatcaagaaacgattattcctactggctctcaacacct
gaaccaatgccaatgagcatggctcctatcacaggagaaaatatcaagcctttcattagc
agatgcagtgtttgtgaagcaccagccatggtgatggcagttcacagtcaaacaattcag
atccccacatgtccagatgggtggatttcattgtggattggatattcatttgtaatgcaa
accagcgctggtgctgaaggttctggccaggctttggcatctcctggttcttgtctggag
gaattccgtagtgtaccattcatcgaatgtcatgggcgaggaacctgtaactactatgcc
aatacgtacagcttttggctggctacaattgagagagatgaaatgttcaaaaaacctata
ccttcaactctgaaagctggagatctccgtacacatgtcagccgttgtcaagtatgcatg
agaaggacttaa
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integrated database retrieval system
