Aeromonas caviae: VI35_05080
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Entry
VI35_05080 CDS
T05190
Symbol
holA
Name
(GenBank) DNA polymerase III subunit delta
KO
K02340
DNA polymerase III subunit delta [EC:
2.7.7.7
]
Organism
acav
Aeromonas caviae
Pathway
acav03030
DNA replication
acav03430
Mismatch repair
acav03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
acav00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
VI35_05080 (holA)
03430 Mismatch repair
VI35_05080 (holA)
03440 Homologous recombination
VI35_05080 (holA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
acav03032
]
VI35_05080 (holA)
03400 DNA repair and recombination proteins [BR:
acav03400
]
VI35_05080 (holA)
Enzymes [BR:
acav01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
VI35_05080 (holA)
DNA replication proteins [BR:
acav03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
VI35_05080 (holA)
DNA repair and recombination proteins [BR:
acav03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
VI35_05080 (holA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_delta
DNA_pol3_delt_C
DNA_pol3_delta_C
DNA_pol3_gamma3
Motif
Other DBs
NCBI-ProteinID:
ATP89811
LinkDB
All DBs
Position
complement(1053116..1054150)
Genome browser
AA seq
344 aa
AA seq
DB search
MRIYPEQLADHLKAGLKPCYLIFGDEPLLKLEAVDAVRQVARKQGFDERHSFVVEQGLDW
NQVYDACQAMSLFSARQIIELELPAKIDKDLAARISDIGKQLHPDLLLVLSGNRLNQTQM
KAAWFDKLSQNGTYVPVNHPEPRFFPRWMSARFQRFGLKALPDAVNFMCHAYEGNLLAAS
QEIEKLTLLSPPQPISVAYLQETIIRHAHFTPFQLVDTLLEGKVNRAQRILLALRAEGTE
PGMLAWTLCRELEQLTELALAARAGQPLVEHFSRLRIWQSRQQLIQQALTRLPFPKIRQL
WQLMAQLDHAQRHFDTEQAWLMLQTIALGFRDGTPLPLLETESC
NT seq
1035 nt
NT seq
+upstream
nt +downstream
nt
atgcggatttaccctgaacaactcgcggatcatctcaaagctgggctcaagccctgctat
ctcatttttggggacgagcccctgctcaagctggaagctgtcgacgccgtgcgtcaggtg
gcacgcaaacagggcttcgatgaacgccacagcttcgtggtggaacaggggctggactgg
aaccaggtctacgatgcctgccaggccatgagcctgttctcggcccgccagatcatcgag
ctggagctgcccgccaagatcgacaaggatctcgccgcccgcatcagcgacattggcaag
cagctccaccccgacctgctgctggtcctgagtggtaatcgcctaaaccagacccagatg
aaggcagcctggttcgacaaactgagccagaacggcacctatgtgccggtcaaccacccc
gagccccgcttcttcccgcgctggatgagcgcccgttttcagcgcttcggcctcaaggca
ctgccggatgcggtcaacttcatgtgccacgcctacgagggcaacctgctggccgcgagc
caggagatcgagaagctgaccctgctctccccgccccagcccatcagcgtcgcctatctg
caggagaccatcatccgccacgcccacttcactcccttccagctcgtcgataccctgctg
gaaggaaaggtgaaccgggcccagcgcatcctgctggccctgcgcgccgagggcaccgaa
cccggcatgctggcctggaccctgtgccgcgaactggagcagctcaccgagctggcgctg
gccgcccgcgccggacagcccctggtggagcatttcagccgcctgcgcatctggcagagc
cgccagcagctcatccagcaggcgctgacccggcttcccttccccaagatccggcaactc
tggcaactgatggcccagctggaccatgcccagcgccatttcgacaccgagcaggcctgg
ctgatgctgcaaaccatcgccctcggctttcgtgacggtaccccgctccccctgctggag
acggaatcatgctga
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