Aeromonas caviae: VI35_10665
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Entry
VI35_10665 CDS
T05190
Name
(GenBank) ATP-dependent RNA helicase HrpA
KO
K03578
ATP-dependent RNA helicase HrpA [EC:
5.6.2.6
]
Organism
acav
Aeromonas caviae
Brite
KEGG Orthology (KO) [BR:
acav00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
acav03019
]
VI35_10665
Enzymes [BR:
acav01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
VI35_10665
Messenger RNA biogenesis [BR:
acav03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
VI35_10665
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DUF3418
OB_NTP_bind
Helicase_C
HA2_C
DEAD
AAA_19
AAA_22
nSTAND3
AAA_23
ResIII
PhoH
NTPase_1
AAA_30
NACHT
HA2_N
AAA_25
TsaE
T2SSE
SLFN-g3_helicase
ABC_tran
SRP54
Motif
Other DBs
NCBI-ProteinID:
ATP90641
LinkDB
All DBs
Position
2262137..2266051
Genome browser
AA seq
1304 aa
AA seq
DB search
MSLSIEALRRRLTACMNLDARRLSSRLHGVKKLPEAKQAAVLETIAADLDVAQARYQSRL
AGVPKVTYPDNLPVSQKQGEIAKAIEEHQVVIIAGETGSGKTTQIPKICLALGRGVKGFI
GHTQPRRLAARTVAARIAEEMESELGHYVGYKVRFTDQVSEQTHIKLMTDGILLAEIQND
RMLTQYDTIIIDEAHERSLNIDFILGYLKQLLPKRPDLKVIITSATIDPQRFSRHFNKAP
VIEVSGRTYPVEVRYRPLFVDKKSNDKSEGLEERDELQGIFDAVEELAREGLGDILIFMN
GEREIRDTADALRKLNLRDTEVLPLYARLSNAEQNKVFQPHAGRRIVLATNVAETSLTVP
GIRYVIDPGTARISRYSWRTKVQRLPIEPVSQASANQRKGRCGRVADGICIRLYSEEDFN
SRPAFTDPEILRTNLASVILQMLALGLGNMEAFPFVEPPESRHIKDGLTLLKELEAVREL
PATGDREAKLQLTETGRQLSRIPLDPRLAKMVISAAQTGCLSEVMVITAALSIQDPRERP
MEKKQAADEQHRRFEDKDSDFLAFVNLWNYLKEQQDALGSNPFRRMCQKEFLSYLRVREW
QDIHFQLRQTVKELGFKANQEPADFKTVHCALLTGLLSHIGNKDLEKPEFLGARNGRFHL
FPASGLFKKPPKWVMAAELVETSRLYARINAKIEPEWVEPLAGHLIKLHHSDPHWSKKNG
AVMAKEKVTLYGLTLVNERIINFSRIDPALCRELFIRRALVEGDFETRHRFFSDNRKLLA
EVEALEHKSRRRDILVDDEDLFRFYDARLPEEVISARHFDKWWKEAQKRDPELLNFEKEM
LMKGDAAHISDLDYPNSWQQGRLKLKLTYQFEPGEAADGVTLHIPLPLLNQVEVKGFEWL
IPGLRHELLVALIKSMPKPMRKNFVPAPNYADALLATLNPEQGPLLDEMERQLRRMTGVT
VPRESWDWAAVPDHLKLTFRVVDDKHKKVAEGKDLEALKESLRGKVQETLSQVADDDIEQ
SGLTLWSFGELPQEYSQKRGGFEVKAYPALVDQKDSVAIQLVESPVVQQQLMWAGQRRLV
LLNVPSPIKYLQEKLPNKAKLGLYFNPFGKVAELIDDCIACGCDKLIEQHGGLAWDEAGF
EALKEFVRAELNDAVVEVAKQVEAVLTLSHEIKKRLKGKMQLDTAFAMSDIQQQLGNLIH
KGFVTETGWQRLPDLLRYLRAIERRLEKLAIDPNRDRVYMLKVHSVESEYKALLAKIPKS
QLIPAEVANIRWMIEELRVSFFAQQLGTPYPISDKRVQSAIAQC
NT seq
3915 nt
NT seq
+upstream
nt +downstream
nt
ttgtctctctctatcgaggcgctgcgccgccgtcttaccgcctgcatgaatctcgacgcc
cgccgtctttccagtcgactgcacggggtcaagaagctgccggaagccaagcaggctgcc
gtgctcgagaccatcgccgctgacctggatgtggcacaggcgcgctatcagtcccgtctg
gcgggcgtgcccaaggtcacctatccggacaatctgccagtcagccagaagcagggggag
atcgccaaagccattgaagagcatcaagtggtgatcatcgccggcgaaaccggttcgggc
aaaaccacccagatccccaagatctgtctggcgctcgggcgcggggtcaagggcttcatc
ggccacacacagccacgccgtctggcggcccgtaccgtggcagcccgtattgccgaggag
atggagtctgagcttggccactacgtgggttacaaggtgcgctttaccgatcaggtgagt
gagcagacccacatcaagctgatgaccgacggtatcctgctggccgagatccagaacgac
cggatgctgacccagtacgacaccatcatcatcgatgaggcccacgagcgcagcctcaac
atcgacttcattctgggttatctcaaacagctgctgccaaagcgccccgatctcaaggtg
atcatcacctcggccactattgacccccagcgtttctctcgtcatttcaacaaggcgccg
gtgatcgaggtctccggtcgcacctatccggtggaggtgcgttaccgtccactgtttgtt
gataaaaaaagcaatgacaagagcgaagggctggaggagcgcgacgagctgcaggggatc
tttgatgcggtggaagagctggcacgcgaagggctgggtgacatcctcatcttcatgaac
ggcgagcgggagatccgcgataccgccgatgccctgcgcaagctcaatctgcgcgatacc
gaggtgctgccgctctacgcccgcctctccaacgccgagcagaacaaggtgttccagcca
catgccgggcggcgcatcgtgctcgccaccaacgtggcggagacctcgctgacggtgccg
ggcattcgctacgtcatcgatccgggcaccgcccgcatcagccgctactcctggcgcacc
aaggtgcagcgcctgcccatcgagccggtctcccaggccagcgccaaccagcgtaaaggg
cgttgcggtcgggtggcggacggtatctgtatccgtctctactctgaggaggatttcaat
agccgtcctgcctttaccgaccccgagatcctgcgcaccaacctggcctcggtcatcctg
cagatgctggcgctcggccttggcaatatggaggcgttccccttcgtcgagccacccgaa
tcgcgccatatcaaggacggtctgaccctcttgaaagagctggaggcggtgagggaattg
ccagccacgggcgatcgcgaagccaagttgcagctgaccgagaccggtcgccagctctcg
cgtatcccccttgatccacgtctggcgaagatggtgatcagcgcggcgcagaccggctgt
ttgagcgaggtgatggtgatcaccgccgccctcagcattcaggatccccgcgagcggccc
atggagaaaaagcaggccgccgacgagcagcacagacgttttgaagacaaggattccgac
ttcctcgcttttgttaacctctggaactatctgaaagagcagcaggatgcccttggcagc
aacccgtttcgccgcatgtgccagaaggagtttctctcctacctgcgggtgcgcgagtgg
caggacattcacttccaactgcgccagacggtcaaagagctgggcttcaaggccaaccag
gaaccggcagacttcaagacggtgcactgcgctctgctgaccggcctcttgagccacatc
ggcaacaaggatctggaaaagcccgagtttctcggggcccgcaacggccgcttccacctc
ttcccggcctccggtctgttcaaaaagccgcccaagtgggtgatggccgccgagctggtg
gagacctcgcgcctctatgcccgcatcaacgccaagattgaacccgagtgggtggagccg
ctggcggggcacctcatcaagctacaccacagcgacccccactggtcgaagaaaaatggc
gccgtgatggccaaggagaaggtgacgctttatggcctgactctggtcaacgagcgcatc
atcaacttcagccgcatcgatccggccctgtgccgcgagctctttatccgccgcgcgctg
gtggagggggatttcgagacccgtcaccgcttcttcagcgataaccgcaagctcctggcc
gaggtggaggcgctggagcacaaatcccgtcggcgcgacatcctggtggatgacgaggac
ttgttccgcttctacgatgctcgtttgccggaggaggtgatctccgcccgccacttcgac
aagtggtggaaagaggcgcaaaagcgggatcccgaactgctcaacttcgagaaagagatg
ctgatgaagggggatgcggcccacatcagcgatctcgactaccccaactcctggcagcag
gggcgtctcaagctcaagctgacctatcagttcgagccgggggaggccgcagatggtgtg
accctgcatattccgcttccgctcctgaatcaggtggaggtgaaggggttcgagtggttg
atccccgggctgcgtcacgagctgttggtggccctcatcaagtcgatgccaaagccgatg
cgcaagaatttcgtgccggcgccgaactatgccgatgcgctgcttgccaccctcaatccc
gagcaggggccgctgttggacgaaatggagcgccaactgcgccgcatgaccggcgtgacc
gtgccccgagaatcctgggattgggctgcggtgcccgatcacctgaaactcaccttccgg
gtggtggacgacaagcacaagaaggtggcggaaggcaaagatctggaggcattgaaagag
tccctgcgtggcaaggtacaggagaccctgtcacaagtggcggacgatgatatcgagcag
tccggcctcactctgtggagctttggcgagttgccccaggagtacagccagaagcgcggc
gggttcgaagtgaaagcctatccggcgttggtggatcagaaggattcggtcgccatccag
ctggtggagagtccggtggtgcagcagcagctgatgtgggcaggccaacgccggctggta
ctgctcaacgtgccatctcccatcaagtatctgcaggagaagctgcccaacaaggccaag
ctggggctctatttcaacccgtttggcaaggtggcggagctgattgacgactgcatcgcc
tgcggctgtgacaagctgattgagcagcatggcgggctggcgtgggacgaggccggtttc
gaggcgctcaaggagtttgttcgcgccgagctcaacgatgcggtggtggaggtggccaag
caggtggaagccgtgctgaccctctcccatgagatcaagaaacggctcaagggcaagatg
cagctcgacaccgcctttgccatgtcggacatccagcagcagctcggcaacctcatccac
aagggctttgtcaccgagaccggctggcagcggctgcctgacttgctgcgctacctgcgg
gccatcgagcggcggctcgagaagctcgccatcgatcccaaccgggatcgggtctacatg
ctcaaggtgcacagcgtggagtcggagtacaaggcactgctcgccaagatccccaaatcc
cagctgatcccggccgaggtggccaatatccgctggatgatcgaggagctgcgagtctcc
ttcttcgcccagcaactggggacgccataccctatctcggataaacgggtgcagagcgcc
attgcccagtgctaa
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