Aeromonas caviae: VI35_03675
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Entry
VI35_03675 CDS
T05190
Symbol
hrpB
Name
(GenBank) ATP-dependent helicase HrpB
KO
K03579
ATP-dependent RNA helicase HrpB [EC:
5.6.2.6
]
Organism
acav
Aeromonas caviae
Brite
KEGG Orthology (KO) [BR:
acav00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
acav03019
]
VI35_03675 (hrpB)
Enzymes [BR:
acav01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
VI35_03675 (hrpB)
Messenger RNA biogenesis [BR:
acav03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
VI35_03675 (hrpB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HrpB_C
Helicase_C
DEAD
HA2_N
AAA_22
ResIII
AAA_19
Motif
Other DBs
NCBI-ProteinID:
ATP89611
LinkDB
All DBs
Position
764289..766742
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AA seq
817 aa
AA seq
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MSSLPIVPVLPELFAALDNHASVILQAPPGAGKSTLLPLELVRQHRLSGRIIMLEPRRLA
ARNIAGFLARQLGEKVGERIGLRVRGESRTSSATRLEIVTEGVLTRMLQQDPELAGVSLV
IFDEFHERSLHADTALAFAIESQQGLRDDLKLLVMSATLDGMALDRLLPGAPVVRSEGRG
FPIEYHYRPANRQQWLEPQVGAVVLEALASQAGSALVFLPGQGEIERLAQWLEGRLPGDV
TLAPLYGRLDLAAQQAAIEPAPAGRRKLVLTTNVAETSLTIEGISVVIDSGLERRATFDI
KSGVTRLETRPIAKASATQRAGRAGRLGPGVCYRLWSSEVQERLAEQSPPDILTQELTGL
LMDAAQWGARVEALPLLDMPPPAAVASARRLLVALGAMAPEGEQQLTPAGRAMAAFGTHP
RLARMLLRARELESEGLTGIVADAAFLVALLEEDLRGSERLSVLFHRRQGALRQGAARWF
ERLGVRASSPQGQWLGLLCALAWPDRIGKLRSGSRYQLSGGVSCDLVEGHPCQGQGAIVA
VEMGQNERGSRIFIAEPVALDELVRQLPELVGERQWFDWDDREERVRAERQQVLGELVLG
QRPLTDLSDEQKGRCLLQGIRRKGLHVLPWDESSEGLLARLRCARDWLPDEAWPAMDEES
LLADLEQWLLPAVSGMTRLEQLKRLDMSDILRQSLPWPLPRRLDEALPSHFTAPTGSRVR
IRYQPGQAPAIPVRIQEMFGLGATPCVADGRVPLVVELLSPAQRPLQITADLAAFWAGSY
EQVKKEMKGRYPRHYWPDNPLEAMPTRVTKKKMGLQE
NT seq
2454 nt
NT seq
+upstream
nt +downstream
nt
ttgtcttccctccccatcgtcccggtgttgcctgaactctttgcagccctcgacaaccat
gccagcgtgatcctgcaggcgccccccggcgcgggcaaatcgaccctgctgcccctggag
ctggtgcgccagcatcggctgtccggtcgcatcatcatgctggaaccgagacgtctcgcg
gcgcgcaatatcgccggctttctggcgcgccagctcggggagaaggtgggcgagcgcatc
ggtctgcgggtgcgtggcgagagccgcaccagttctgccacccggctcgagatcgtcacc
gaaggggtgctgacccggatgctgcagcaggatcctgagctcgccggcgtgtcgctcgtc
atctttgacgagttccacgaacgcagcctgcacgccgataccgcgctggccttcgccatc
gagagccagcaggggttgcgcgatgatctcaagctcttggtgatgtccgccaccctggat
ggcatggccctggatcgcctgctgccaggtgcccccgtggtgcgctctgaggggcgcggc
tttcccatcgagtaccactatcgtcccgccaatcgccagcagtggttggagccccaggtc
ggtgccgtggtgctggaggcgctcgccagtcaggctggcagtgccctggtgtttctgccg
ggacagggggagatagagcggctggcacagtggctggaagggcggttgccaggggatgtg
accctggctcccctctatggccgtcttgacctcgcggcccagcaagcggccatcgagcct
gcgcctgcgggtcgtcgcaagctggtgctcaccaccaacgtggcggagacctccctcacc
atcgaggggatctccgtggtcatcgacagcggactggaacggcgcgccaccttcgatatc
aagagcggcgttacccggctggagacccggcccatcgccaaagcctccgccacccagcgg
gcggggcgggcagggcggcttggccccggcgtctgttaccggctctggagcagcgaggtg
caggagcgcctcgccgagcagagtcctcccgacatcctgacgcaagagctcaccggcctg
ctgatggacgccgcccagtggggggcccgggtggaggcgctgcccctgctggacatgccg
ccccctgccgccgtggccagcgcccggcggttgctggtggccctgggcgccatggccccg
gagggtgagcaacaacttaccccggcaggccgtgccatggcggccttcggcacccatccc
cgcctcgcccgcatgttgctgcgggcccgggagctggaatccgagggtctgacagggatt
gtcgccgatgcggctttcctggtggcgctgctggaagaagatctgcgaggatcggagcgc
ctgtccgtgctgttccaccgccgtcagggcgccctgcgccagggggcggcccgctggttc
gagcggctcggcgtgcgggcaagcagcccgcagggtcaatggctggggttgctgtgcgcc
ctcgcctggcccgatcgcatcggcaagctgcgcagtggcagccgctatcagctcagtggc
ggggtgagctgcgatctggtagaagggcatccctgccaggggcagggggccatcgtggcc
gtcgaaatgggtcagaacgagcgcggaagccgcatcttcatcgctgagccggtagcgctg
gatgagctggtgcgccagctgcccgagctggtcggcgagcgccagtggttcgactgggac
gatcgggaggaacgggtgcgtgcggagcgccagcaggtgctcggcgagctggtgctcggc
cagcggccgctgacggatctctccgatgaacagaaggggcgctgcctgctgcagggcatc
cggcgcaaggggctgcacgtgctgccctgggacgagagcagcgaggggctgctggcccgc
ttgcgctgcgcccgcgactggctgcccgacgaagcctggcccgccatggatgaggagagc
ctgctggccgacctcgagcagtggctgctgccggcggtgagcggcatgacccggctggag
cagttgaagcggctcgacatgagcgacatcctgcgccagtctctgccctggcccctgcca
aggcggctggacgaggcgctgccgagccacttcaccgcaccgaccggcagccgggtgcgg
atccgctaccagccgggtcaggcgccggcgatcccggtgcgcatccaggagatgttcggg
ctgggcgccaccccatgcgtggccgatggccgggtgcccctggtagtggagctgctctcc
ccggcccagcgccccttgcagatcaccgcggatctcgccgccttctgggcgggatcctat
gagcaggtgaaaaaagagatgaaggggcgctacccccgtcactactggccggacaacccg
ctggaggcgatgccgacccgggtgaccaagaagaagatgggattgcaggagtag
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