Aquarana catesbeiana (American bullfrog): 141133408
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Entry
141133408 CDS
T11018
Symbol
MTREX
Name
(RefSeq) exosome RNA helicase MTR4
KO
K12598
ATP-dependent RNA helicase DOB1 [EC:
5.6.2.6
]
Organism
acat Aquarana catesbeiana (American bullfrog)
Pathway
acat03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
acat00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
141133408 (MTREX)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
acat03019
]
141133408 (MTREX)
03041 Spliceosome [BR:
acat03041
]
141133408 (MTREX)
03009 Ribosome biogenesis [BR:
acat03009
]
141133408 (MTREX)
03016 Transfer RNA biogenesis [BR:
acat03016
]
141133408 (MTREX)
Enzymes [BR:
acat01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
141133408 (MTREX)
Messenger RNA biogenesis [BR:
acat03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
TRAMP complex
141133408 (MTREX)
Spliceosome [BR:
acat03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP related factors
141133408 (MTREX)
Complex C
U4/U6.U5 tri-SnRNP related factors
141133408 (MTREX)
Ribosome biogenesis [BR:
acat03009
]
Eukaryotic type
Pre-60S particles
Helicases
141133408 (MTREX)
Transfer RNA biogenesis [BR:
acat03016
]
Eukaryotic type
tRNA degradation factors
TRAMP complex
141133408 (MTREX)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
MTR4_beta-barrel
DSHCT
DEAD
MTR4-like_stalk
Helicase_C
DEXQc_Suv3
ResIII
nSTAND3
AAA_22
Mt_ATP-synt_D
Motif
Other DBs
NCBI-GeneID:
141133408
NCBI-ProteinID:
XP_073478887
LinkDB
All DBs
Position
LG01:108832994..108971833
Genome browser
AA seq
1026 aa
AA seq
DB search
MADAFSDDLFCMIDEETPAGSKTALPGPTTSTARGKKKKGHAAVPKREAISLDGPEDCIL
GKKLKLDSSAADEINLADLMPRIKVQEVDTVEACTHEVALPADDEYMPLRPRVGQAAKEY
PFILDAFQREAILCIDNNQSVLVSAHTSAGKTVCAEYAIALALREKQRVIFTSPIKALSN
QKYREMYEEFNDVGLMTGDVTINPTASCLVMTTEILRSMLYRGSEVMREVAWVIFDEIHY
MRDAERGVVWEETIILLPDNVHYVFLSATIPNARQFAEWICHLHKQPCHVVYTDYRPTPL
QHYIFPAGGDGLHLVVDENGDFREDNFNTAMQVLRDSGEASKGDQKGRRGGTKGPSNVFK
IVKMIMERNFQPVIIFSFSKKECEAYALQMSKLDFNSDDEKKMVEEVFNNAIDCLSDEDK
KLPQVEHVLPLLKRGIGIHHGGLLPILKETIEILFSEGLLKALFATETFAMGINMPARTV
LFTNARKFDGKDFRWLSSGEYIQMSGRAGRRGMDERGIVILMVDEKMSPTVGKQLLKGSA
DPLNSAFHLTYNMVLNLLRVEEINPEYMLEKSFYQFQHYRAIPAVADKVKTLEEQYNGIQ
IPNEESVVTYYKIRQQLAKLGKEIEEYIHKPKYCLPFLQPGRLVKVKSEENDFGWGVVVN
FTRKSNVKPNTGDLDPIYVVEVLLNCSKESLKNSATEAAKPAMPDEKGEMQVVPVVLHLL
TAISSVRLYIPKDLRPLDHRQSVLKSIQEVQKRFPDGVPLLDPIDDMGIKDPGLKKVVQK
TEAFEHRMYSHPLNNDPNLETLYKMCEKKAQIAVDIRTAKHELKKARTVLQMDELKCRKR
VLRRMGFASSSDVIEVKGRVACEISSADELLLTEMMFNGHFNDLTAEQVTSLLSCFVFQE
NSSEMPKLTEQLAGPLRHMQETARRIAKLSAEAKLEVDEELYLGSFRPNLMDVIYTWANG
ATFAQICKMTDVFEGSIIRCMRRLEELLRQMCQAAKAIGNTELENKFAEGITKIKRDIVF
AASLYL
NT seq
3081 nt
NT seq
+upstream
nt +downstream
nt
atggcggacgccttcagtgatgatttgttctgtatgatcgatgaggagacaccggcgggc
agtaaaacggcactacccggcccgaccacctccactgctagagggaagaaaaaaaagggc
catgcagcggtcccaaaacgagaagccatctctcttgatggaccagaggattgcatattg
ggaaagaaattgaagcttgattcatcagctgcagatgagataaatctggcagatttaatg
cccaggataaaagtccaagaagtggatacagttgaggcctgcacacatgaggtagcattg
cctgctgatgatgagtacatgcctcttagaccacgggttgggcaagctgcaaaggaatat
ccatttatacttgatgcttttcagagagaggccattctgtgcatcgacaacaaccagtct
gtcctcgtttctgctcatacgtcagctggaaaaacagtgtgtgcagaatatgctatagcc
ttagctctcagagaaaaacagagagtgatttttaccagcccaataaaagctttaagtaac
cagaaatatagagagatgtacgaagaatttaatgatgttggattaatgactggggatgtg
accatcaaccctacagcctcctgccttgtaatgacaactgagatcttgcgaagtatgttg
tacagaggttcggaagtaatgagagaagttgcctgggtcatttttgacgaaatccactac
atgagagatgcagaaagaggagtcgtgtgggaagaaacaatcatccttctacctgataac
gtacattatgtctttctgtctgccaccatacccaacgcccggcagtttgccgaatggatt
tgccatctgcacaaacagccttgtcatgtggtctatacggattatcgcccgactcccctg
cagcattacatttttcctgcagggggagatggcctccatcttgttgtggatgagaatggt
gatttccgagaagacaacttcaatactgcaatgcaggtacttagggattctggggaggcc
tccaagggagaccaaaaaggacgtagaggaggaacaaaaggaccctctaatgtgttcaag
attgtcaagatgattatggagcgcaactttcagccagttatcatcttcagtttcagcaag
aaggaatgcgaggcctatgcactgcaaatgtccaagctggacttcaactctgatgatgag
aagaagatggtggaggaagtgtttaataacgccatagattgtctgtcagatgaggataag
aagcttccacaggtggagcatgtccttccccttctgaagcgaggtattgggatccatcat
ggaggattgctgcctatactaaaagagaccatcgagattctattctctgaaggtttgcta
aaggctttgtttgcaacagaaacttttgccatgggtataaacatgccagccaggaccgta
ttgttcaccaatgcacggaaatttgatgggaaagattttcgttggctctcctcgggcgag
tacatccagatgtctggccgtgcaggaagacgtggcatggatgaacgaggaattgtgatt
cttatggttgatgaaaaaatgagcccaacggttggcaaacagcttctaaagggatcagct
gatcctctgaacagtgctttccatctcacctacaacatggtgctgaacctcctgcgagtg
gaagaaattaaccctgagtacatgttggagaaatccttctaccagttccagcattaccgg
gctataccagcagtagctgataaggtgaagacattagaggagcagtacaatggtatacag
atccccaatgaagagagtgttgtcacatactacaaaattcgtcagcagcttgccaaactt
ggcaaggagattgaagaatacattcacaaacccaagtattgcctgccatttctgcagcca
gggaggctagttaaggttaagagtgaagagaatgactttggatggggagtagtggtaaac
tttaccaggaaatcaaatgtaaagccaaatactggagacttggatccaatctatgtggtg
gaagttttgctaaactgcagtaaagagagccttaaaaattctgcgacagaggctgcaaag
ccagcaatgccagatgaaaaaggagagatgcaggtggttccagtcgtgttgcatttgctg
acagcaatcagcagcgttcgcctgtatattccaaaggatcttcggcctctggatcacaga
caaagtgtacttaagtctatccaggaggttcagaagcgcttccctgatggcgtgcctctg
ctggatcccattgatgacatgggtattaaagatcccgggctgaaaaaggtggttcagaaa
acggaggcatttgagcaccgaatgtattcacacccgctcaataatgatcctaatctggag
accctctacaaaatgtgcgagaaaaaggcccagattgcagtagatatcagaactgcgaag
cacgagctgaagaaggctcgcacagtgctacagatggatgagctgaaatgtcggaagcgt
gtgctcaggcggatgggatttgccagctcctctgatgtcattgaagtgaaaggacgagtt
gcttgtgaaatcagcagtgctgatgaactcctccttaccgagatgatgtttaatggccat
ttcaatgacctgacagcggaacaagttacttcactgctcagctgctttgtgttccaggag
aattccagcgaaatgcccaaactgacggagcaactggcaggaccactgcggcatatgcag
gaaacagcccggaggattgctaaactctcagctgaagcaaagttggaggtggacgaagaa
ttgtatttaggctcatttcgccccaacctgatggatgtcatctatacttgggccaatggg
gcaacatttgctcaaatttgtaaaatgacggatgtttttgaaggtagtattattcgttgc
atgaggcgtctggaagaattgctgcgccagatgtgccaggctgccaaagccatagggaac
acagagctggagaacaagtttgctgaaggtattacaaaaatcaagagggacattgttttt
gctgccagcttgtatttgtaa
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