Aquarana catesbeiana (American bullfrog): 141133183
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Entry
141133183 CDS
T11018
Symbol
XAB2
Name
(RefSeq) LOW QUALITY PROTEIN: pre-mRNA-splicing factor SYF1
KO
K12867
pre-mRNA-splicing factor SYF1
Organism
acat Aquarana catesbeiana (American bullfrog)
Pathway
acat03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
acat00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
141133183 (XAB2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
acat03019
]
141133183 (XAB2)
03041 Spliceosome [BR:
acat03041
]
141133183 (XAB2)
Messenger RNA biogenesis [BR:
acat03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Other transport factors
141133183 (XAB2)
Spliceosome [BR:
acat03041
]
Complex B
Other components
Prp19-related factors
141133183 (XAB2)
Complex C
141133183 (XAB2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HAT_Syf1_CNRKL1_C
HAT_Syf1_M
HAT_Syf1_CNRKL1_N
HAT_PRP39_N
HAT_PRP39_C
TPR_14
Suf
TPR_2
TPR_12
TPR_8
TPR_15
TPR_19
ARM_TT21
ARM_TT21_C
TPR_NPHP3
TPR_16
ANAPC3
TPR_1
CCDC84
Tcf25
Motif
Other DBs
NCBI-GeneID:
141133183
NCBI-ProteinID:
XP_073478482
LinkDB
All DBs
Position
LG03:624736344..624786656
Genome browser
AA seq
883 aa
AA seq
DB search
MATKSSQPGRTXTFLTSGLRERYGSLQGRVPGSDAVFLSPENHNMPDTQILIEEDDLQYE
EEILRNPYSVKCWMRYIEFKQSASAHALNLIYERALKELPGSYKLWYAYLKQRRKQVKRR
CLTDPAFEEVNNCHERALVFMHKMPRIWLDYCQFLMDQCKITRSRRTFDRALRALPITQH
HRIWPLYLRFVRAHPLPETAVRVYRRYLKLSPENAEEYIEYLRSVDRLDEAASRLAAIVN
QEDFVSKEGKSNYQLWQELCTLLSQNPGSIRSLDSAAIIRGGLTRFTDQRGKLWCALAEY
HTRSGHFEKARDVYEEAIQTVTTVRDFTQVFDSYAQFEESVIAAKMETVSEMGKEEEDDI
DLELRLARFEQLMERRPILLNGVLLRQNPHNIHEWHKRVQLYKDKPREIISTYTEAVQTV
DPAKATGKPHSLWVAFAKFYEDNGQIDDARDILQRATQVRYTHVDDLASVWCQFGEMELR
HENYDEALTILRKATAVPARKAEYFDASEPVQNRLYKSLKVWSMLADLEESLGTFKSTKA
VYDRIIDLRIATPQIIINYAMFLEEHNYFEESFKAYERGIALFRWPNVYDIWSTYLSKFI
ARYGGKKLERARDLFEQALDGCPRKFAKNIFLLYAKLEEEHGMARHAMALYERATLAVEP
KEQYEMFNIYIKRAAEIYGVTHTRSIYERAIELLPDEQSREMCQRFADMESKLGEIDRAR
AVYSYCSQMCDPRLTAGFWQNWRDFEVRHGNEDTIREMLRVKRSVQAKYNTQGTFLVSQR
LRAEAAGAGQESKEPVDEMQALEQKAAVVAAEAERDKPQMKEKILFVRSDASKTELAEMT
QQANPDEINIGEEDESEEELEPDEVQLEQKSVPASVFSGLADD
NT seq
2652 nt
NT seq
+upstream
nt +downstream
nt
atggccaccaagtcctcgcagcccggaagaacantcacgttccttacgtcgggcttacgt
gagcgctacgggtcgcttcaggggagggttcccggaagtgacgctgttttcctgagccct
gagaatcacaacatgccagacacacagatcctgatcgaggaagatgaccttcagtatgaa
gaggagatcctgcgtaacccatattcagtcaagtgctggatgcgatatattgaattcaag
cagtccgcctcagcacatgcacttaacctgatatacgagagagcactaaaggagctgcca
ggaagttacaaattatggtatgcttacctaaaacagcgcaggaagcaggtgaagaggcga
tgcctaactgatccagcctttgaagaagtaaataattgccacgagcgagcccttgtcttc
atgcacaagatgccccgaatttggctggattactgccagttccttatggatcagtgtaaa
attacccgctcaagaaggacatttgatcgtgctcttcgtgcactccccataacacagcat
catcgtatctggccgctgtacctaagatttgtccgtgctcaccctcttccagagacagca
gtcagggtctacaggagatacctaaagctatcacctgagaatgcagaggagtatatcgag
tatctgcgctctgtggacaggttggatgaggctgcatctaggctggcagccattgtgaac
caagaggattttgtgtccaaagaggggaaatcaaactaccagctgtggcaggagttgtgt
accctcctttcacagaacccaggatctatacgctctctggactctgcagccattattcgt
ggtggtctcactcgcttcaccgatcagagggggaaattgtggtgtgcccttgctgagtac
catacccggagtggtcattttgaaaaggctcgagatgtttatgaagaggccattcagaca
gttaccactgtccgtgacttcactcaggtgttcgacagctatgctcagtttgaagagagt
gtcattgcagccaaaatggaaaccgtcagtgagatgggaaaagaagaggaagatgacata
gacctagagctgcgattagcccgtttcgagcagctgatggagaggaggcctatcctactg
aatggggtgctactgagacaaaacccacacaatatccatgagtggcacaagagggtgcag
ctgtacaaagacaaaccacgggagatcataagcacttacacagaagctgttcagactgta
gatccagcaaaggccactgggaagccgcactcactctgggttgcttttgctaaattttat
gaagacaacggacagattgatgatgctcgagacatcctccaaagagcgacccaggtacga
tacacacatgtggatgacttggcctctgtctggtgccagtttggtgagatggagctgaga
catgagaactatgacgaggctctgacaatactcagaaaagccactgcagtgccagctcgt
aaggctgaatattttgacgcctcggagcctgttcagaacagattgtacaagtcattgaag
gtgtggtctatgttggctgatctggaggaaagtttaggcacttttaagtccaccaaggct
gtatacgataggatcattgatctccgcatagccaccccacagattataatcaactatgct
atgttcttggaggagcacaactattttgaagaaagttttaaggcctacgagcgtggcatc
gcccttttccgctggccgaatgtctacgatatctggagtacttatctgtccaaattcatc
gctcgatatggaggaaagaagctggaaagagctcgtgatctgtttgaacaggctctggat
ggctgtcctagaaaatttgcaaaaaatatctttctcttgtatgccaagctggaggaggag
catggtatggcccgacatgccatggctttatatgagcgtgccactctggctgtagagcca
aaagaacagtacgagatgttcaacatttacatcaagagagccgctgaaatatatggagtc
acacacacccgaagcatttatgagcgagccatagagctgttgccagacgagcagtctaga
gagatgtgccagcgttttgcggatatggagtccaagcttggagagattgatcgagcccga
gccgtgtattcctactgttcccagatgtgcgatcctaggctgacggcagggttctggcag
aattggagagactttgaggtgcgccatggcaatgaggacacaattcgggagatgctgcgt
gtaaaacgaagtgtgcaagccaaatacaacacacaaggcactttccttgtatcccagaga
ctgagggcagaagcagcaggggctggccaggaatctaaagaaccggtggatgagatgcag
gcactggagcagaaggcagcggtggtggcagcagaggctgaaagagataaaccacagatg
aaggagaaaatcctgtttgttaggtctgatgcttctaagacagaattggcagagatgaca
cagcaggcaaatccagatgagatcaacataggggaggaagatgagtcagaggaggagctg
gagccggatgaagtacaattggagcagaaatcggtccctgcttcggtcttctctgggctt
gccgatgactaa
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