Aquarana catesbeiana (American bullfrog): 141139645
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Entry
141139645 CDS
T11018
Symbol
XRN1
Name
(RefSeq) 5'-3' exoribonuclease 1
KO
K12618
5'-3' exoribonuclease 1 [EC:3.1.13.-]
Organism
acat Aquarana catesbeiana (American bullfrog)
Pathway
acat03008
Ribosome biogenesis in eukaryotes
acat03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
acat00001
]
09120 Genetic Information Processing
09122 Translation
03008 Ribosome biogenesis in eukaryotes
141139645 (XRN1)
09123 Folding, sorting and degradation
03018 RNA degradation
141139645 (XRN1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
acat03019
]
141139645 (XRN1)
03009 Ribosome biogenesis [BR:
acat03009
]
141139645 (XRN1)
03016 Transfer RNA biogenesis [BR:
acat03016
]
141139645 (XRN1)
03036 Chromosome and associated proteins [BR:
acat03036
]
141139645 (XRN1)
Messenger RNA biogenesis [BR:
acat03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
Common to processing body (P body) and stress granule
141139645 (XRN1)
mRNA degradation factors
5'-3' decay
5' exonucleases
141139645 (XRN1)
Ribosome biogenesis [BR:
acat03009
]
Eukaryotic type
Pre-60S particles
RNases
141139645 (XRN1)
Transfer RNA biogenesis [BR:
acat03016
]
Eukaryotic type
tRNA degradation factors
Rapid tRNA decay (RTD) pathway factors
141139645 (XRN1)
Chromosome and associated proteins [BR:
acat03036
]
Eukaryotic type
Gene silencing
piRNA pathway
141139645 (XRN1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
XRN_N
XRN_M
XRN1_D2_D3
XRN1_D1
SH3_12
Dicer_dimer
Motif
Other DBs
NCBI-GeneID:
141139645
NCBI-ProteinID:
XP_073482063
LinkDB
All DBs
Position
LG04:180310272..180468120
Genome browser
AA seq
1729 aa
AA seq
DB search
MGVPKFYRWISERYPCLSEVVKEHQIPEFDNLYLDMNGIIHQCSHPNDEDVHFRITEDKI
FSDIFHYLEVLFRIIKPRKVFFMAVDGVAPRAKMNQQRGRRFRSAKEAEEKIKKAVEKGE
ILPTEARFDSNCITPGTEFMARLHEHLKYFVNMKISTDKTWQGVTIYLSGHETPGEGEHK
IMEFIRSEKTKPDHDPNTRHCLYGLDADLIMLGLTSHEVHFSLLREEVRFGGKKNQKRVS
APEETTFHLLHLSLMREYIDYEFSSVKDKISFEYDVERIIDDWILMGFLVGNDFIPHLPH
LHINHDALPLLYRTYISVLPELGGYINENGYLNLVHFEKYLTKLSAFDREHFNEVFVDLK
WFESKVGNKYLNEAAGQAAEEARNCKKKKSKVVDDSLCLIALENDGEDDSKCLDEDAEDE
DIFETEFRQYKRTYYMTKMGVEVVSDEFLAEQAECYVQAIQWILHYYYHGVQSWSWYYPY
HYAPYLSDIQNISHLKLKFDLAKPFMPFEQLLAVLPAASKDLLPQAYQSLMISEDSPIID
YYPQDFKTDLNGKQQEWEAVVLIPFIDERRLLEAMEACNKRLTEEEKTRNRHSECFMYWF
EKEEDFKYTSPWPEKFQSIECCRARNKSISLDAWHVDMVDNKITKVNKSALYFCGFPTLK
HIKHTFSLKKTGVQVFQQTSRGENMILEIAVDEDSDNINVESVASAVLGKSVFVNWPHLE
EARVVAVSDGDVKFYLEEPPGIQKLYTGGAVPPTKLVYHSDKERNIWVKELQGISEQYQR
RKGIIINDTLVLLYAQLLTGRRYQLTQNGEVYLEKQWSKQVLPFVYQAVVKDITAFESGF
SHFKTLGELYSPGSTVFMLGIPYYGSMGEVQDSSDVLSENRVRVLFNVPCEPQLDALIQN
QHKFSVKYNPGYVLASRLGVNGYLVSRFSGSIFIGRGSKRNPHGEQKANVGLNLKFVKKN
EEVPGYTKKVGTEWTYSSAVEQLLGEYIERYPELFTYISKNSHDDVFYEDDIWPGEDENG
AEKVQEIVSWLKAHPVSMLSRSSCDLQILDSAIVEKIEEEVANCKTRKGNKKVRVTVKPH
LLFRPLEQQHGVVPDRDAEFRLFDRVVNVRESFSVPVGLRGTVIGIKGAERDADVLLEVL
FDEEFHGGLIIRCSQSKGYRMPTSALINLSHGIRTENGGQKVTSVVKPQSSTNHHTPYSP
ELYAGGSQKGQLGALNHSPRSLFVPTRQPSGKQQYQGNASSPHKGYSTGNQKHKHKQDDE
FSSVWHMLQGSGKTQVPQNVNDKCLPQEKKFGQNAHQFHKPSSGDNTSKSQQKKQDATRK
ESEFSRHESWHQDVLTKQNISEPVTQIKLLKRSDLSNEVQVDSSDSILERKQNNEFEKFV
ASLNLSGQDQTRATPSTEVHVTTEEHLSPQSFAMKGTQMLKEILKIDSNDNSNPHKDIRK
DPVTTPVQHKQTKQMAAHMNRAQGAGPPFNAPNPELKRPPLLPQPLVSLVSELCRICSFV
GMPSPEFSLMRTPQNLTLCQVKLSNGLAIQGPPCHTENDAKEKAALYALQRLSSVGANFP
LQTPSPLFPNYQALGAGVPTGPLPVVFPQPAASHVFNSVSWRPPVPLLNKPYYQGTYPGQ
MPAGSHNQFVPLQVTKQRVAVNRSAEVRETSCSSQGHSSTEQRLIPDVASHLPSHRPHVP
VMSPQTPPTKDKSAPPGSSTPQAKPTPGSGSRRKSRKLAVNFSVPKASE
NT seq
5190 nt
NT seq
+upstream
nt +downstream
nt
atgggcgtccccaagttctatcgctggatctccgagcggtacccatgcctcagcgaggtg
gtcaaagagcatcagatcccagaattcgacaatctgtacttggacatgaatggcatcatt
catcaatgctctcacccgaacgatgaggatgtgcactttcgaattacagaagacaagata
ttttcagatatatttcactacttagaagttctgttccgcattatcaagccaaggaaggtt
ttcttcatggctgtggatggtgttgctcccagggcaaaaatgaaccagcagcggggaaga
cgatttagatcagcaaaagaggcagaagaaaaaataaagaaggcagtagaaaaaggggaa
attttgccaacagaagcaaggtttgactccaattgtattactcctggaactgaatttatg
gctcgcttacatgagcatctgaagtattttgtaaatatgaagatttccacagacaagaca
tggcagggtgtaactatctacttgtctggtcatgagactccaggagaaggcgaacataaa
attatggagtttatacggtctgagaaaacgaaaccagatcacgatccaaatacaaggcat
tgcctttatggattagatgcagatttgataatgcttggtttaacaagccatgaagttcac
ttttctcttctaagagaagaggttcgctttggtgggaagaagaatcaaaaaagagtttct
gcaccagaagaaacaacatttcacctccttcacttgtctctaatgagagaatatattgat
tatgagttttcatccgtgaaggacaagatctcctttgaatatgacgtagaaaggataatt
gatgactggattttaatgggatttcttgtgggcaatgattttattcctcatctacctcat
ttgcatattaaccatgatgcactgcctctattgtacagaacatatattagtgtcttacca
gaacttggaggttacattaatgagaatgggtatttgaacctagtccactttgagaaatat
ctcacaaaactttctgcctttgaccgagagcacttcaatgaagtctttgttgacttaaaa
tggtttgaaagcaaagtgggcaataagtacctcaatgaggctgcgggccaagctgctgaa
gaagctcgaaactgtaagaagaaaaagagcaaggttgtcgatgactctctctgcttaatt
gcattagaaaacgatggagaagatgattctaaatgtttagatgaggatgcagaagatgaa
gatatatttgagactgagtttcgacagtacaaaagaacttattacatgacaaaaatggga
gtggaggttgtgtcagatgagtttctggctgaacaagctgaatgttatgtccaggctata
cagtggattttgcactattactaccatggggtccaatcctggagctggtattacccctac
cattatgcaccatacttatctgatattcaaaatatcagtcacttgaaactgaagtttgat
ttggcaaaacctttcatgccatttgaacagctacttgctgtcttacctgctgctagtaaa
gatttgctgcctcaggcctatcagagcctaatgattagtgaagactctcccataatagat
tactatccccaagattttaaaactgacctcaatggaaaacaacaggagtgggaagcggtg
gtattaattccatttattgatgagaggcgactgctagaagccatggaggcctgtaataag
cggctgactgaggaagaaaagactcgtaatagacatagcgaatgcttcatgtactggttt
gaaaaggaagaggacttcaaatacacctctccctggccagagaaatttcagagcatcgag
tgctgccgggcaaggaataagagtatttcactggatgcatggcatgtggatatggttgat
aacaaaatcacaaaagtgaacaaaagtgcactgtatttttgtggcttcccaactctaaag
cacatcaaacacacgttctctctgaagaaaacaggagtgcaggtgttccagcagactagt
agaggagaaaatatgatattggagatagcggttgatgaagactctgataatattaacgtg
gaatctgtggcttcagcagttcttgggaaatctgtgtttgttaactggccccaccttgaa
gaagcacgtgtggttgcagtgtcagatggagatgtgaaattttatttggaagaacctcct
ggaattcagaagctttacactggtggagctgtaccacctacaaaattagtttatcattct
gacaaggagaggaacatctgggtgaaggaactacaaggaatctcagaacaataccaaaga
agaaaaggaattatcatcaatgacacattagtgctgctgtatgctcaactgcttactggt
cgtcgttatcagttaacacaaaatggagaggtttacttggagaagcagtggtccaagcag
gtactcccctttgtataccaggcagttgtcaaggacataactgcctttgaatctggtttt
tcccattttaagacacttggagagctgtactcacctgggagtacagtcttcatgctcggc
ataccctactatgggtccatgggagaggttcaagactcttctgatgttctcagtgagaac
agagttcgtgttctatttaacgttccctgtgaaccgcagctagatgccttaatacagaac
cagcataaattttctgtaaaatataaccctggatacgttttggcaagtcgtcttggagtg
aatggataccttgtttccaggttttcaggaagcatttttattggcagaggctccaaacga
aatccacatggagagcaaaaagcaaatgtaggcttgaatttgaaattcgttaaaaagaat
gaagaagttccaggctataccaagaaagttgggactgaatggacctattcctctgctgtg
gaacagcttctgggtgaatatatagagaggtaccctgaattgtttacatacatttcaaaa
aatagccatgatgatgtattctacgaggatgatatctggccaggagaggatgaaaatggc
gcagagaaagttcaggagattgtctcctggctaaaggctcatcctgtcagcatgctctcc
cggtcatcgtgtgatttacaaattctggattctgccattgtggagaaaattgaagaggag
gttgcaaattgtaagaccaggaagggcaataaaaaggttcgagtgactgtgaaaccacat
ttattgtttcggccacttgaacagcaacatggggttgttccagacagagatgctgagttt
cgactttttgaccgcgttgtcaatgtgcgggaaagcttttctgttccagtgggacttagg
ggcactgttattggcattaaaggagctgaaagagatgcagatgtcttgcttgaagtatta
tttgatgaagaatttcatggaggcctcattataagatgttcccaatctaaaggttatcgt
atgccaaccagtgccttaattaacctttctcatggtattcgcacagaaaatggagggcag
aaggtaacttctgtagtaaaaccccaatcgtccactaatcaccatactccttattcccct
gaattatatgctggaggatcacaaaagggacagctgggtgccctcaaccattctcctcgt
tccctctttgttcccacacggcaacctagtggaaagcagcaatatcagggaaatgccagt
tcaccacacaaaggttattcaacaggaaatcagaagcataagcataaacaagatgatgag
ttcagcagtgtgtggcatatgttgcaaggctctgggaaaacacaagtgccacaaaatgtg
aatgacaagtgtctacctcaggaaaagaagtttggacaaaatgcccatcagtttcacaaa
ccaagttctggtgacaatacctcaaaaagccagcaaaagaagcaggatgccacacgaaaa
gagtctgaattttcaagacatgagagctggcaccaagatgtattaactaaacagaatatc
tctgagcctgtaacacaaatcaagcttttgaagagaagtgacctttccaatgaggtacag
gtagacagcagtgacagcatcttagagagaaagcaaaacaatgagtttgaaaaatttgtt
gcctcactgaacctgtctggacaagatcaaacccgggccacacccagcacagaggtccat
gttaccactgaggagcatttgtcaccacagtcctttgcaatgaaaggaacccaaatgcta
aaggaaatattgaagattgacagcaatgacaattccaatccgcataaagacattagaaag
gatccagtgacaacacctgtacagcacaagcaaaccaaacagatggctgcacatatgaac
agagcacagggtgcaggaccacctttcaatgcacctaacccagagttgaagcgcccacct
ctccttccacaacctctggtctcgctagtttctgaactatgtcgtatctgctcctttgtt
ggaatgccttcgccggagttttcactaatgcgaacaccacagaatttgacactctgtcaa
gttaagctgtcaaatggtttggccatacaaggacctccatgtcatacagaaaatgatgca
aaggagaaggctgccttgtatgcactgcagagactgagttcagttggagcaaacttccct
ttgcagacaccatcacctctttttccaaattatcaggctcttggagcaggggtacctact
gggccattgccagtggtctttcctcaaccagcagcatcacatgtcttcaatagcgtttcc
tggcggccgcctgtaccacttcttaataaaccctactaccaaggaacatatccagggcaa
atgccagctgggagtcacaaccaatttgtaccactacaggtaaccaaacaaagagtagct
gttaataggagcgctgaagtccgagagacctcatgttcttcacaaggtcattcaagtacc
gagcagagactgattcccgatgtggctagtcatcttccctcacacaggcctcatgttcct
gtgatgtctccacaaacccctccaacgaaggacaagtctgctccacctggctcttcaact
cctcaagctaagcccaccccaggatcaggcagcaggagaaaatctcggaaattagccgtg
aactttagcgttccaaaagcttcagaataa
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integrated database retrieval system
